Wall clock time and date at job start Tue Mar 31 2020 11:43:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47240 * 2 1 4 4 C 1.50696 * 109.47215 * 239.99994 * 2 1 3 5 5 H 1.08005 * 119.99990 * 240.00459 * 4 2 1 6 6 C 1.37881 * 120.00144 * 59.99947 * 4 2 1 7 7 N 1.31509 * 119.99894 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00087 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47221 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47248 * 120.00015 * 8 6 4 11 11 H 1.48495 * 109.47136 * 240.00091 * 8 6 4 12 12 N 1.46906 * 109.47005 * 119.99870 * 2 1 3 13 13 C 1.46901 * 110.99793 * 58.95599 * 12 2 1 14 14 C 1.46898 * 110.99820 * 294.99916 * 12 2 1 15 15 C 1.50706 * 109.46563 * 189.99919 * 14 12 2 16 16 C 1.38237 * 120.00072 * 269.72291 * 15 14 12 17 17 C 1.38233 * 119.99894 * 179.77066 * 16 15 14 18 18 C 1.38236 * 120.00155 * 0.50879 * 17 16 15 19 19 C 1.50690 * 120.00230 * 179.72714 * 18 17 16 20 20 N 1.46904 * 109.47270 * 270.02108 * 19 18 17 21 21 C 1.46845 * 110.99937 * 294.21093 * 20 19 18 22 22 C 1.53040 * 109.52260 * 174.15464 * 21 20 19 23 23 C 1.53125 * 109.27683 * 59.18105 * 22 21 20 24 24 C 1.53114 * 109.15880 * 302.34530 * 23 22 21 25 25 C 1.46840 * 111.00161 * 170.00077 * 20 19 18 26 26 C 1.38235 * 119.99658 * 359.74652 * 18 17 16 27 27 C 1.38234 * 120.00461 * 0.02562 * 26 18 17 28 28 H 1.08997 * 109.47240 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47262 * 300.00203 * 1 2 3 30 30 H 1.09001 * 109.47097 * 60.00065 * 1 2 3 31 31 H 0.97000 * 120.00037 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47401 * 59.99808 * 13 12 2 33 33 H 1.09001 * 109.46874 * 299.99821 * 13 12 2 34 34 H 1.09004 * 109.46970 * 179.97438 * 13 12 2 35 35 H 1.08994 * 109.47410 * 309.99936 * 14 12 2 36 36 H 1.08999 * 109.47216 * 70.00266 * 14 12 2 37 37 H 1.08006 * 119.99586 * 0.02562 * 16 15 14 38 38 H 1.08001 * 119.99865 * 180.23815 * 17 16 15 39 39 H 1.09003 * 109.47502 * 30.02159 * 19 18 17 40 40 H 1.08998 * 109.47442 * 150.02523 * 19 18 17 41 41 H 1.08990 * 109.46626 * 294.17436 * 21 20 19 42 42 H 1.09009 * 109.46161 * 54.14488 * 21 20 19 43 43 H 1.09001 * 109.50669 * 299.24114 * 22 21 20 44 44 H 1.09001 * 109.50166 * 179.12105 * 22 21 20 45 45 H 1.08996 * 109.52391 * 182.43867 * 23 22 21 46 46 H 1.09004 * 109.52083 * 62.24984 * 23 22 21 47 47 H 1.09004 * 109.50581 * 297.71115 * 24 23 22 48 48 H 1.09000 * 109.50764 * 177.59470 * 24 23 22 49 49 H 1.09008 * 109.46415 * 305.85348 * 25 20 19 50 50 H 1.08991 * 109.46796 * 65.82230 * 25 20 19 51 51 H 1.07998 * 120.00212 * 179.97438 * 26 18 17 52 52 H 1.08003 * 120.00362 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1465 -2.2870 -3.6038 10 1 1.1661 -1.5867 -4.8161 11 1 3.1466 -0.1874 -4.8165 12 7 2.0197 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2460 14 6 1.6487 0.0392 2.4181 15 6 2.3679 -0.5572 3.6006 16 6 1.7822 -1.5811 4.3213 17 6 2.4440 -2.1313 5.4030 18 6 3.6869 -1.6505 5.7705 19 6 4.4056 -2.2461 6.9534 20 7 4.0341 -1.5139 8.1716 21 6 4.5200 -0.1291 8.1220 22 6 3.9926 0.6417 9.3344 23 6 4.4743 -0.0423 10.6169 24 6 3.9960 -1.4968 10.6208 25 6 4.5232 -2.2055 9.3711 26 6 4.2702 -0.6230 5.0529 27 6 3.6106 -0.0760 3.9683 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.7087 1.1612 -3.4844 32 1 1.8762 -2.6151 0.3647 33 1 0.4384 -2.0742 1.2639 34 1 1.9060 -2.5658 2.1436 35 1 1.9297 1.0870 2.3125 36 1 0.5722 -0.0345 2.5726 37 1 0.8093 -1.9539 4.0367 38 1 1.9881 -2.9338 5.9638 39 1 4.1247 -3.2940 7.0595 40 1 5.4821 -2.1724 6.7994 41 1 5.6098 -0.1258 8.1355 42 1 4.1668 0.3472 7.2072 43 1 2.9028 0.6507 9.3141 44 1 4.3661 1.6653 9.3055 45 1 4.0654 0.4781 11.4829 46 1 5.5634 -0.0169 10.6562 47 1 2.9062 -1.5215 10.6207 48 1 4.3718 -2.0011 11.5110 49 1 4.1725 -3.2376 9.3637 50 1 5.6130 -2.1926 9.3788 51 1 5.2411 -0.2471 5.3401 52 1 4.0662 0.7271 3.4079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411325606.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:18 Heat of formation + Delta-G solvation = 24.142840 kcal Electronic energy + Delta-G solvation = -26486.741951 eV Core-core repulsion = 23064.420900 eV Total energy + Delta-G solvation = -3422.321051 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.84631 -38.71075 -36.94543 -34.32491 -32.81359 -31.35572 -31.03333 -30.59783 -28.60104 -27.41270 -25.59897 -25.13703 -23.73564 -23.31835 -22.29139 -22.27655 -20.42337 -19.92720 -19.14011 -16.41314 -16.25997 -15.87565 -15.56058 -15.29331 -14.98742 -14.73285 -14.61596 -14.25818 -14.15486 -13.66335 -13.53727 -13.36690 -13.27488 -13.11599 -12.66136 -12.43770 -12.22169 -12.01248 -11.93372 -11.52590 -11.44951 -11.12375 -11.06162 -10.97669 -10.94605 -10.75266 -10.71454 -10.65491 -10.59465 -10.43816 -10.36659 -9.99946 -9.77410 -8.86888 -8.64432 -8.54669 -8.37895 -8.25696 -7.09927 -5.99645 -4.03000 1.54551 1.69026 3.30872 3.38732 3.43570 3.63523 4.13409 4.44004 4.52945 4.56295 4.64831 4.79112 4.94236 5.00257 5.14812 5.18283 5.22753 5.24644 5.27765 5.32057 5.34190 5.38985 5.44145 5.49504 5.60690 5.65379 5.69746 5.76869 5.81117 5.85144 5.93204 6.00401 6.09889 6.12324 6.27751 6.33387 6.36930 6.45837 6.65558 6.70292 6.74877 6.84602 6.87229 6.93217 6.93724 7.01625 7.14354 7.27296 7.50903 7.74089 7.85737 8.13920 8.40636 8.61933 9.03402 9.61933 11.07508 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.032585 B = 0.002252 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.096587 B =12432.637731 C =12564.219985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.210 3.790 3 H 0.039 0.961 4 C -0.497 4.497 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.528 5.528 13 C 0.032 3.968 14 C 0.087 3.913 15 C -0.056 4.056 16 C -0.115 4.115 17 C -0.100 4.100 18 C -0.091 4.091 19 C 0.099 3.901 20 N -0.532 5.532 21 C 0.051 3.949 22 C -0.117 4.117 23 C -0.122 4.122 24 C -0.116 4.116 25 C 0.055 3.945 26 C -0.116 4.116 27 C -0.101 4.101 28 H 0.030 0.970 29 H 0.007 0.993 30 H 0.088 0.912 31 H 0.259 0.741 32 H 0.071 0.929 33 H 0.017 0.983 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.117 0.883 38 H 0.116 0.884 39 H 0.080 0.920 40 H 0.039 0.961 41 H 0.029 0.971 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.073 0.927 50 H 0.030 0.970 51 H 0.112 0.888 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.817 -3.621 24.799 25.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.104 3.896 3 H 0.057 0.943 4 C -0.536 4.536 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.251 5.251 13 C -0.117 4.117 14 C -0.041 4.041 15 C -0.056 4.056 16 C -0.134 4.134 17 C -0.119 4.119 18 C -0.092 4.092 19 C -0.028 4.028 20 N -0.257 5.257 21 C -0.077 4.077 22 C -0.155 4.155 23 C -0.159 4.159 24 C -0.154 4.154 25 C -0.073 4.073 26 C -0.135 4.135 27 C -0.120 4.120 28 H 0.049 0.951 29 H 0.026 0.974 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.035 0.965 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.052 0.948 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.098 0.902 40 H 0.057 0.943 41 H 0.047 0.953 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.090 0.910 48 H 0.083 0.917 49 H 0.092 0.908 50 H 0.049 0.951 51 H 0.130 0.870 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.756 -3.510 24.650 25.555 hybrid contribution 0.234 -0.411 -0.969 1.079 sum 5.989 -3.921 23.681 24.739 Atomic orbital electron populations 1.22406 1.00905 0.99365 1.00522 1.19336 0.89744 0.94553 0.85972 0.94332 1.21159 1.30372 1.12408 0.89621 0.91897 1.24935 0.95291 0.95169 0.99010 1.69894 1.37162 1.23131 1.23246 0.86470 0.78507 0.79677 0.82928 1.19763 1.21209 1.21089 1.62389 1.59424 1.01957 1.01379 1.22293 0.96937 0.91281 1.01157 1.21045 0.96157 0.97924 0.88971 1.20006 0.94761 0.95393 0.95485 1.21052 1.00061 0.96680 0.95597 1.20843 0.94326 0.99953 0.96769 1.19507 0.95638 0.97622 0.96452 1.20970 0.96796 0.97495 0.87571 1.61924 1.60202 1.02206 1.01333 1.22191 0.96832 0.89056 0.99621 1.21586 1.01817 0.98246 0.93841 1.21586 1.00409 0.95981 0.97957 1.21579 1.01778 0.95501 0.96556 1.22086 0.97107 0.97937 0.90138 1.20932 0.99551 0.96835 0.96185 1.20994 0.94485 1.00280 0.96197 0.95070 0.97384 0.89347 0.93100 0.91038 0.96495 0.93558 0.90820 0.94761 0.86541 0.86620 0.90168 0.94276 0.95266 0.89776 0.91053 0.91661 0.91941 0.92465 0.91043 0.91742 0.90831 0.95149 0.86961 0.86049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.18 8.28 37.16 0.31 -3.88 16 2 C 0.21 5.28 2.34 -68.86 -0.16 5.12 16 3 H 0.04 1.06 8.03 -51.93 -0.42 0.65 16 4 C -0.50 -13.62 7.94 -34.44 -0.27 -13.90 16 5 H 0.06 1.74 6.75 -52.48 -0.35 1.39 16 6 C 0.06 1.57 5.30 -17.82 -0.09 1.47 16 7 N -0.89 -25.49 11.32 55.43 0.63 -24.87 16 8 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 12 N -0.53 -11.44 4.73 -237.73 -1.13 -12.56 16 13 C 0.03 0.64 8.56 60.07 0.51 1.15 16 14 C 0.09 1.61 4.56 -4.97 -0.02 1.58 16 15 C -0.06 -0.90 4.88 -104.62 -0.51 -1.41 16 16 C -0.12 -1.69 7.92 -39.58 -0.31 -2.00 16 17 C -0.10 -1.30 9.70 -39.58 -0.38 -1.69 16 18 C -0.09 -1.13 4.89 -104.63 -0.51 -1.64 16 19 C 0.10 1.00 5.12 -4.98 -0.03 0.98 16 20 N -0.53 -5.22 4.65 -236.12 -1.10 -6.32 16 21 C 0.05 0.48 5.16 -3.83 -0.02 0.46 16 22 C -0.12 -0.97 6.09 -26.65 -0.16 -1.13 16 23 C -0.12 -0.87 6.00 -26.61 -0.16 -1.03 16 24 C -0.12 -0.83 6.09 -26.65 -0.16 -1.00 16 25 C 0.06 0.44 5.46 -3.83 -0.02 0.42 16 26 C -0.12 -1.50 7.88 -39.58 -0.31 -1.81 16 27 C -0.10 -1.51 9.70 -39.58 -0.38 -1.89 16 28 H 0.03 0.73 6.38 -51.93 -0.33 0.40 16 29 H 0.01 0.16 6.75 -51.93 -0.35 -0.19 16 30 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.07 1.54 6.53 -51.93 -0.34 1.20 16 33 H 0.02 0.33 6.28 -51.93 -0.33 0.01 16 34 H 0.05 0.83 5.91 -51.93 -0.31 0.52 16 35 H 0.07 1.36 7.94 -51.93 -0.41 0.95 16 36 H 0.03 0.63 6.88 -51.93 -0.36 0.28 16 37 H 0.12 1.63 8.00 -52.48 -0.42 1.21 16 38 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 39 H 0.08 0.75 7.93 -51.93 -0.41 0.33 16 40 H 0.04 0.38 8.07 -51.93 -0.42 -0.03 16 41 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.08 0.90 5.75 -51.92 -0.30 0.60 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.07 0.55 8.02 -51.92 -0.42 0.13 16 50 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 51 H 0.11 1.25 7.95 -52.49 -0.42 0.83 16 52 H 0.12 1.77 8.06 -52.48 -0.42 1.34 16 LS Contribution 390.23 15.07 5.88 5.88 Total: -1.00 -28.52 390.23 -12.69 -41.20 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -9.26 Total: 0.41 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: -2.70 Total: -20.17 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: -1.60 Total: -43.74 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.52 -12.69 -41.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411325606.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.346 kcal (2) G-P(sol) polarization free energy of solvation -28.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds