Wall clock time and date at job start Tue Mar 31 2020 11:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46910 * 109.46761 * 2 1 4 4 C 1.46893 * 110.99844 * 298.61143 * 3 2 1 5 5 C 1.50697 * 109.47460 * 288.68226 * 4 3 2 6 6 H 1.08004 * 119.99781 * 0.24320 * 5 4 3 7 7 C 1.37880 * 120.00204 * 180.25053 * 5 4 3 8 8 N 1.31511 * 119.99979 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 120.00133 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46877 * 90.00254 * 9 7 5 11 11 H 1.48494 * 109.47455 * 210.00472 * 9 7 5 12 12 H 1.48504 * 109.47014 * 330.00829 * 9 7 5 13 13 C 1.46901 * 110.99805 * 62.56558 * 3 2 1 14 14 C 1.50701 * 109.47071 * 66.04699 * 13 3 2 15 15 C 1.38250 * 120.00191 * 89.99613 * 14 13 3 16 16 C 1.38217 * 120.00026 * 180.02562 * 15 14 13 17 17 C 1.38247 * 120.00391 * 0.02562 * 16 15 14 18 18 C 1.38219 * 119.99623 * 359.95348 * 17 16 15 19 19 C 1.50705 * 119.99852 * 179.97438 * 18 17 16 20 20 N 1.46908 * 109.46678 * 90.00427 * 19 18 17 21 21 C 1.46847 * 110.99537 * 294.20591 * 20 19 18 22 22 C 1.53044 * 109.52136 * 174.16255 * 21 20 19 23 23 C 1.53119 * 109.27565 * 59.17980 * 22 21 20 24 24 C 1.53121 * 109.16418 * 302.34627 * 23 22 21 25 25 C 1.46843 * 110.99832 * 170.00204 * 20 19 18 26 26 C 1.38215 * 119.99996 * 270.20886 * 14 13 3 27 27 H 1.09004 * 109.46812 * 182.69318 * 1 2 3 28 28 H 1.08994 * 109.47194 * 302.68979 * 1 2 3 29 29 H 1.08999 * 109.47174 * 62.69755 * 1 2 3 30 30 H 1.08999 * 109.47259 * 240.00394 * 2 1 3 31 31 H 1.08997 * 109.47093 * 119.99781 * 2 1 3 32 32 H 1.09000 * 109.47333 * 48.68559 * 4 3 2 33 33 H 1.09001 * 109.47107 * 168.68186 * 4 3 2 34 34 H 0.96995 * 120.00246 * 179.97438 * 8 7 5 35 35 H 1.09004 * 109.47210 * 306.04703 * 13 3 2 36 36 H 1.08997 * 109.46980 * 186.04166 * 13 3 2 37 37 H 1.08003 * 120.00375 * 0.02562 * 15 14 13 38 38 H 1.08010 * 119.99968 * 179.97438 * 16 15 14 39 39 H 1.07996 * 120.00529 * 179.97438 * 17 16 15 40 40 H 1.08993 * 109.47168 * 330.00718 * 19 18 17 41 41 H 1.09000 * 109.47062 * 209.99957 * 19 18 17 42 42 H 1.08994 * 109.46886 * 294.17496 * 21 20 19 43 43 H 1.09001 * 109.46579 * 54.14979 * 21 20 19 44 44 H 1.09007 * 109.50210 * 299.24312 * 22 21 20 45 45 H 1.08990 * 109.50496 * 179.12268 * 22 21 20 46 46 H 1.09007 * 109.52219 * 182.44491 * 23 22 21 47 47 H 1.09000 * 109.52386 * 62.25114 * 23 22 21 48 48 H 1.09007 * 109.50448 * 297.71553 * 24 23 22 49 49 H 1.08994 * 109.50757 * 177.59578 * 24 23 22 50 50 H 1.09005 * 109.46250 * 305.85041 * 25 20 19 51 51 H 1.08998 * 109.46641 * 65.81769 * 25 20 19 52 52 H 1.08009 * 120.00084 * 0.02562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5759 2.1003 -1.2039 5 6 2.3229 1.5765 -2.4034 6 1 3.0514 0.7882 -2.2838 7 6 2.0765 2.1038 -3.6533 8 7 2.7280 1.6464 -4.7001 9 14 0.8161 3.4670 -3.8601 10 1 1.4833 4.7850 -3.7086 11 1 0.2037 3.3744 -5.2096 12 1 -0.2404 3.3253 -2.8262 13 6 1.5993 2.0920 1.2172 14 6 2.2728 1.4736 2.4151 15 6 3.4993 1.9491 2.8406 16 6 4.1173 1.3815 3.9389 17 6 3.5093 0.3381 4.6119 18 6 2.2828 -0.1369 4.1868 19 6 1.6202 -1.2747 4.9200 20 7 0.7661 -0.7376 5.9879 21 6 1.5706 -0.0713 7.0200 22 6 0.6440 0.5996 8.0367 23 6 -0.2601 -0.4600 8.6727 24 6 -1.0511 -1.1722 7.5719 25 6 -0.0754 -1.7915 6.5688 26 6 1.6665 0.4283 3.0859 27 1 -0.3633 -1.0266 0.0483 28 1 -0.3633 0.5550 0.8648 29 1 -0.3633 0.4714 -0.9132 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5064 1.9446 -1.3455 33 1 1.7757 3.1655 -1.0881 34 1 2.5544 2.0171 -5.5794 35 1 0.5177 2.0136 1.3278 36 1 1.8819 3.1421 1.1434 37 1 3.9747 2.7639 2.3147 38 1 5.0757 1.7527 4.2711 39 1 3.9923 -0.1056 5.4699 40 1 2.3833 -1.9199 5.3551 41 1 1.0115 -1.8506 4.2230 42 1 2.1933 -0.8081 7.5272 43 1 2.2059 0.6826 6.5549 44 1 0.0305 1.3464 7.5326 45 1 1.2411 1.0808 8.8111 46 1 -0.9514 0.0195 9.3658 47 1 0.3510 -1.1855 9.2097 48 1 -1.6913 -0.4532 7.0605 49 1 -1.6650 -1.9567 8.0143 50 1 -0.6356 -2.2872 5.7759 51 1 0.5551 -2.5204 7.0780 52 1 0.7100 0.0543 2.7512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411305583.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:53 Heat of formation + Delta-G solvation = 7.238398 kcal Electronic energy + Delta-G solvation = -26876.069630 eV Core-core repulsion = 23453.015547 eV Total energy + Delta-G solvation = -3423.054083 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.88696 -39.68925 -38.45095 -35.11520 -34.67453 -32.71556 -31.93790 -31.65269 -31.22345 -29.22849 -27.21058 -26.28884 -24.64761 -24.12870 -23.86495 -22.73486 -21.72978 -20.57038 -20.45608 -18.87869 -17.31661 -17.05792 -16.93045 -16.63689 -16.40690 -16.17653 -15.86610 -15.41666 -15.25633 -15.07040 -14.57006 -14.53164 -14.39303 -14.22017 -14.16229 -13.58008 -13.48791 -13.32805 -13.27545 -13.05384 -12.95401 -12.68105 -12.58479 -12.48645 -12.33108 -12.10783 -11.96358 -11.84195 -11.64748 -11.58459 -11.50478 -11.40066 -11.26873 -11.16346 -10.75693 -9.63204 -9.57226 -9.18003 -8.88209 -8.26368 -6.28503 0.48329 0.57041 1.34816 1.35892 1.46549 2.35137 2.72351 3.06968 3.17426 3.49988 3.78832 3.89042 3.93611 4.01347 4.03294 4.11020 4.25574 4.26189 4.30594 4.36052 4.39072 4.48845 4.50909 4.61061 4.63694 4.66129 4.68284 4.68937 4.71416 4.78335 4.82427 4.87689 4.96823 4.97457 5.07023 5.08717 5.09545 5.19718 5.24340 5.24639 5.26006 5.32478 5.42564 5.49279 5.57487 5.63120 5.71905 5.84472 6.01790 6.11951 6.19697 6.23808 6.43194 6.68756 6.77399 7.34433 8.90689 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.022338 B = 0.002714 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.176237 B =10315.039312 C =10744.586901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.062 3.938 3 N -0.536 5.536 4 C 0.168 3.832 5 C -0.509 4.509 6 H 0.033 0.967 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.945 3.055 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.250 1.250 13 C 0.087 3.913 14 C -0.079 4.079 15 C -0.115 4.115 16 C -0.122 4.122 17 C -0.118 4.118 18 C -0.082 4.082 19 C 0.100 3.900 20 N -0.544 5.544 21 C 0.052 3.948 22 C -0.116 4.116 23 C -0.119 4.119 24 C -0.115 4.115 25 C 0.054 3.946 26 C -0.098 4.098 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.001 0.999 33 H 0.023 0.977 34 H 0.266 0.734 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.117 0.883 38 H 0.140 0.860 39 H 0.135 0.865 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.035 0.965 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.079 0.921 50 H 0.076 0.924 51 H 0.036 0.964 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.854 -4.641 29.478 30.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.066 4.066 3 N -0.259 5.259 4 C 0.041 3.959 5 C -0.547 4.547 6 H 0.052 0.948 7 C -0.190 4.190 8 N -0.591 5.591 9 Si 0.769 3.231 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.174 1.174 13 C -0.040 4.040 14 C -0.079 4.079 15 C -0.134 4.134 16 C -0.140 4.140 17 C -0.136 4.136 18 C -0.083 4.083 19 C -0.027 4.027 20 N -0.269 5.269 21 C -0.076 4.076 22 C -0.154 4.154 23 C -0.157 4.157 24 C -0.153 4.153 25 C -0.073 4.073 26 C -0.117 4.117 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.019 0.981 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.135 0.865 38 H 0.157 0.843 39 H 0.153 0.847 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.053 0.947 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.098 0.902 50 H 0.094 0.906 51 H 0.054 0.946 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.644 -4.294 29.083 29.935 hybrid contribution -0.440 0.025 -0.747 0.867 sum -6.084 -4.269 28.337 29.295 Atomic orbital electron populations 1.22305 0.97653 1.02654 1.01277 1.21947 0.93392 0.90180 1.01091 1.62076 1.60026 1.02613 1.01185 1.20002 0.93880 0.93798 0.88215 1.21235 1.21945 1.19977 0.91548 0.94832 1.25826 0.98295 0.99524 0.95355 1.70052 1.44278 1.44936 0.99882 0.85745 0.79864 0.79555 0.77972 1.19088 1.20818 1.17356 1.21108 0.97218 0.97634 0.88050 1.19772 0.95716 0.96897 0.95537 1.21161 0.94657 1.00627 0.96970 1.21296 1.00437 0.96818 0.95477 1.21180 0.95095 0.97143 1.00220 1.19766 0.94947 0.97967 0.95602 1.20960 0.95257 0.93129 0.93325 1.61904 1.23449 1.29914 1.11619 1.22180 0.95149 0.98013 0.92240 1.21579 0.98103 0.98152 0.97560 1.21576 0.98567 0.97979 0.97547 1.21581 0.97521 1.00254 0.95949 1.22140 0.95378 0.92180 0.97627 1.20925 0.99706 0.95628 0.95483 0.90813 0.91725 0.94071 0.93492 0.90427 0.98121 0.95879 0.92527 0.93659 0.90851 0.86507 0.84259 0.84696 0.93264 0.89841 0.94689 0.90955 0.92421 0.90644 0.91120 0.91876 0.92134 0.90248 0.90597 0.94582 0.86358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.99 9.11 71.98 0.66 -5.33 16 2 C 0.06 2.39 5.54 86.30 0.48 2.87 16 3 N -0.54 -22.60 4.65 -905.37 -4.21 -26.81 16 4 C 0.17 8.14 3.64 85.56 0.31 8.45 16 5 C -0.51 -29.98 9.12 25.60 0.23 -29.74 16 6 H 0.03 2.23 7.70 -2.91 -0.02 2.20 16 7 C 0.01 0.40 5.47 84.66 0.46 0.86 16 8 N -0.95 -60.40 13.96 21.45 0.30 -60.10 16 9 Si 0.95 44.60 27.46 68.60 1.88 46.48 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 H -0.25 -10.97 6.55 99.48 0.65 -10.32 16 13 C 0.09 2.98 4.91 85.56 0.42 3.40 16 14 C -0.08 -2.38 4.89 -19.87 -0.10 -2.48 16 15 C -0.12 -3.27 9.70 22.27 0.22 -3.06 16 16 C -0.12 -2.84 10.05 22.27 0.22 -2.61 16 17 C -0.12 -2.50 7.88 22.27 0.18 -2.32 16 18 C -0.08 -1.88 4.89 -19.86 -0.10 -1.97 16 19 C 0.10 1.87 5.12 85.56 0.44 2.31 16 20 N -0.54 -9.76 4.65 -900.91 -4.19 -13.94 16 21 C 0.05 0.84 5.16 86.33 0.45 1.29 16 22 C -0.12 -1.65 6.09 30.65 0.19 -1.46 16 23 C -0.12 -1.42 6.00 30.67 0.18 -1.23 16 24 C -0.12 -1.47 6.09 30.65 0.19 -1.29 16 25 C 0.05 0.79 5.46 86.33 0.47 1.26 16 26 C -0.10 -2.63 7.57 22.27 0.17 -2.47 16 27 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.06 1.91 5.59 -2.39 -0.01 1.90 16 29 H 0.04 1.55 6.34 -2.39 -0.02 1.54 16 30 H 0.05 2.13 7.20 -2.39 -0.02 2.11 16 31 H 0.08 2.70 5.97 -2.39 -0.01 2.68 16 32 H 0.00 0.06 4.96 -2.39 -0.01 0.05 16 33 H 0.02 1.11 7.24 -2.39 -0.02 1.09 16 34 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 35 H 0.05 1.47 5.97 -2.38 -0.01 1.45 16 36 H 0.07 2.48 7.81 -2.39 -0.02 2.46 16 37 H 0.12 3.33 8.06 -2.91 -0.02 3.30 16 38 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 39 H 0.14 2.21 7.95 -2.91 -0.02 2.19 16 40 H 0.05 0.83 8.07 -2.39 -0.02 0.81 16 41 H 0.08 1.53 7.93 -2.39 -0.02 1.51 16 42 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.07 1.31 5.75 -2.39 -0.01 1.30 16 44 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 47 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 49 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.08 1.08 8.02 -2.38 -0.02 1.06 16 51 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 52 H 0.12 3.10 7.20 -2.91 -0.02 3.08 16 Total: -1.00 -67.43 389.59 -0.34 -67.77 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.81 Total: 20.11 kcal Atomic # 6 Polarization: -38.58 SS G_CDS: 5.06 Total: -33.51 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -8.10 Total: -100.85 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.48 kcal Total: -67.43 -0.34 -67.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411305583.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.009 kcal (2) G-P(sol) polarization free energy of solvation -67.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds