Wall clock time and date at job start Tue Mar 31 2020 11:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09002 * 109.46837 * 2 1 4 4 C 1.50703 * 109.46926 * 120.00111 * 2 1 3 5 5 H 1.07999 * 119.99387 * 120.00367 * 4 2 1 6 6 C 1.37867 * 120.00110 * 299.99877 * 4 2 1 7 7 N 1.31519 * 119.99752 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 120.00298 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47355 * 89.99691 * 8 6 4 10 10 H 1.48500 * 109.47153 * 209.99957 * 8 6 4 11 11 H 1.48505 * 109.47287 * 329.99912 * 8 6 4 12 12 N 1.46899 * 109.47005 * 240.00183 * 2 1 3 13 13 C 1.46894 * 110.99931 * 306.04757 * 12 2 1 14 14 C 1.46904 * 110.99769 * 70.00186 * 12 2 1 15 15 C 1.50701 * 109.46874 * 169.99868 * 14 12 2 16 16 C 1.38235 * 119.99808 * 89.99842 * 15 14 12 17 17 C 1.38243 * 119.99602 * 179.97438 * 16 15 14 18 18 C 1.38232 * 120.00069 * 0.09581 * 17 16 15 19 19 C 1.50701 * 119.99886 * 179.97438 * 18 17 16 20 20 N 1.46899 * 109.47308 * 269.90910 * 19 18 17 21 21 C 1.46846 * 110.99748 * 294.21014 * 20 19 18 22 22 C 1.53040 * 109.52113 * 174.15694 * 21 20 19 23 23 C 1.53129 * 109.27507 * 59.17940 * 22 21 20 24 24 C 1.53119 * 109.16126 * 302.34315 * 23 22 21 25 25 C 1.46847 * 110.99871 * 170.00011 * 20 19 18 26 26 C 1.38234 * 119.99866 * 359.86117 * 18 17 16 27 27 C 1.38230 * 119.99865 * 269.97587 * 15 14 12 28 28 H 1.09001 * 109.46939 * 299.99729 * 1 2 3 29 29 H 1.09000 * 109.47052 * 59.99718 * 1 2 3 30 30 H 1.09002 * 109.46837 * 180.02562 * 1 2 3 31 31 H 0.97009 * 119.99387 * 180.02562 * 7 6 4 32 32 H 1.09008 * 109.46783 * 183.95468 * 13 12 2 33 33 H 1.09002 * 109.47128 * 303.95178 * 13 12 2 34 34 H 1.08997 * 109.47489 * 63.95358 * 13 12 2 35 35 H 1.08993 * 109.47642 * 49.99432 * 14 12 2 36 36 H 1.09001 * 109.46800 * 289.99203 * 14 12 2 37 37 H 1.08000 * 120.00616 * 359.70324 * 16 15 14 38 38 H 1.08001 * 119.99556 * 179.97438 * 17 16 15 39 39 H 1.09007 * 109.47270 * 29.90821 * 19 18 17 40 40 H 1.09000 * 109.46792 * 149.90515 * 19 18 17 41 41 H 1.08992 * 109.46339 * 294.17284 * 21 20 19 42 42 H 1.08995 * 109.46279 * 54.15021 * 21 20 19 43 43 H 1.08998 * 109.50719 * 299.24238 * 22 21 20 44 44 H 1.08995 * 109.50655 * 179.12012 * 22 21 20 45 45 H 1.09003 * 109.52142 * 182.43930 * 23 22 21 46 46 H 1.08998 * 109.52242 * 62.25264 * 23 22 21 47 47 H 1.08996 * 109.50240 * 297.71792 * 24 23 22 48 48 H 1.08996 * 109.50069 * 177.59192 * 24 23 22 49 49 H 1.08997 * 109.46021 * 305.85174 * 25 20 19 50 50 H 1.08993 * 109.46583 * 65.82573 * 25 20 19 51 51 H 1.08000 * 119.99729 * 180.02562 * 26 18 17 52 52 H 1.08001 * 120.00371 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1382 -0.8592 3.5565 8 14 0.6249 1.2789 2.6542 9 1 -0.8027 0.8726 2.6998 10 1 0.9760 1.9949 3.9069 11 1 0.8471 2.1765 1.4921 12 7 2.0197 -0.6925 -1.1995 13 6 1.4343 -2.0353 -1.3079 14 6 1.7530 0.0974 -2.4090 15 6 2.4775 -0.5161 -3.5794 16 6 1.8539 -1.4791 -4.3505 17 6 2.5184 -2.0415 -5.4245 18 6 3.8070 -1.6422 -5.7260 19 6 4.5315 -2.2557 -6.8964 20 7 5.2694 -3.4438 -6.4474 21 6 6.3451 -3.0751 -5.5182 22 6 6.9958 -4.3429 -4.9602 23 6 7.5578 -5.1738 -6.1172 24 6 6.4266 -5.5034 -7.0951 25 6 5.7924 -4.2019 -7.5912 26 6 4.4301 -0.6785 -4.9554 27 6 3.7653 -0.1154 -3.8821 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9035 -0.5280 4.4375 32 1 1.8665 -2.5520 -2.1650 33 1 1.6467 -2.5987 -0.3992 34 1 0.3556 -1.9520 -1.4399 35 1 2.1024 1.1190 -2.2603 36 1 0.6814 0.1054 -2.6087 37 1 0.8494 -1.7954 -4.1114 38 1 2.0314 -2.7942 -6.0267 39 1 3.8092 -2.5438 -7.6604 40 1 5.2301 -1.5296 -7.3123 41 1 7.0940 -2.4844 -6.0456 42 1 5.9313 -2.4883 -4.6981 43 1 6.2505 -4.9274 -4.4209 44 1 7.8044 -4.0690 -4.2826 45 1 7.9839 -6.0986 -5.7281 46 1 8.3308 -4.6041 -6.6329 47 1 5.6724 -6.1061 -6.5893 48 1 6.8286 -6.0584 -7.9427 49 1 4.9772 -4.4334 -8.2767 50 1 6.5439 -3.6059 -8.1089 51 1 5.4367 -0.3662 -5.1913 52 1 4.2525 0.6370 -3.2797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411325605.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:16 Heat of formation + Delta-G solvation = 32.722372 kcal Electronic energy + Delta-G solvation = -26775.072956 eV Core-core repulsion = 23353.123941 eV Total energy + Delta-G solvation = -3421.949015 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.86558 -38.73386 -37.16217 -34.33271 -32.74761 -31.45438 -31.05714 -30.65064 -29.38336 -27.49900 -25.65123 -25.22891 -23.75247 -23.27214 -22.34351 -22.27281 -20.43819 -19.86294 -19.23065 -16.62994 -16.37120 -16.05410 -15.59217 -15.45499 -14.95677 -14.77834 -14.54817 -14.40009 -14.16479 -13.71347 -13.60394 -13.45700 -13.22455 -13.16249 -12.78660 -12.45290 -12.42070 -12.18445 -12.02950 -11.93791 -11.48492 -11.40259 -11.20476 -11.16126 -11.06829 -10.89412 -10.77935 -10.63290 -10.58282 -10.45424 -10.18338 -9.98833 -9.51947 -9.05286 -8.68107 -8.58672 -8.54256 -8.29677 -7.30012 -6.04560 -4.02283 1.48452 1.63770 3.26248 3.36264 3.38937 3.63154 4.10588 4.40770 4.58305 4.61830 4.71221 4.80598 4.90325 4.99889 5.05311 5.15391 5.19576 5.22962 5.24532 5.30978 5.32123 5.39301 5.41182 5.52417 5.65278 5.68380 5.70651 5.74166 5.78751 5.91369 5.94456 5.97621 6.02422 6.14209 6.19411 6.21769 6.23279 6.28387 6.31185 6.34718 6.54850 6.61632 6.71725 6.73257 6.89958 6.91283 6.93979 6.95898 7.20621 7.21447 7.65322 7.95872 8.09664 8.68558 9.04277 9.57624 11.08680 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020090 B = 0.002727 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.362772 B =10263.966561 C =11015.242423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.181 3.819 3 H 0.038 0.962 4 C -0.499 4.499 5 H 0.082 0.918 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.297 1.297 11 H -0.269 1.269 12 N -0.516 5.516 13 C 0.031 3.969 14 C 0.084 3.916 15 C -0.059 4.059 16 C -0.114 4.114 17 C -0.100 4.100 18 C -0.089 4.089 19 C 0.099 3.901 20 N -0.532 5.532 21 C 0.051 3.949 22 C -0.118 4.118 23 C -0.121 4.121 24 C -0.117 4.117 25 C 0.056 3.944 26 C -0.116 4.116 27 C -0.099 4.099 28 H 0.044 0.956 29 H 0.027 0.973 30 H 0.057 0.943 31 H 0.263 0.737 32 H 0.051 0.949 33 H 0.078 0.922 34 H 0.015 0.985 35 H 0.075 0.925 36 H 0.034 0.966 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.079 0.921 40 H 0.038 0.962 41 H 0.028 0.972 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.072 0.928 50 H 0.030 0.970 51 H 0.113 0.887 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.006 -4.263 -23.934 25.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.073 3.927 3 H 0.056 0.944 4 C -0.537 4.537 5 H 0.100 0.900 6 C -0.133 4.133 7 N -0.539 5.539 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.225 1.225 11 H -0.194 1.194 12 N -0.239 5.239 13 C -0.118 4.118 14 C -0.043 4.043 15 C -0.059 4.059 16 C -0.133 4.133 17 C -0.119 4.119 18 C -0.090 4.090 19 C -0.028 4.028 20 N -0.256 5.256 21 C -0.076 4.076 22 C -0.156 4.156 23 C -0.159 4.159 24 C -0.154 4.154 25 C -0.072 4.072 26 C -0.135 4.135 27 C -0.118 4.118 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.034 0.966 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.098 0.902 40 H 0.056 0.944 41 H 0.046 0.954 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.082 0.918 49 H 0.091 0.909 50 H 0.048 0.952 51 H 0.131 0.869 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.209 -4.621 -23.435 24.680 hybrid contribution -1.005 1.410 -0.171 1.740 sum 5.203 -3.211 -23.606 24.385 Atomic orbital electron populations 1.22835 1.01754 1.01099 0.98834 1.19812 0.88680 0.95216 0.88985 0.94391 1.20934 1.31344 1.13727 0.87719 0.89993 1.24914 0.95933 0.96579 0.95835 1.69888 1.45816 1.40360 0.97839 0.86894 0.80549 0.83985 0.76892 1.20834 1.22461 1.19380 1.62198 1.58558 1.02369 1.00733 1.22345 0.95716 0.91524 1.02180 1.21108 0.96600 0.97395 0.89243 1.19913 0.94598 0.96067 0.95352 1.21045 1.00049 0.96846 0.95364 1.20850 0.94364 0.99183 0.97494 1.19537 0.94700 0.97246 0.97534 1.20969 0.96409 0.90682 0.94770 1.61917 1.26040 1.21836 1.15846 1.22194 0.91847 0.97052 0.96538 1.21587 1.00030 0.96438 0.97515 1.21587 0.97544 0.99978 0.96797 1.21581 0.98079 0.96813 0.98972 1.22080 0.98126 0.94796 0.92174 1.20944 0.99213 0.97368 0.95956 1.20990 0.94159 1.00157 0.96493 0.93734 0.95363 0.92409 0.92678 0.93033 0.90328 0.96647 0.90693 0.94788 0.86524 0.86552 0.90241 0.94366 0.95351 0.89651 0.90880 0.91513 0.91882 0.92537 0.90978 0.91777 0.90915 0.95217 0.86873 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.06 7.92 37.16 0.29 -3.77 16 2 C 0.18 4.26 1.90 -68.86 -0.13 4.13 16 3 H 0.04 0.93 6.99 -51.93 -0.36 0.57 16 4 C -0.50 -13.97 8.49 -34.44 -0.29 -14.26 16 5 H 0.08 2.52 7.37 -52.49 -0.39 2.14 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 7 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 8 Si 0.89 21.95 24.37 -169.99 -4.14 17.81 16 9 H -0.28 -6.82 6.87 56.52 0.39 -6.43 16 10 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 11 H -0.27 -6.36 6.53 56.52 0.37 -5.99 16 12 N -0.52 -10.70 4.69 -237.72 -1.12 -11.82 16 13 C 0.03 0.60 8.26 60.06 0.50 1.09 16 14 C 0.08 1.45 4.69 -4.97 -0.02 1.43 16 15 C -0.06 -0.90 4.88 -104.63 -0.51 -1.41 16 16 C -0.11 -1.59 7.97 -39.58 -0.32 -1.90 16 17 C -0.10 -1.25 9.70 -39.58 -0.38 -1.64 16 18 C -0.09 -1.07 4.89 -104.62 -0.51 -1.58 16 19 C 0.10 0.98 5.12 -4.98 -0.03 0.95 16 20 N -0.53 -5.47 4.65 -236.12 -1.10 -6.57 16 21 C 0.05 0.54 5.16 -3.83 -0.02 0.52 16 22 C -0.12 -1.14 6.09 -26.64 -0.16 -1.31 16 23 C -0.12 -0.99 6.00 -26.60 -0.16 -1.15 16 24 C -0.12 -0.92 6.09 -26.65 -0.16 -1.08 16 25 C 0.06 0.47 5.46 -3.83 -0.02 0.45 16 26 C -0.12 -1.45 7.88 -39.58 -0.31 -1.76 16 27 C -0.10 -1.42 9.70 -39.59 -0.38 -1.81 16 28 H 0.04 1.02 3.27 -51.93 -0.17 0.85 16 29 H 0.03 0.53 6.91 -51.93 -0.36 0.17 16 30 H 0.06 1.24 6.42 -51.93 -0.33 0.91 16 31 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 32 H 0.05 0.91 6.16 -51.92 -0.32 0.59 16 33 H 0.08 1.71 6.76 -51.93 -0.35 1.36 16 34 H 0.02 0.28 6.46 -51.93 -0.34 -0.06 16 35 H 0.07 1.26 7.87 -51.93 -0.41 0.85 16 36 H 0.03 0.56 7.00 -51.93 -0.36 0.20 16 37 H 0.12 1.53 8.02 -52.49 -0.42 1.11 16 38 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.08 0.70 7.93 -51.93 -0.41 0.29 16 40 H 0.04 0.36 8.07 -51.93 -0.42 -0.06 16 41 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.09 1.03 5.75 -51.93 -0.30 0.73 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.55 8.01 -51.93 -0.42 0.13 16 50 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 51 H 0.11 1.22 7.95 -52.49 -0.42 0.80 16 52 H 0.12 1.70 8.06 -52.49 -0.42 1.27 16 LS Contribution 384.34 15.07 5.79 5.79 Total: -1.00 -30.05 384.34 -11.69 -41.75 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -9.18 Total: 1.02 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -2.72 Total: -21.21 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: -1.44 Total: -45.16 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.14 Total: 17.81 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.05 -11.69 -41.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411325605.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.470 kcal (2) G-P(sol) polarization free energy of solvation -30.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds