Wall clock time and date at job start Tue Mar 31 2020 11:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09002 * 109.46837 * 2 1 4 4 C 1.50703 * 109.46926 * 120.00111 * 2 1 3 5 5 H 1.07999 * 119.99387 * 120.00367 * 4 2 1 6 6 C 1.37867 * 120.00110 * 299.99877 * 4 2 1 7 7 N 1.31519 * 119.99752 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 120.00298 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47355 * 89.99691 * 8 6 4 10 10 H 1.48500 * 109.47153 * 209.99957 * 8 6 4 11 11 H 1.48505 * 109.47287 * 329.99912 * 8 6 4 12 12 N 1.46899 * 109.47005 * 240.00183 * 2 1 3 13 13 C 1.46894 * 110.99931 * 306.04757 * 12 2 1 14 14 C 1.46904 * 110.99769 * 70.00186 * 12 2 1 15 15 C 1.50701 * 109.46874 * 169.99868 * 14 12 2 16 16 C 1.38235 * 119.99808 * 89.99842 * 15 14 12 17 17 C 1.38243 * 119.99602 * 179.97438 * 16 15 14 18 18 C 1.38232 * 120.00069 * 0.09581 * 17 16 15 19 19 C 1.50701 * 119.99886 * 179.97438 * 18 17 16 20 20 N 1.46899 * 109.47308 * 269.90910 * 19 18 17 21 21 C 1.46846 * 110.99748 * 294.21014 * 20 19 18 22 22 C 1.53040 * 109.52113 * 174.15694 * 21 20 19 23 23 C 1.53129 * 109.27507 * 59.17940 * 22 21 20 24 24 C 1.53119 * 109.16126 * 302.34315 * 23 22 21 25 25 C 1.46847 * 110.99871 * 170.00011 * 20 19 18 26 26 C 1.38234 * 119.99866 * 359.86117 * 18 17 16 27 27 C 1.38230 * 119.99865 * 269.97587 * 15 14 12 28 28 H 1.09001 * 109.46939 * 299.99729 * 1 2 3 29 29 H 1.09000 * 109.47052 * 59.99718 * 1 2 3 30 30 H 1.09002 * 109.46837 * 180.02562 * 1 2 3 31 31 H 0.97009 * 119.99387 * 180.02562 * 7 6 4 32 32 H 1.09008 * 109.46783 * 183.95468 * 13 12 2 33 33 H 1.09002 * 109.47128 * 303.95178 * 13 12 2 34 34 H 1.08997 * 109.47489 * 63.95358 * 13 12 2 35 35 H 1.08993 * 109.47642 * 49.99432 * 14 12 2 36 36 H 1.09001 * 109.46800 * 289.99203 * 14 12 2 37 37 H 1.08000 * 120.00616 * 359.70324 * 16 15 14 38 38 H 1.08001 * 119.99556 * 179.97438 * 17 16 15 39 39 H 1.09007 * 109.47270 * 29.90821 * 19 18 17 40 40 H 1.09000 * 109.46792 * 149.90515 * 19 18 17 41 41 H 1.08992 * 109.46339 * 294.17284 * 21 20 19 42 42 H 1.08995 * 109.46279 * 54.15021 * 21 20 19 43 43 H 1.08998 * 109.50719 * 299.24238 * 22 21 20 44 44 H 1.08995 * 109.50655 * 179.12012 * 22 21 20 45 45 H 1.09003 * 109.52142 * 182.43930 * 23 22 21 46 46 H 1.08998 * 109.52242 * 62.25264 * 23 22 21 47 47 H 1.08996 * 109.50240 * 297.71792 * 24 23 22 48 48 H 1.08996 * 109.50069 * 177.59192 * 24 23 22 49 49 H 1.08997 * 109.46021 * 305.85174 * 25 20 19 50 50 H 1.08993 * 109.46583 * 65.82573 * 25 20 19 51 51 H 1.08000 * 119.99729 * 180.02562 * 26 18 17 52 52 H 1.08001 * 120.00371 * 0.02562 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1382 -0.8592 3.5565 8 14 0.6249 1.2789 2.6542 9 1 -0.8027 0.8726 2.6998 10 1 0.9760 1.9949 3.9069 11 1 0.8471 2.1765 1.4921 12 7 2.0197 -0.6925 -1.1995 13 6 1.4343 -2.0353 -1.3079 14 6 1.7530 0.0974 -2.4090 15 6 2.4775 -0.5161 -3.5794 16 6 1.8539 -1.4791 -4.3505 17 6 2.5184 -2.0415 -5.4245 18 6 3.8070 -1.6422 -5.7260 19 6 4.5315 -2.2557 -6.8964 20 7 5.2694 -3.4438 -6.4474 21 6 6.3451 -3.0751 -5.5182 22 6 6.9958 -4.3429 -4.9602 23 6 7.5578 -5.1738 -6.1172 24 6 6.4266 -5.5034 -7.0951 25 6 5.7924 -4.2019 -7.5912 26 6 4.4301 -0.6785 -4.9554 27 6 3.7653 -0.1154 -3.8821 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.9035 -0.5280 4.4375 32 1 1.8665 -2.5520 -2.1650 33 1 1.6467 -2.5987 -0.3992 34 1 0.3556 -1.9520 -1.4399 35 1 2.1024 1.1190 -2.2603 36 1 0.6814 0.1054 -2.6087 37 1 0.8494 -1.7954 -4.1114 38 1 2.0314 -2.7942 -6.0267 39 1 3.8092 -2.5438 -7.6604 40 1 5.2301 -1.5296 -7.3123 41 1 7.0940 -2.4844 -6.0456 42 1 5.9313 -2.4883 -4.6981 43 1 6.2505 -4.9274 -4.4209 44 1 7.8044 -4.0690 -4.2826 45 1 7.9839 -6.0986 -5.7281 46 1 8.3308 -4.6041 -6.6329 47 1 5.6724 -6.1061 -6.5893 48 1 6.8286 -6.0584 -7.9427 49 1 4.9772 -4.4334 -8.2767 50 1 6.5439 -3.6059 -8.1089 51 1 5.4367 -0.3662 -5.1913 52 1 4.2525 0.6370 -3.2797 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411325605.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:15 Heat of formation + Delta-G solvation = 14.605150 kcal Electronic energy + Delta-G solvation = -26775.858577 eV Core-core repulsion = 23353.123941 eV Total energy + Delta-G solvation = -3422.734637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.83128 -39.71668 -38.61568 -35.36518 -34.52765 -32.77434 -31.93440 -31.59883 -30.90960 -28.71678 -27.22063 -26.84376 -24.99281 -24.03971 -23.38712 -23.27392 -21.59008 -20.92053 -20.56498 -18.68798 -17.41175 -17.12711 -16.75064 -16.59321 -16.32344 -16.05087 -15.71196 -15.36137 -15.29317 -14.96198 -14.72932 -14.51141 -14.31510 -14.21376 -14.18771 -14.07276 -13.70343 -13.36063 -13.16876 -13.00756 -12.85505 -12.79255 -12.65665 -12.48778 -12.18639 -12.10335 -12.01283 -11.73934 -11.70270 -11.57263 -11.42327 -11.26884 -11.19201 -11.07958 -10.75391 -9.69708 -9.52638 -9.17908 -8.89145 -8.26804 -6.29329 0.44290 0.60760 1.29754 1.35591 1.45723 2.32441 2.70333 3.07357 3.19861 3.50284 3.81051 3.91503 3.95071 3.98691 4.05803 4.10181 4.21212 4.27517 4.34452 4.41396 4.46501 4.48065 4.53227 4.58950 4.62886 4.64427 4.65184 4.70103 4.71317 4.79152 4.83645 4.84345 4.90253 4.97086 5.00732 5.06796 5.09193 5.18405 5.22272 5.24516 5.26216 5.32788 5.41097 5.48806 5.57754 5.62951 5.74501 5.83864 6.04752 6.13362 6.18263 6.24804 6.41780 6.71102 6.77116 7.35152 8.90370 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.020090 B = 0.002727 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.362772 B =10263.966561 C =11015.242423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.184 3.816 3 H 0.034 0.966 4 C -0.501 4.501 5 H 0.036 0.964 6 C 0.010 3.990 7 N -0.951 5.951 8 Si 0.951 3.049 9 H -0.268 1.268 10 H -0.299 1.299 11 H -0.247 1.247 12 N -0.534 5.534 13 C 0.041 3.959 14 C 0.089 3.911 15 C -0.079 4.079 16 C -0.120 4.120 17 C -0.103 4.103 18 C -0.085 4.085 19 C 0.101 3.899 20 N -0.545 5.545 21 C 0.053 3.947 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.115 4.115 25 C 0.056 3.944 26 C -0.116 4.116 27 C -0.114 4.114 28 H 0.036 0.964 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.265 0.735 32 H 0.067 0.933 33 H 0.043 0.957 34 H 0.029 0.971 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.124 0.876 38 H 0.136 0.864 39 H 0.095 0.905 40 H 0.047 0.953 41 H 0.035 0.965 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.060 0.940 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.036 0.964 51 H 0.128 0.872 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.324 -3.630 -27.027 27.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.076 3.924 3 H 0.052 0.948 4 C -0.539 4.539 5 H 0.054 0.946 6 C -0.186 4.186 7 N -0.592 5.592 8 Si 0.778 3.222 9 H -0.194 1.194 10 H -0.227 1.227 11 H -0.171 1.171 12 N -0.257 5.257 13 C -0.107 4.107 14 C -0.038 4.038 15 C -0.079 4.079 16 C -0.138 4.138 17 C -0.121 4.121 18 C -0.086 4.086 19 C -0.026 4.026 20 N -0.270 5.270 21 C -0.074 4.074 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.153 4.153 25 C -0.072 4.072 26 C -0.134 4.134 27 C -0.132 4.132 28 H 0.055 0.945 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.142 0.858 38 H 0.154 0.846 39 H 0.113 0.887 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.101 0.899 49 H 0.102 0.898 50 H 0.054 0.946 51 H 0.146 0.854 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.525 -3.992 -26.567 27.428 hybrid contribution -0.668 1.101 0.705 1.468 sum 4.858 -2.891 -25.863 26.473 Atomic orbital electron populations 1.22698 0.99815 1.01412 1.00008 1.19593 0.90048 0.94349 0.88402 0.94801 1.21169 1.30284 1.12417 0.90047 0.94619 1.25774 0.97535 0.99995 0.95319 1.70049 1.47957 1.42626 0.98535 0.85834 0.78965 0.80090 0.77326 1.19449 1.22693 1.17137 1.62051 1.59251 1.03029 1.01407 1.22199 0.96610 0.90833 1.01022 1.21094 0.97567 0.96962 0.88152 1.19810 0.95155 0.97481 0.95490 1.21156 1.00471 0.96553 0.95659 1.21103 0.94580 0.99229 0.97179 1.19829 0.94610 0.96432 0.97697 1.20994 0.96768 0.90790 0.94046 1.61902 1.26223 1.22098 1.16759 1.22119 0.92078 0.97086 0.96155 1.21584 0.99630 0.96316 0.98176 1.21573 0.97805 0.99991 0.96248 1.21586 0.97629 0.96686 0.99395 1.22149 0.98725 0.94661 0.91634 1.21116 0.99768 0.97209 0.95348 1.21084 0.94203 1.00634 0.97321 0.94500 0.92045 0.92627 0.92604 0.91429 0.93809 0.95226 0.90670 0.93675 0.85844 0.84631 0.88667 0.93487 0.94636 0.91703 0.92696 0.91372 0.91315 0.91799 0.92118 0.89924 0.89789 0.94562 0.85399 0.86431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.50 7.92 71.99 0.57 -6.93 16 2 C 0.18 8.64 1.90 44.17 0.08 8.72 16 3 H 0.03 1.62 6.99 -2.39 -0.02 1.61 16 4 C -0.50 -28.95 8.49 25.60 0.22 -28.73 16 5 H 0.04 2.33 7.37 -2.91 -0.02 2.31 16 6 C 0.01 0.62 5.45 84.65 0.46 1.08 16 7 N -0.95 -60.24 13.96 21.44 0.30 -59.94 16 8 Si 0.95 45.16 24.37 68.60 1.67 46.83 16 9 H -0.27 -12.13 6.87 99.48 0.68 -11.45 16 10 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 11 H -0.25 -10.82 6.53 99.48 0.65 -10.17 16 12 N -0.53 -22.13 4.69 -906.01 -4.25 -26.38 16 13 C 0.04 1.62 8.26 127.69 1.05 2.67 16 14 C 0.09 2.96 4.69 85.56 0.40 3.36 16 15 C -0.08 -2.32 4.88 -19.87 -0.10 -2.42 16 16 C -0.12 -3.12 7.97 22.27 0.18 -2.94 16 17 C -0.10 -2.33 9.70 22.27 0.22 -2.12 16 18 C -0.08 -1.86 4.89 -19.87 -0.10 -1.95 16 19 C 0.10 1.73 5.12 85.56 0.44 2.16 16 20 N -0.54 -10.08 4.65 -900.94 -4.19 -14.27 16 21 C 0.05 1.06 5.16 86.33 0.45 1.50 16 22 C -0.12 -2.24 6.09 30.65 0.19 -2.05 16 23 C -0.12 -1.73 6.00 30.68 0.18 -1.54 16 24 C -0.12 -1.56 6.09 30.65 0.19 -1.37 16 25 C 0.06 0.79 5.46 86.33 0.47 1.26 16 26 C -0.12 -2.75 7.88 22.27 0.18 -2.57 16 27 C -0.11 -3.19 9.70 22.27 0.22 -2.98 16 28 H 0.04 1.58 3.27 -2.39 -0.01 1.57 16 29 H 0.06 2.13 6.91 -2.39 -0.02 2.12 16 30 H 0.05 2.30 6.42 -2.39 -0.02 2.29 16 31 H 0.26 15.72 8.31 -92.70 -0.77 14.95 16 32 H 0.07 2.38 6.16 -2.38 -0.01 2.37 16 33 H 0.04 1.98 6.76 -2.39 -0.02 1.97 16 34 H 0.03 1.05 6.46 -2.39 -0.02 1.04 16 35 H 0.07 2.45 7.87 -2.39 -0.02 2.43 16 36 H 0.05 1.39 7.00 -2.39 -0.02 1.37 16 37 H 0.12 2.98 8.02 -2.91 -0.02 2.96 16 38 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 39 H 0.10 1.35 7.93 -2.38 -0.02 1.33 16 40 H 0.05 0.74 8.07 -2.39 -0.02 0.72 16 41 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.06 1.54 5.75 -2.39 -0.01 1.52 16 43 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.08 1.01 8.01 -2.39 -0.02 0.99 16 50 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 51 H 0.13 2.58 7.95 -2.91 -0.02 2.56 16 52 H 0.12 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -66.53 384.34 -0.39 -66.91 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.79 Total: 21.70 kcal Atomic # 6 Polarization: -40.15 SS G_CDS: 5.29 Total: -34.86 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -8.14 Total: -100.59 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.67 Total: 46.83 kcal Total: -66.53 -0.39 -66.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411325605.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.519 kcal (2) G-P(sol) polarization free energy of solvation -66.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds