Wall clock time and date at job start Tue Mar 31 2020 11:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46777 * 2 1 4 4 C 1.50702 * 109.47008 * 120.00133 * 2 1 3 5 5 H 1.08005 * 119.99869 * 120.00335 * 4 2 1 6 6 C 1.37875 * 120.00026 * 299.99941 * 4 2 1 7 7 N 1.31518 * 120.00000 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00037 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47077 * 60.00111 * 8 6 4 10 10 H 1.48499 * 109.47162 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47153 * 300.00222 * 8 6 4 12 12 N 1.46903 * 109.47260 * 240.00020 * 2 1 3 13 13 C 1.46891 * 110.99995 * 183.95131 * 12 2 1 14 14 C 1.46906 * 110.99598 * 59.99990 * 12 2 1 15 15 C 1.50702 * 109.46638 * 190.00362 * 14 12 2 16 16 C 1.38256 * 120.00325 * 90.00236 * 15 14 12 17 17 C 1.38211 * 120.00062 * 180.25725 * 16 15 14 18 18 C 1.38258 * 119.99774 * 359.52161 * 17 16 15 19 19 C 1.38211 * 120.00175 * 0.43545 * 18 17 16 20 20 C 1.50706 * 120.00291 * 179.78693 * 19 18 17 21 21 N 1.46901 * 109.46658 * 270.01781 * 20 19 18 22 22 C 1.46841 * 111.00092 * 294.20821 * 21 20 19 23 23 C 1.53036 * 109.52466 * 174.16227 * 22 21 20 24 24 C 1.53126 * 109.27853 * 59.17844 * 23 22 21 25 25 C 1.53118 * 109.15849 * 302.34993 * 24 23 22 26 26 C 1.46852 * 110.99927 * 169.99829 * 21 20 19 27 27 C 1.38215 * 119.99534 * 269.97250 * 15 14 12 28 28 H 1.09005 * 109.47247 * 299.99577 * 1 2 3 29 29 H 1.08994 * 109.47515 * 60.00271 * 1 2 3 30 30 H 1.09001 * 109.47193 * 180.02562 * 1 2 3 31 31 H 0.97001 * 119.99748 * 180.02562 * 7 6 4 32 32 H 1.08994 * 109.47459 * 296.04679 * 13 12 2 33 33 H 1.09000 * 109.47297 * 56.04929 * 13 12 2 34 34 H 1.08999 * 109.46988 * 176.04711 * 13 12 2 35 35 H 1.08993 * 109.47513 * 70.00043 * 14 12 2 36 36 H 1.08998 * 109.46937 * 309.99755 * 14 12 2 37 37 H 1.08002 * 119.99676 * 359.97122 * 16 15 14 38 38 H 1.07998 * 120.00348 * 179.72205 * 17 16 15 39 39 H 1.08003 * 120.00342 * 180.21025 * 18 17 16 40 40 H 1.08998 * 109.46732 * 30.01361 * 20 19 18 41 41 H 1.08993 * 109.47519 * 150.01854 * 20 19 18 42 42 H 1.08999 * 109.46370 * 294.17675 * 22 21 20 43 43 H 1.08996 * 109.46522 * 54.14579 * 22 21 20 44 44 H 1.08998 * 109.50421 * 299.23976 * 23 22 21 45 45 H 1.09002 * 109.50389 * 179.11839 * 23 22 21 46 46 H 1.08996 * 109.52217 * 182.44258 * 24 23 22 47 47 H 1.09003 * 109.51814 * 62.25061 * 24 23 22 48 48 H 1.09002 * 109.49732 * 297.70697 * 25 24 23 49 49 H 1.08996 * 109.49935 * 177.59669 * 25 24 23 50 50 H 1.09008 * 109.45842 * 305.85708 * 26 21 20 51 51 H 1.08995 * 109.45974 * 65.81883 * 26 21 20 52 52 H 1.07996 * 120.00459 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1196 4.0079 9 1 3.8075 -1.1190 4.0077 10 1 1.8278 -0.4193 5.2204 11 1 1.8280 -2.5199 4.0081 12 7 2.0197 -0.6925 -1.1994 13 6 3.4850 -0.7945 -1.1870 14 6 1.5486 -0.0263 -2.4211 15 6 1.8579 -0.8911 -3.6159 16 6 0.9372 -1.8273 -4.0485 17 6 1.2231 -2.6241 -5.1411 18 6 2.4257 -2.4781 -5.8074 19 6 3.3457 -1.5415 -5.3754 20 6 4.6587 -1.3856 -6.0987 21 7 5.6569 -2.2817 -5.5000 22 6 5.9625 -1.8822 -4.1204 23 6 6.8912 -2.9175 -3.4819 24 6 8.1804 -3.0144 -4.3025 25 6 7.8304 -3.3843 -5.7465 26 6 6.8744 -2.3355 -6.3193 27 6 3.0618 -0.7478 -4.2795 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.7087 1.1612 3.4844 32 1 3.9191 0.2044 -1.2300 33 1 3.8069 -1.2915 -0.2719 34 1 3.8163 -1.3720 -2.0500 35 1 2.0518 0.9346 -2.5280 36 1 0.4722 0.1324 -2.3563 37 1 -0.0035 -1.9392 -3.5299 38 1 0.5057 -3.3586 -5.4764 39 1 2.6477 -3.0983 -6.6632 40 1 4.5264 -1.6399 -7.1504 41 1 4.9997 -0.3538 -6.0145 42 1 6.4522 -0.9085 -4.1243 43 1 5.0377 -1.8212 -3.5467 44 1 6.3967 -3.8887 -3.4652 45 1 7.1304 -2.6126 -2.4631 46 1 8.8267 -3.7817 -3.8763 47 1 8.6949 -2.0536 -4.2871 48 1 7.3507 -4.3629 -5.7653 49 1 8.7405 -3.4129 -6.3456 50 1 6.6119 -2.6037 -7.3427 51 1 7.3598 -1.3596 -6.3129 52 1 3.7810 -0.0164 -3.9417 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411315944.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:12 Heat of formation + Delta-G solvation = 25.020358 kcal Electronic energy + Delta-G solvation = -27329.946855 eV Core-core repulsion = 23907.663855 eV Total energy + Delta-G solvation = -3422.282999 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.83049 -38.57068 -36.76478 -34.18290 -32.97051 -31.20058 -31.11955 -30.52046 -28.96631 -27.02935 -26.16078 -24.65860 -23.36505 -23.13838 -22.99970 -21.70673 -20.24956 -19.77393 -19.13312 -16.43958 -16.22826 -16.13257 -15.52086 -15.34490 -14.95814 -14.69201 -14.48412 -14.12697 -13.98926 -13.76269 -13.55214 -13.35356 -13.30707 -12.68526 -12.40242 -12.35523 -12.26911 -12.00275 -11.91677 -11.69978 -11.33363 -11.16173 -11.02267 -10.96690 -10.87291 -10.74619 -10.68667 -10.52640 -10.50761 -10.28041 -10.12451 -9.98444 -9.75922 -8.88741 -8.62638 -8.48272 -8.35129 -8.27440 -7.14797 -6.00351 -4.04757 1.58700 1.66121 3.32790 3.37016 3.40212 3.70710 4.17689 4.42784 4.65244 4.69150 4.78299 4.87330 4.95693 5.13489 5.15913 5.24773 5.27919 5.31630 5.34478 5.38836 5.39690 5.47494 5.49317 5.60718 5.71633 5.73717 5.81265 5.83703 5.85711 5.94333 6.01072 6.07047 6.14644 6.26859 6.29504 6.33603 6.36341 6.43412 6.71246 6.77296 6.80590 6.84614 6.97125 7.00984 7.03751 7.05762 7.16732 7.28004 7.52643 7.73187 7.83730 8.21737 8.33449 8.60897 9.01558 9.60138 11.06435 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013266 B = 0.003557 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.162946 B = 7870.335799 C = 9473.089893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.212 3.788 3 H -0.003 1.003 4 C -0.503 4.503 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.529 5.529 13 C 0.035 3.965 14 C 0.083 3.917 15 C -0.058 4.058 16 C -0.099 4.099 17 C -0.123 4.123 18 C -0.108 4.108 19 C -0.084 4.084 20 C 0.098 3.902 21 N -0.531 5.531 22 C 0.049 3.951 23 C -0.117 4.117 24 C -0.122 4.122 25 C -0.116 4.116 26 C 0.056 3.944 27 C -0.109 4.109 28 H 0.085 0.915 29 H 0.008 0.992 30 H 0.035 0.965 31 H 0.261 0.739 32 H 0.007 0.993 33 H 0.076 0.924 34 H 0.047 0.953 35 H 0.027 0.973 36 H 0.083 0.917 37 H 0.121 0.879 38 H 0.117 0.883 39 H 0.115 0.885 40 H 0.079 0.921 41 H 0.038 0.962 42 H 0.029 0.971 43 H 0.088 0.912 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.070 0.930 49 H 0.063 0.937 50 H 0.072 0.928 51 H 0.030 0.970 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.047 -5.161 -18.774 21.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.107 3.893 3 H 0.015 0.985 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.253 5.253 13 C -0.113 4.113 14 C -0.044 4.044 15 C -0.059 4.059 16 C -0.118 4.118 17 C -0.141 4.141 18 C -0.127 4.127 19 C -0.085 4.085 20 C -0.029 4.029 21 N -0.256 5.256 22 C -0.079 4.079 23 C -0.155 4.155 24 C -0.159 4.159 25 C -0.153 4.153 26 C -0.072 4.072 27 C -0.128 4.128 28 H 0.104 0.896 29 H 0.027 0.973 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.025 0.975 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.101 0.899 37 H 0.139 0.861 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.098 0.902 41 H 0.057 0.943 42 H 0.047 0.953 43 H 0.106 0.894 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.089 0.911 49 H 0.082 0.918 50 H 0.090 0.910 51 H 0.048 0.952 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.587 -5.968 -18.587 21.327 hybrid contribution 0.978 1.225 0.903 1.809 sum 9.566 -4.743 -17.684 20.657 Atomic orbital electron populations 1.21865 0.97760 0.99690 0.99860 1.19253 0.92321 0.91946 0.85823 0.98525 1.21119 1.31027 1.12263 0.89723 0.91891 1.24924 0.95214 0.95078 0.98985 1.69884 1.36921 1.23056 1.23495 0.86589 0.79073 0.79805 0.82111 1.20364 1.21372 1.20185 1.62159 1.09331 1.52376 1.01449 1.22299 0.88841 0.98507 1.01652 1.21142 1.01342 0.93206 0.88750 1.19941 0.93587 0.96720 0.95621 1.21045 0.99673 0.95105 0.95937 1.21073 0.97090 0.99562 0.96400 1.20829 0.93790 0.97848 1.00238 1.19542 0.95120 0.97211 0.96618 1.20973 0.89565 0.94545 0.97826 1.61937 1.10114 1.51171 1.02365 1.22254 1.00178 0.96109 0.89318 1.21577 0.95182 1.00193 0.98525 1.21591 0.97580 1.01231 0.95535 1.21571 0.98187 0.99501 0.96082 1.22079 0.90344 0.97853 0.96940 1.20917 0.96605 0.99868 0.95395 0.89638 0.97292 0.94618 0.92950 0.97457 0.90562 0.93461 0.95455 0.89895 0.86090 0.86507 0.86702 0.90243 0.94335 0.95269 0.89400 0.91036 0.91349 0.91930 0.92481 0.91083 0.91836 0.90979 0.95191 0.87002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 8.76 37.16 0.33 -2.93 16 2 C 0.21 5.37 2.06 -68.86 -0.14 5.23 16 3 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 4 C -0.50 -13.77 7.88 -34.44 -0.27 -14.04 16 5 H 0.06 1.72 6.41 -52.48 -0.34 1.39 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.50 11.32 55.43 0.63 -24.87 16 8 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.53 -11.46 4.61 -237.74 -1.10 -12.56 16 13 C 0.04 0.71 8.86 60.06 0.53 1.24 16 14 C 0.08 1.55 4.93 -4.97 -0.02 1.52 16 15 C -0.06 -0.94 4.88 -104.62 -0.51 -1.45 16 16 C -0.10 -1.49 9.70 -39.58 -0.38 -1.88 16 17 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 18 C -0.11 -1.36 9.70 -39.58 -0.38 -1.75 16 19 C -0.08 -1.10 4.89 -104.62 -0.51 -1.61 16 20 C 0.10 1.08 5.12 -4.97 -0.03 1.05 16 21 N -0.53 -5.98 4.65 -236.12 -1.10 -7.07 16 22 C 0.05 0.59 5.16 -3.84 -0.02 0.57 16 23 C -0.12 -1.29 6.09 -26.65 -0.16 -1.45 16 24 C -0.12 -1.12 6.00 -26.61 -0.16 -1.28 16 25 C -0.12 -0.99 6.09 -26.66 -0.16 -1.15 16 26 C 0.06 0.51 5.46 -3.84 -0.02 0.49 16 27 C -0.11 -1.59 5.92 -39.58 -0.23 -1.82 16 28 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 29 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 30 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.08 1.64 6.10 -51.93 -0.32 1.33 16 34 H 0.05 0.85 4.72 -51.93 -0.25 0.60 16 35 H 0.03 0.51 8.06 -51.93 -0.42 0.09 16 36 H 0.08 1.54 5.77 -51.93 -0.30 1.24 16 37 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 39 H 0.11 1.23 8.06 -52.48 -0.42 0.81 16 40 H 0.08 0.76 7.93 -51.93 -0.41 0.34 16 41 H 0.04 0.42 8.07 -51.93 -0.42 0.00 16 42 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 1.23 4.29 -51.93 -0.22 1.01 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 48 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.07 0.59 8.02 -51.92 -0.42 0.17 16 51 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 52 H 0.11 1.62 7.93 -52.49 -0.42 1.20 16 LS Contribution 389.91 15.07 5.88 5.88 Total: -1.00 -28.55 389.91 -12.55 -41.10 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -9.19 Total: 0.90 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -2.65 Total: -19.72 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: -1.57 Total: -44.50 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.55 -12.55 -41.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411315944.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.122 kcal (2) G-P(sol) polarization free energy of solvation -28.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds