Wall clock time and date at job start Tue Mar 31 2020 11:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47114 * 2 1 4 4 H 1.08990 * 109.48694 * 305.82853 * 3 2 1 5 5 C 1.53054 * 109.48972 * 65.86908 * 3 2 1 6 6 N 1.46957 * 109.36344 * 178.34433 * 5 3 2 7 7 C 1.46894 * 110.99692 * 176.83268 * 6 5 3 8 8 H 1.08996 * 109.47439 * 304.33591 * 7 6 5 9 9 C 1.53006 * 109.46966 * 184.33571 * 7 6 5 10 10 C 1.53010 * 109.47314 * 64.33700 * 7 6 5 11 11 C 1.50699 * 109.46954 * 183.72070 * 10 7 6 12 12 H 1.07995 * 120.00375 * 5.11889 * 11 10 7 13 13 C 1.37876 * 119.99268 * 185.11301 * 11 10 7 14 14 N 1.31511 * 120.00530 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99725 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47068 * 90.00017 * 15 13 11 17 17 H 1.48494 * 109.47327 * 210.00355 * 15 13 11 18 18 H 1.48507 * 109.47146 * 330.00281 * 15 13 11 19 19 C 1.46960 * 110.89925 * 300.71594 * 6 5 3 20 20 C 1.53046 * 109.36327 * 59.30684 * 19 6 5 21 21 N 1.46951 * 109.36653 * 301.59754 * 20 19 6 22 22 C 1.46906 * 111.00095 * 183.19222 * 21 20 19 23 23 C 1.50701 * 109.47143 * 52.03341 * 22 21 20 24 24 C 1.38233 * 119.99925 * 269.73212 * 23 22 21 25 25 C 1.38240 * 119.99936 * 179.79233 * 24 23 22 26 26 C 1.38239 * 119.99713 * 0.45524 * 25 24 23 27 27 C 1.38240 * 119.99899 * 359.77141 * 26 25 24 28 28 C 1.38228 * 120.00256 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.47638 * 183.65240 * 1 2 3 30 30 H 1.09003 * 109.47733 * 303.65762 * 1 2 3 31 31 H 1.09004 * 109.46480 * 63.65661 * 1 2 3 32 32 H 1.08995 * 109.47074 * 239.99518 * 2 1 3 33 33 H 1.09006 * 109.46519 * 119.99540 * 2 1 3 34 34 H 1.08998 * 109.49022 * 298.33849 * 5 3 2 35 35 H 1.09003 * 109.48774 * 58.39719 * 5 3 2 36 36 H 1.08997 * 109.47136 * 59.99952 * 9 7 6 37 37 H 1.09007 * 109.47148 * 180.02562 * 9 7 6 38 38 H 1.09004 * 109.46942 * 299.99911 * 9 7 6 39 39 H 1.08991 * 109.46640 * 303.72435 * 10 7 6 40 40 H 1.09007 * 109.46623 * 63.72178 * 10 7 6 41 41 H 0.97001 * 119.99800 * 179.97438 * 14 13 11 42 42 H 1.09005 * 109.48424 * 299.33803 * 19 6 5 43 43 H 1.08997 * 109.50412 * 179.28767 * 19 6 5 44 44 H 1.09000 * 109.48629 * 181.63289 * 20 19 6 45 45 H 1.08999 * 109.50850 * 61.57854 * 20 19 6 46 46 H 1.08994 * 109.47137 * 172.03790 * 22 21 20 47 47 H 1.08998 * 109.46539 * 292.03701 * 22 21 20 48 48 H 1.07994 * 120.00217 * 359.97438 * 24 23 22 49 49 H 1.07992 * 119.99991 * 180.25111 * 25 24 23 50 50 H 1.07995 * 119.99811 * 179.79196 * 26 25 24 51 51 H 1.07995 * 119.99528 * 179.97438 * 27 26 25 52 52 H 1.07995 * 120.00593 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5941 1.9858 -0.8330 5 6 1.6541 2.1206 1.3168 6 7 2.1794 3.4930 1.3304 7 6 1.7654 4.2030 2.5478 8 1 0.6789 4.1780 2.6313 9 6 2.2381 5.6564 2.4763 10 6 2.3866 3.5243 3.7704 11 6 1.8894 4.1958 5.0245 12 1 1.1372 4.9682 4.9616 13 6 2.3947 3.8239 6.2522 14 7 3.3109 2.8835 6.3288 15 14 1.7780 4.6557 7.8069 16 1 0.6105 3.9077 8.3388 17 1 2.8607 4.6711 8.8230 18 1 1.3722 6.0498 7.4948 19 6 3.6423 3.4957 1.1907 20 6 4.0277 2.8179 -0.1262 21 7 3.5029 1.4453 -0.1396 22 6 3.9170 0.7352 -1.3571 23 6 5.4110 0.8464 -1.5200 24 6 5.9518 1.8991 -2.2344 25 6 7.3225 2.0035 -2.3802 26 6 8.1518 1.0501 -1.8196 27 6 7.6107 -0.0051 -1.1092 28 6 6.2403 -0.1072 -0.9598 29 1 -0.3634 -1.0255 0.0655 30 1 -0.3635 0.5696 0.8554 31 1 -0.3632 0.4561 -0.9210 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 0.5682 2.1455 1.4084 35 1 2.0770 1.5613 2.1514 36 1 1.7956 6.1400 1.6054 37 1 1.9312 6.1833 3.3799 38 1 3.3246 5.6814 2.3928 39 1 2.1031 2.4720 3.7848 40 1 3.4723 3.6075 3.7196 41 1 3.6666 2.6222 7.1925 42 1 4.0881 2.9521 2.0237 43 1 4.0060 4.5233 1.1909 44 1 5.1135 2.7929 -0.2182 45 1 3.6048 3.3770 -0.9608 46 1 3.6373 -0.3153 -1.2778 47 1 3.4231 1.1784 -2.2218 48 1 5.3037 2.6414 -2.6761 49 1 7.7453 2.8281 -2.9349 50 1 9.2225 1.1299 -1.9364 51 1 8.2586 -0.7501 -0.6716 52 1 5.8174 -0.9318 -0.4052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411522359.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:11 Heat of formation + Delta-G solvation = 26.888568 kcal Electronic energy + Delta-G solvation = -27599.571727 eV Core-core repulsion = 24177.369740 eV Total energy + Delta-G solvation = -3422.201988 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.01668 -38.82358 -36.44826 -33.97905 -33.02944 -31.72301 -30.95267 -30.22244 -29.19844 -27.13242 -26.48453 -24.39958 -23.78435 -23.03883 -22.61202 -21.42256 -21.01528 -19.58844 -18.43893 -16.84159 -16.51624 -15.93129 -15.59649 -15.27205 -14.98925 -14.61572 -14.44168 -14.03796 -13.97941 -13.64872 -13.48962 -13.32563 -13.21651 -12.97905 -12.69754 -12.32983 -12.21560 -12.01545 -11.76742 -11.70596 -11.37197 -11.17412 -11.14967 -11.00810 -10.91672 -10.78885 -10.75710 -10.57477 -10.43640 -10.16161 -9.95624 -9.74938 -9.56530 -9.05115 -8.94387 -8.81894 -8.32372 -8.10664 -7.40619 -5.97869 -3.99997 1.27056 1.35927 3.32112 3.38724 3.41588 3.63937 4.16632 4.44928 4.57637 4.69270 4.78548 4.93924 4.99321 5.04638 5.13295 5.25906 5.31725 5.37192 5.43826 5.50238 5.54294 5.57089 5.61955 5.66704 5.77320 5.79862 5.89707 5.94596 5.99944 6.03266 6.05694 6.13118 6.19827 6.26882 6.35299 6.39323 6.40829 6.45457 6.46100 6.53188 6.56564 6.61967 6.85781 6.93789 6.99588 7.05830 7.20632 7.27285 7.62150 7.63914 7.76691 7.92358 8.04281 8.46487 9.06442 9.63350 11.13039 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.003499 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.792133 B = 7999.333664 C = 8857.684438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C 0.092 3.908 4 H 0.044 0.956 5 C 0.061 3.939 6 N -0.539 5.539 7 C 0.080 3.920 8 H 0.066 0.934 9 C -0.128 4.128 10 C -0.001 4.001 11 C -0.514 4.514 12 H 0.056 0.944 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.888 3.112 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.052 3.948 20 C 0.060 3.940 21 N -0.526 5.526 22 C 0.091 3.909 23 C -0.076 4.076 24 C -0.114 4.114 25 C -0.123 4.123 26 C -0.123 4.123 27 C -0.122 4.122 28 C -0.098 4.098 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.037 0.963 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.013 0.987 40 H 0.022 0.978 41 H 0.259 0.741 42 H 0.052 0.948 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.033 0.967 46 H 0.085 0.915 47 H 0.038 0.962 48 H 0.118 0.882 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.120 0.880 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.728 -5.435 -18.959 20.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.017 4.017 4 H 0.062 0.938 5 C -0.067 4.067 6 N -0.263 5.263 7 C -0.027 4.027 8 H 0.085 0.915 9 C -0.185 4.185 10 C -0.039 4.039 11 C -0.553 4.553 12 H 0.074 0.926 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.717 3.283 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.076 4.076 20 C -0.068 4.068 21 N -0.251 5.251 22 C -0.036 4.036 23 C -0.077 4.077 24 C -0.132 4.132 25 C -0.141 4.141 26 C -0.142 4.142 27 C -0.140 4.140 28 C -0.116 4.116 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.031 0.969 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.096 0.904 45 H 0.051 0.949 46 H 0.103 0.897 47 H 0.056 0.944 48 H 0.136 0.864 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.138 0.862 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.818 -5.505 -18.833 19.989 hybrid contribution -0.178 0.415 1.061 1.153 sum 3.639 -5.090 -17.772 18.841 Atomic orbital electron populations 1.21796 0.95546 1.01550 1.02061 1.21620 0.95732 0.95947 1.02444 1.21726 0.86433 0.95505 0.98018 0.93843 1.22150 0.99472 0.89437 0.95659 1.62561 1.09942 1.14600 1.39218 1.21811 0.99145 0.93538 0.88187 0.91535 1.21720 1.00293 0.96015 1.00518 1.19665 0.96703 0.95632 0.91908 1.21157 1.22457 1.20443 0.91240 0.92616 1.25005 0.95078 0.95174 0.99068 1.69970 1.28577 1.30066 1.24700 0.86652 0.78421 0.79966 0.83310 1.20748 1.21306 1.19878 1.22152 0.89311 1.00016 0.96169 1.22260 0.99633 0.87404 0.97527 1.62218 1.10830 1.16315 1.35768 1.21110 0.90816 1.00099 0.91556 1.19794 0.95368 0.95098 0.97423 1.21078 0.95232 0.97661 0.99258 1.21093 0.93554 0.99076 1.00355 1.21130 0.99611 0.95004 0.98420 1.21155 0.95206 0.98441 0.99152 1.21047 0.93235 0.98973 0.98393 0.92801 0.91968 0.93059 0.92063 0.91006 0.90833 0.92967 0.94373 0.91603 0.93560 0.96869 0.95932 0.93096 0.92978 0.90600 0.90401 0.94903 0.89718 0.94403 0.86426 0.86276 0.86364 0.86183 0.85913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.76 37.16 0.36 -1.30 16 2 C -0.12 -1.44 5.24 -26.73 -0.14 -1.58 16 3 C 0.09 1.30 2.02 -67.65 -0.14 1.16 16 4 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 5 C 0.06 1.06 4.26 -3.77 -0.02 1.04 16 6 N -0.54 -9.93 4.70 -226.48 -1.06 -10.99 16 7 C 0.08 1.68 2.40 -67.71 -0.16 1.52 16 8 H 0.07 1.42 8.12 -51.93 -0.42 1.00 16 9 C -0.13 -2.48 8.78 37.16 0.33 -2.16 16 10 C 0.00 -0.03 3.74 -27.88 -0.10 -0.13 16 11 C -0.51 -14.33 8.29 -34.44 -0.29 -14.62 16 12 H 0.06 1.51 7.17 -52.49 -0.38 1.13 16 13 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 14 N -0.89 -26.96 13.29 55.43 0.74 -26.22 16 15 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 19 C 0.05 0.93 4.82 -3.77 -0.02 0.91 16 20 C 0.06 0.89 4.85 -3.77 -0.02 0.88 16 21 N -0.53 -7.55 4.63 -227.94 -1.05 -8.60 16 22 C 0.09 1.08 4.70 -4.97 -0.02 1.05 16 23 C -0.08 -0.90 4.38 -104.62 -0.46 -1.36 16 24 C -0.11 -1.25 7.81 -39.58 -0.31 -1.56 16 25 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16 26 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 27 C -0.12 -1.28 10.05 -39.58 -0.40 -1.68 16 28 C -0.10 -1.13 9.70 -39.58 -0.38 -1.51 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.74 6.47 -51.93 -0.34 0.41 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.65 6.13 -51.93 -0.32 0.33 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.23 6.58 -51.93 -0.34 0.89 16 35 H 0.05 1.06 6.50 -51.93 -0.34 0.72 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 1.35 6.97 -51.93 -0.36 0.98 16 38 H 0.05 0.89 6.35 -51.93 -0.33 0.56 16 39 H 0.01 0.36 6.40 -51.93 -0.33 0.03 16 40 H 0.02 0.63 6.68 -51.92 -0.35 0.28 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.05 1.10 6.56 -51.93 -0.34 0.76 16 43 H 0.08 1.33 6.16 -51.93 -0.32 1.01 16 44 H 0.08 1.15 5.81 -51.93 -0.30 0.85 16 45 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.92 6.31 -51.93 -0.33 0.59 16 47 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 48 H 0.12 1.18 8.05 -52.49 -0.42 0.76 16 49 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 50 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 51 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 52 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 387.54 15.07 5.84 5.84 Total: -1.00 -30.03 387.54 -12.22 -42.24 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -9.00 Total: 2.10 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -2.66 Total: -21.04 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: -1.38 Total: -45.82 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.03 -12.22 -42.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411522359.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.133 kcal (2) G-P(sol) polarization free energy of solvation -30.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds