Wall clock time and date at job start Tue Mar 31 2020 11:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47240 * 2 1 4 4 C 1.50696 * 109.47215 * 239.99994 * 2 1 3 5 5 H 1.08005 * 119.99990 * 240.00459 * 4 2 1 6 6 C 1.37881 * 120.00144 * 59.99947 * 4 2 1 7 7 N 1.31509 * 119.99894 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00087 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47221 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47248 * 120.00015 * 8 6 4 11 11 H 1.48495 * 109.47136 * 240.00091 * 8 6 4 12 12 N 1.46906 * 109.47005 * 119.99870 * 2 1 3 13 13 C 1.46901 * 110.99793 * 58.95599 * 12 2 1 14 14 C 1.46898 * 110.99820 * 294.99916 * 12 2 1 15 15 C 1.50706 * 109.46563 * 189.99919 * 14 12 2 16 16 C 1.38237 * 120.00072 * 269.72291 * 15 14 12 17 17 C 1.38233 * 119.99894 * 179.77066 * 16 15 14 18 18 C 1.38236 * 120.00155 * 0.50879 * 17 16 15 19 19 C 1.50690 * 120.00230 * 179.72714 * 18 17 16 20 20 N 1.46904 * 109.47270 * 270.02108 * 19 18 17 21 21 C 1.46845 * 110.99937 * 294.21093 * 20 19 18 22 22 C 1.53040 * 109.52260 * 174.15464 * 21 20 19 23 23 C 1.53125 * 109.27683 * 59.18105 * 22 21 20 24 24 C 1.53114 * 109.15880 * 302.34530 * 23 22 21 25 25 C 1.46840 * 111.00161 * 170.00077 * 20 19 18 26 26 C 1.38235 * 119.99658 * 359.74652 * 18 17 16 27 27 C 1.38234 * 120.00461 * 0.02562 * 26 18 17 28 28 H 1.08997 * 109.47240 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47262 * 300.00203 * 1 2 3 30 30 H 1.09001 * 109.47097 * 60.00065 * 1 2 3 31 31 H 0.97000 * 120.00037 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47401 * 59.99808 * 13 12 2 33 33 H 1.09001 * 109.46874 * 299.99821 * 13 12 2 34 34 H 1.09004 * 109.46970 * 179.97438 * 13 12 2 35 35 H 1.08994 * 109.47410 * 309.99936 * 14 12 2 36 36 H 1.08999 * 109.47216 * 70.00266 * 14 12 2 37 37 H 1.08006 * 119.99586 * 0.02562 * 16 15 14 38 38 H 1.08001 * 119.99865 * 180.23815 * 17 16 15 39 39 H 1.09003 * 109.47502 * 30.02159 * 19 18 17 40 40 H 1.08998 * 109.47442 * 150.02523 * 19 18 17 41 41 H 1.08990 * 109.46626 * 294.17436 * 21 20 19 42 42 H 1.09009 * 109.46161 * 54.14488 * 21 20 19 43 43 H 1.09001 * 109.50669 * 299.24114 * 22 21 20 44 44 H 1.09001 * 109.50166 * 179.12105 * 22 21 20 45 45 H 1.08996 * 109.52391 * 182.43867 * 23 22 21 46 46 H 1.09004 * 109.52083 * 62.24984 * 23 22 21 47 47 H 1.09004 * 109.50581 * 297.71115 * 24 23 22 48 48 H 1.09000 * 109.50764 * 177.59470 * 24 23 22 49 49 H 1.09008 * 109.46415 * 305.85348 * 25 20 19 50 50 H 1.08991 * 109.46796 * 65.82230 * 25 20 19 51 51 H 1.07998 * 120.00212 * 179.97438 * 26 18 17 52 52 H 1.08003 * 120.00362 * 179.97438 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1465 -2.2870 -3.6038 10 1 1.1661 -1.5867 -4.8161 11 1 3.1466 -0.1874 -4.8165 12 7 2.0197 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2460 14 6 1.6487 0.0392 2.4181 15 6 2.3679 -0.5572 3.6006 16 6 1.7822 -1.5811 4.3213 17 6 2.4440 -2.1313 5.4030 18 6 3.6869 -1.6505 5.7705 19 6 4.4056 -2.2461 6.9534 20 7 4.0341 -1.5139 8.1716 21 6 4.5200 -0.1291 8.1220 22 6 3.9926 0.6417 9.3344 23 6 4.4743 -0.0423 10.6169 24 6 3.9960 -1.4968 10.6208 25 6 4.5232 -2.2055 9.3711 26 6 4.2702 -0.6230 5.0529 27 6 3.6106 -0.0760 3.9683 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.7087 1.1612 -3.4844 32 1 1.8762 -2.6151 0.3647 33 1 0.4384 -2.0742 1.2639 34 1 1.9060 -2.5658 2.1436 35 1 1.9297 1.0870 2.3125 36 1 0.5722 -0.0345 2.5726 37 1 0.8093 -1.9539 4.0367 38 1 1.9881 -2.9338 5.9638 39 1 4.1247 -3.2940 7.0595 40 1 5.4821 -2.1724 6.7994 41 1 5.6098 -0.1258 8.1355 42 1 4.1668 0.3472 7.2072 43 1 2.9028 0.6507 9.3141 44 1 4.3661 1.6653 9.3055 45 1 4.0654 0.4781 11.4829 46 1 5.5634 -0.0169 10.6562 47 1 2.9062 -1.5215 10.6207 48 1 4.3718 -2.0011 11.5110 49 1 4.1725 -3.2376 9.3637 50 1 5.6130 -2.1926 9.3788 51 1 5.2411 -0.2471 5.3401 52 1 4.0662 0.7271 3.4079 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411325606.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:43:17 Heat of formation + Delta-G solvation = 9.264477 kcal Electronic energy + Delta-G solvation = -26487.387125 eV Core-core repulsion = 23064.420900 eV Total energy + Delta-G solvation = -3422.966226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.82541 -39.67491 -38.49896 -35.37577 -34.51657 -32.51152 -31.93601 -31.53411 -30.31558 -28.73714 -27.27096 -26.74173 -24.98241 -24.02988 -23.39738 -23.28097 -21.63160 -20.88406 -20.55309 -18.25334 -17.27390 -17.04809 -16.79832 -16.57650 -16.17758 -16.12328 -15.62475 -15.29262 -15.14542 -14.93328 -14.79380 -14.39774 -14.29519 -14.19519 -14.16415 -13.66004 -13.34871 -13.21598 -13.10755 -12.92672 -12.71192 -12.64656 -12.56573 -12.51689 -12.21937 -12.15463 -12.07769 -12.00581 -11.72735 -11.59108 -11.53134 -11.26074 -11.17304 -10.90048 -10.50229 -9.70164 -9.52439 -9.18131 -8.82230 -8.10707 -6.21420 0.44506 0.60191 1.41058 1.42976 1.54844 2.42807 2.72722 3.18220 3.20714 3.60886 3.81111 3.91892 3.95451 4.00290 4.07225 4.10833 4.20905 4.28371 4.35672 4.49516 4.55164 4.56483 4.63050 4.65389 4.66924 4.70384 4.72089 4.77659 4.84545 4.87326 4.89042 4.92084 4.98288 5.07687 5.10155 5.13470 5.18296 5.19112 5.25126 5.26136 5.32927 5.49643 5.52377 5.57584 5.70754 5.73776 5.79785 5.84621 6.12107 6.17953 6.19450 6.24259 6.48549 6.73390 6.92273 7.47650 8.95569 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.032585 B = 0.002252 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.096587 B =12432.637731 C =12564.219985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.215 3.785 3 H 0.006 0.994 4 C -0.512 4.512 5 H 0.056 0.944 6 C 0.009 3.991 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.269 1.269 10 H -0.280 1.280 11 H -0.281 1.281 12 N -0.538 5.538 13 C 0.040 3.960 14 C 0.093 3.907 15 C -0.076 4.076 16 C -0.121 4.121 17 C -0.100 4.100 18 C -0.084 4.084 19 C 0.101 3.899 20 N -0.542 5.542 21 C 0.051 3.949 22 C -0.116 4.116 23 C -0.120 4.120 24 C -0.114 4.114 25 C 0.054 3.946 26 C -0.114 4.114 27 C -0.114 4.114 28 H 0.032 0.968 29 H 0.025 0.975 30 H 0.062 0.938 31 H 0.261 0.739 32 H 0.053 0.947 33 H 0.018 0.982 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.034 0.966 37 H 0.120 0.880 38 H 0.137 0.863 39 H 0.093 0.907 40 H 0.045 0.955 41 H 0.033 0.967 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.061 0.939 47 H 0.062 0.938 48 H 0.080 0.920 49 H 0.081 0.919 50 H 0.034 0.966 51 H 0.130 0.870 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.722 -5.152 26.724 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.107 3.893 3 H 0.024 0.976 4 C -0.551 4.551 5 H 0.074 0.926 6 C -0.189 4.189 7 N -0.561 5.561 8 Si 0.786 3.214 9 H -0.193 1.193 10 H -0.206 1.206 11 H -0.207 1.207 12 N -0.261 5.261 13 C -0.108 4.108 14 C -0.034 4.034 15 C -0.077 4.077 16 C -0.140 4.140 17 C -0.119 4.119 18 C -0.085 4.085 19 C -0.026 4.026 20 N -0.267 5.267 21 C -0.077 4.077 22 C -0.154 4.154 23 C -0.157 4.157 24 C -0.152 4.152 25 C -0.073 4.073 26 C -0.132 4.132 27 C -0.132 4.132 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.036 0.964 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.052 0.948 37 H 0.138 0.862 38 H 0.155 0.845 39 H 0.111 0.889 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.081 0.919 48 H 0.099 0.901 49 H 0.100 0.900 50 H 0.052 0.948 51 H 0.148 0.852 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.663 -5.047 26.597 27.879 hybrid contribution -0.015 0.085 -1.448 1.450 sum 6.648 -4.961 25.149 26.482 Atomic orbital electron populations 1.22198 1.00300 0.99222 1.00027 1.19087 0.90068 0.92929 0.87166 0.97642 1.21393 1.30452 1.12355 0.90864 0.92618 1.25703 0.95468 0.95865 1.01852 1.70018 1.37923 1.24211 1.23928 0.85476 0.78051 0.78608 0.79298 1.19322 1.20614 1.20731 1.62266 1.59754 1.02684 1.01443 1.22215 0.96913 0.90287 1.01355 1.20975 0.96452 0.97353 0.88637 1.19811 0.95523 0.96923 0.95420 1.21125 1.00372 0.96388 0.96071 1.21087 0.94435 1.00157 0.96184 1.19810 0.95338 0.96704 0.96651 1.20972 0.96800 0.97963 0.86871 1.61920 1.60638 1.02352 1.01753 1.22168 0.96984 0.89123 0.99423 1.21577 1.01027 0.98702 0.94120 1.21580 1.00649 0.95997 0.97509 1.21579 1.01247 0.95548 0.96847 1.22158 0.97345 0.98265 0.89575 1.21106 1.00100 0.96679 0.95312 1.21057 0.94448 1.00615 0.97128 0.94867 0.95631 0.91961 0.92987 0.92854 0.96391 0.91251 0.91757 0.94821 0.86157 0.84536 0.88902 0.93695 0.94923 0.91321 0.92246 0.91023 0.91104 0.92050 0.91890 0.90137 0.90030 0.94793 0.85224 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.80 8.28 71.98 0.60 -7.21 16 2 C 0.21 11.10 2.34 44.17 0.10 11.21 16 3 H 0.01 0.33 8.03 -2.39 -0.02 0.31 16 4 C -0.51 -28.61 7.94 25.60 0.20 -28.40 16 5 H 0.06 3.13 6.75 -2.91 -0.02 3.11 16 6 C 0.01 0.53 5.30 84.66 0.45 0.97 16 7 N -0.92 -53.42 11.32 21.45 0.24 -53.18 16 8 Si 0.96 44.29 29.54 68.60 2.03 46.31 16 9 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 10 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 N -0.54 -23.68 4.73 -906.03 -4.29 -27.96 16 13 C 0.04 1.62 8.56 127.69 1.09 2.71 16 14 C 0.09 3.50 4.56 85.56 0.39 3.89 16 15 C -0.08 -2.43 4.88 -19.86 -0.10 -2.53 16 16 C -0.12 -3.38 7.92 22.27 0.18 -3.21 16 17 C -0.10 -2.39 9.70 22.27 0.22 -2.17 16 18 C -0.08 -1.90 4.89 -19.87 -0.10 -2.00 16 19 C 0.10 1.77 5.12 85.55 0.44 2.21 16 20 N -0.54 -9.36 4.65 -900.94 -4.19 -13.55 16 21 C 0.05 0.88 5.16 86.33 0.45 1.33 16 22 C -0.12 -1.76 6.09 30.65 0.19 -1.57 16 23 C -0.12 -1.45 6.00 30.67 0.18 -1.26 16 24 C -0.11 -1.36 6.09 30.65 0.19 -1.17 16 25 C 0.05 0.72 5.46 86.33 0.47 1.20 16 26 C -0.11 -2.78 7.88 22.27 0.18 -2.60 16 27 C -0.11 -3.37 9.70 22.27 0.22 -3.15 16 28 H 0.03 1.57 6.38 -2.39 -0.02 1.56 16 29 H 0.02 1.12 6.75 -2.39 -0.02 1.10 16 30 H 0.06 3.41 6.07 -2.39 -0.01 3.39 16 31 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.05 2.31 6.53 -2.39 -0.02 2.29 16 33 H 0.02 0.70 6.28 -2.39 -0.01 0.69 16 34 H 0.07 2.43 5.91 -2.38 -0.01 2.42 16 35 H 0.06 2.47 7.94 -2.39 -0.02 2.45 16 36 H 0.03 1.25 6.88 -2.39 -0.02 1.23 16 37 H 0.12 3.21 8.00 -2.91 -0.02 3.19 16 38 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 39 H 0.09 1.42 7.93 -2.39 -0.02 1.40 16 40 H 0.04 0.75 8.07 -2.39 -0.02 0.73 16 41 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.07 1.39 5.75 -2.38 -0.01 1.38 16 43 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.06 0.70 8.14 -2.39 -0.02 0.69 16 47 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.08 0.97 8.02 -2.38 -0.02 0.95 16 50 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 51 H 0.13 2.67 7.95 -2.91 -0.02 2.64 16 52 H 0.12 3.46 8.06 -2.91 -0.02 3.43 16 Total: -1.00 -61.15 390.23 0.00 -61.15 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.87 Total: 18.98 kcal Atomic # 6 Polarization: -37.09 SS G_CDS: 5.34 Total: -31.75 kcal Atomic # 7 Polarization: -86.47 SS G_CDS: -8.23 Total: -94.70 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -61.15 0.00 -61.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411325606.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.416 kcal (2) G-P(sol) polarization free energy of solvation -61.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds