Wall clock time and date at job start Tue Mar 31 2020 11:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47114 * 2 1 4 4 H 1.08990 * 109.48694 * 305.82853 * 3 2 1 5 5 C 1.53054 * 109.48972 * 65.86908 * 3 2 1 6 6 N 1.46957 * 109.36344 * 178.34433 * 5 3 2 7 7 C 1.46894 * 110.99692 * 176.83268 * 6 5 3 8 8 H 1.08996 * 109.47439 * 304.33591 * 7 6 5 9 9 C 1.53006 * 109.46966 * 184.33571 * 7 6 5 10 10 C 1.53010 * 109.47314 * 64.33700 * 7 6 5 11 11 C 1.50699 * 109.46954 * 183.72070 * 10 7 6 12 12 H 1.07995 * 120.00375 * 5.11889 * 11 10 7 13 13 C 1.37876 * 119.99268 * 185.11301 * 11 10 7 14 14 N 1.31511 * 120.00530 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99725 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.47068 * 90.00017 * 15 13 11 17 17 H 1.48494 * 109.47327 * 210.00355 * 15 13 11 18 18 H 1.48507 * 109.47146 * 330.00281 * 15 13 11 19 19 C 1.46960 * 110.89925 * 300.71594 * 6 5 3 20 20 C 1.53046 * 109.36327 * 59.30684 * 19 6 5 21 21 N 1.46951 * 109.36653 * 301.59754 * 20 19 6 22 22 C 1.46906 * 111.00095 * 183.19222 * 21 20 19 23 23 C 1.50701 * 109.47143 * 52.03341 * 22 21 20 24 24 C 1.38233 * 119.99925 * 269.73212 * 23 22 21 25 25 C 1.38240 * 119.99936 * 179.79233 * 24 23 22 26 26 C 1.38239 * 119.99713 * 0.45524 * 25 24 23 27 27 C 1.38240 * 119.99899 * 359.77141 * 26 25 24 28 28 C 1.38228 * 120.00256 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.47638 * 183.65240 * 1 2 3 30 30 H 1.09003 * 109.47733 * 303.65762 * 1 2 3 31 31 H 1.09004 * 109.46480 * 63.65661 * 1 2 3 32 32 H 1.08995 * 109.47074 * 239.99518 * 2 1 3 33 33 H 1.09006 * 109.46519 * 119.99540 * 2 1 3 34 34 H 1.08998 * 109.49022 * 298.33849 * 5 3 2 35 35 H 1.09003 * 109.48774 * 58.39719 * 5 3 2 36 36 H 1.08997 * 109.47136 * 59.99952 * 9 7 6 37 37 H 1.09007 * 109.47148 * 180.02562 * 9 7 6 38 38 H 1.09004 * 109.46942 * 299.99911 * 9 7 6 39 39 H 1.08991 * 109.46640 * 303.72435 * 10 7 6 40 40 H 1.09007 * 109.46623 * 63.72178 * 10 7 6 41 41 H 0.97001 * 119.99800 * 179.97438 * 14 13 11 42 42 H 1.09005 * 109.48424 * 299.33803 * 19 6 5 43 43 H 1.08997 * 109.50412 * 179.28767 * 19 6 5 44 44 H 1.09000 * 109.48629 * 181.63289 * 20 19 6 45 45 H 1.08999 * 109.50850 * 61.57854 * 20 19 6 46 46 H 1.08994 * 109.47137 * 172.03790 * 22 21 20 47 47 H 1.08998 * 109.46539 * 292.03701 * 22 21 20 48 48 H 1.07994 * 120.00217 * 359.97438 * 24 23 22 49 49 H 1.07992 * 119.99991 * 180.25111 * 25 24 23 50 50 H 1.07995 * 119.99811 * 179.79196 * 26 25 24 51 51 H 1.07995 * 119.99528 * 179.97438 * 27 26 25 52 52 H 1.07995 * 120.00593 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5941 1.9858 -0.8330 5 6 1.6541 2.1206 1.3168 6 7 2.1794 3.4930 1.3304 7 6 1.7654 4.2030 2.5478 8 1 0.6789 4.1780 2.6313 9 6 2.2381 5.6564 2.4763 10 6 2.3866 3.5243 3.7704 11 6 1.8894 4.1958 5.0245 12 1 1.1372 4.9682 4.9616 13 6 2.3947 3.8239 6.2522 14 7 3.3109 2.8835 6.3288 15 14 1.7780 4.6557 7.8069 16 1 0.6105 3.9077 8.3388 17 1 2.8607 4.6711 8.8230 18 1 1.3722 6.0498 7.4948 19 6 3.6423 3.4957 1.1907 20 6 4.0277 2.8179 -0.1262 21 7 3.5029 1.4453 -0.1396 22 6 3.9170 0.7352 -1.3571 23 6 5.4110 0.8464 -1.5200 24 6 5.9518 1.8991 -2.2344 25 6 7.3225 2.0035 -2.3802 26 6 8.1518 1.0501 -1.8196 27 6 7.6107 -0.0051 -1.1092 28 6 6.2403 -0.1072 -0.9598 29 1 -0.3634 -1.0255 0.0655 30 1 -0.3635 0.5696 0.8554 31 1 -0.3632 0.4561 -0.9210 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 0.5682 2.1455 1.4084 35 1 2.0770 1.5613 2.1514 36 1 1.7956 6.1400 1.6054 37 1 1.9312 6.1833 3.3799 38 1 3.3246 5.6814 2.3928 39 1 2.1031 2.4720 3.7848 40 1 3.4723 3.6075 3.7196 41 1 3.6666 2.6222 7.1925 42 1 4.0881 2.9521 2.0237 43 1 4.0060 4.5233 1.1909 44 1 5.1135 2.7929 -0.2182 45 1 3.6048 3.3770 -0.9608 46 1 3.6373 -0.3153 -1.2778 47 1 3.4231 1.1784 -2.2218 48 1 5.3037 2.6414 -2.6761 49 1 7.7453 2.8281 -2.9349 50 1 9.2225 1.1299 -1.9364 51 1 8.2586 -0.7501 -0.6716 52 1 5.8174 -0.9318 -0.4052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411522359.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:10 Heat of formation + Delta-G solvation = 9.701571 kcal Electronic energy + Delta-G solvation = -27600.317011 eV Core-core repulsion = 24177.369740 eV Total energy + Delta-G solvation = -3422.947272 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.15738 -39.88831 -37.86394 -35.03835 -34.99079 -33.14568 -31.76711 -31.53732 -30.42862 -29.05499 -27.67297 -25.69086 -25.25637 -24.68807 -23.46944 -22.70991 -21.92332 -20.85164 -20.05354 -18.58741 -17.66461 -17.29630 -16.65441 -16.52492 -16.28595 -16.12546 -15.62498 -15.48087 -15.17061 -15.07424 -14.78113 -14.50154 -14.25517 -14.11516 -14.05895 -13.83484 -13.46566 -13.25613 -13.14653 -12.95541 -12.82341 -12.67935 -12.55889 -12.51076 -12.28542 -12.18841 -11.93286 -11.84465 -11.77835 -11.62003 -11.56976 -11.36412 -11.22845 -11.02774 -10.54324 -9.76160 -9.67844 -9.23502 -9.05643 -8.18752 -6.29813 0.44667 0.54705 1.38223 1.39208 1.50289 2.39688 2.73129 3.05778 3.13786 3.15640 3.78630 3.83186 3.96101 4.00546 4.13232 4.19118 4.25780 4.30803 4.33599 4.37442 4.42929 4.46686 4.50256 4.58944 4.61789 4.65040 4.69349 4.73943 4.76887 4.82863 4.89942 4.99227 5.00317 5.07447 5.11429 5.13421 5.17222 5.20410 5.25791 5.36066 5.40965 5.43234 5.50487 5.58541 5.61112 5.66086 5.73500 5.75401 6.01859 6.09530 6.13747 6.19453 6.29639 6.39683 6.87093 7.38724 8.92347 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.003499 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.792133 B = 7999.333664 C = 8857.684438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C 0.100 3.900 4 H 0.053 0.947 5 C 0.064 3.936 6 N -0.527 5.527 7 C 0.087 3.913 8 H 0.065 0.935 9 C -0.119 4.119 10 C 0.014 3.986 11 C -0.529 4.529 12 H 0.063 0.937 13 C 0.000 4.000 14 N -0.935 5.935 15 Si 0.961 3.039 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.260 1.260 19 C 0.056 3.944 20 C 0.073 3.927 21 N -0.545 5.545 22 C 0.097 3.903 23 C -0.091 4.091 24 C -0.121 4.121 25 C -0.128 4.128 26 C -0.128 4.128 27 C -0.132 4.132 28 C -0.116 4.116 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.011 0.989 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.042 0.958 39 H -0.020 1.020 40 H -0.010 1.010 41 H 0.261 0.739 42 H 0.009 0.991 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.046 0.954 46 H 0.093 0.907 47 H 0.050 0.950 48 H 0.127 0.873 49 H 0.140 0.860 50 H 0.140 0.860 51 H 0.135 0.865 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.285 -4.594 -20.692 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.008 4.008 4 H 0.071 0.929 5 C -0.065 4.065 6 N -0.250 5.250 7 C -0.021 4.021 8 H 0.084 0.916 9 C -0.177 4.177 10 C -0.024 4.024 11 C -0.568 4.568 12 H 0.082 0.918 13 C -0.197 4.197 14 N -0.575 5.575 15 Si 0.786 3.214 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.184 1.184 19 C -0.073 4.073 20 C -0.055 4.055 21 N -0.270 5.270 22 C -0.029 4.029 23 C -0.092 4.092 24 C -0.140 4.140 25 C -0.146 4.146 26 C -0.146 4.146 27 C -0.150 4.150 28 C -0.134 4.134 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.030 0.970 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.061 0.939 39 H -0.001 1.001 40 H 0.008 0.992 41 H 0.070 0.930 42 H 0.027 0.973 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.064 0.936 46 H 0.111 0.889 47 H 0.068 0.932 48 H 0.145 0.855 49 H 0.158 0.842 50 H 0.158 0.842 51 H 0.153 0.847 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.366 -4.664 -20.588 21.376 hybrid contribution 0.022 0.101 1.588 1.592 sum 3.388 -4.563 -19.000 19.831 Atomic orbital electron populations 1.21773 0.94441 1.02375 1.02031 1.21586 0.96632 0.94386 1.02554 1.21641 0.86648 0.96555 0.95945 0.92933 1.22176 0.99444 0.88520 0.96351 1.62638 1.10262 1.15081 1.37002 1.21650 0.98636 0.94559 0.87210 0.91633 1.21620 1.00217 0.94602 1.01238 1.19468 0.94779 0.94142 0.93996 1.21575 1.22464 1.20520 0.92225 0.91837 1.25950 0.95157 0.95753 1.02858 1.70127 1.30050 1.31738 1.25610 0.85509 0.77885 0.79381 0.78669 1.19956 1.21036 1.18419 1.22137 0.88565 1.00054 0.96536 1.22078 0.99875 0.87812 0.95708 1.62166 1.10850 1.16067 1.37909 1.21110 0.91112 1.00160 0.90541 1.19870 0.95308 0.95752 0.98256 1.21256 0.95925 0.97600 0.99213 1.21413 0.93364 0.99637 1.00166 1.21463 1.00896 0.94545 0.97719 1.21421 0.95098 0.99167 0.99283 1.21207 0.93983 0.99324 0.98911 0.91394 0.93571 0.91651 0.89876 0.92898 0.90365 0.97028 0.91458 0.92757 0.93877 1.00147 0.99171 0.93040 0.97284 0.90185 0.90099 0.93559 0.88916 0.93183 0.85487 0.84172 0.84210 0.84743 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 9.76 71.98 0.70 -2.35 16 2 C -0.11 -2.65 5.24 30.59 0.16 -2.49 16 3 C 0.10 2.80 2.02 44.92 0.09 2.89 16 4 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 5 C 0.06 2.27 4.26 86.31 0.37 2.64 16 6 N -0.53 -19.70 4.70 -870.45 -4.09 -23.79 16 7 C 0.09 3.74 2.40 44.92 0.11 3.85 16 8 H 0.07 2.82 8.12 -2.39 -0.02 2.80 16 9 C -0.12 -4.58 8.78 71.98 0.63 -3.94 16 10 C 0.01 0.78 3.74 29.85 0.11 0.89 16 11 C -0.53 -30.25 8.29 25.60 0.21 -30.04 16 12 H 0.06 3.46 7.17 -2.91 -0.02 3.44 16 13 C 0.00 0.02 5.46 84.65 0.46 0.48 16 14 N -0.93 -58.39 13.29 21.45 0.28 -58.11 16 15 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 16 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 18 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 19 C 0.06 2.05 4.82 86.31 0.42 2.46 16 20 C 0.07 2.16 4.85 86.31 0.42 2.58 16 21 N -0.54 -15.45 4.63 -875.05 -4.05 -19.50 16 22 C 0.10 2.15 4.70 85.56 0.40 2.56 16 23 C -0.09 -2.06 4.38 -19.87 -0.09 -2.15 16 24 C -0.12 -2.47 7.81 22.27 0.17 -2.29 16 25 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 26 C -0.13 -2.35 10.05 22.27 0.22 -2.12 16 27 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 28 C -0.12 -2.63 9.70 22.27 0.22 -2.41 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.09 6.47 -2.39 -0.02 1.07 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.60 6.13 -2.39 -0.01 1.58 16 33 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.08 2.68 6.58 -2.39 -0.02 2.67 16 35 H 0.01 0.50 6.50 -2.39 -0.02 0.49 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.05 2.19 6.97 -2.38 -0.02 2.18 16 38 H 0.04 1.65 6.35 -2.38 -0.02 1.64 16 39 H -0.02 -1.18 6.40 -2.39 -0.02 -1.19 16 40 H -0.01 -0.60 6.68 -2.38 -0.02 -0.62 16 41 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 42 H 0.01 0.40 6.56 -2.38 -0.02 0.39 16 43 H 0.08 2.84 6.16 -2.39 -0.01 2.82 16 44 H 0.08 2.35 5.81 -2.39 -0.01 2.34 16 45 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.09 1.88 6.31 -2.39 -0.02 1.87 16 47 H 0.05 1.00 8.08 -2.39 -0.02 0.98 16 48 H 0.13 2.27 8.05 -2.91 -0.02 2.25 16 49 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 50 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 51 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 52 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -67.09 387.54 0.10 -66.99 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.87 Total: 21.48 kcal Atomic # 6 Polarization: -39.07 SS G_CDS: 5.06 Total: -34.01 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -7.86 Total: -101.40 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -67.09 0.10 -66.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411522359.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.688 kcal (2) G-P(sol) polarization free energy of solvation -67.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds