Wall clock time and date at job start Tue Mar 31 2020 11:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46569 * 2 1 4 4 H 1.09000 * 109.48687 * 304.79899 * 3 2 1 5 5 C 1.53052 * 109.49095 * 64.84790 * 3 2 1 6 6 N 1.46949 * 109.36539 * 178.36804 * 5 3 2 7 7 C 1.46897 * 111.00340 * 176.81432 * 6 5 3 8 8 H 1.09007 * 109.47026 * 299.99831 * 7 6 5 9 9 C 1.53007 * 109.47422 * 59.99414 * 7 6 5 10 10 C 1.52990 * 109.47453 * 179.97438 * 7 6 5 11 11 C 1.50700 * 109.47348 * 64.99875 * 10 7 6 12 12 H 1.08005 * 119.99806 * 0.02562 * 11 10 7 13 13 C 1.37877 * 120.00688 * 179.97438 * 11 10 7 14 14 N 1.31516 * 119.99667 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00233 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47021 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.47315 * 299.99922 * 15 13 11 18 18 H 1.48498 * 109.47229 * 60.00142 * 15 13 11 19 19 C 1.46963 * 110.87973 * 300.67563 * 6 5 3 20 20 C 1.53052 * 109.36129 * 59.32194 * 19 6 5 21 21 N 1.46958 * 109.48421 * 184.73664 * 3 2 1 22 22 C 1.46900 * 111.00124 * 56.84674 * 21 3 2 23 23 C 1.50702 * 109.47399 * 175.52943 * 22 21 3 24 24 C 1.38232 * 120.00141 * 269.73070 * 23 22 21 25 25 C 1.38236 * 119.99693 * 179.78822 * 24 23 22 26 26 C 1.38231 * 120.00100 * 0.46056 * 25 24 23 27 27 C 1.38232 * 119.99870 * 359.76257 * 26 25 24 28 28 C 1.38233 * 120.00262 * 0.03204 * 27 26 25 29 29 H 1.09002 * 109.47632 * 304.12398 * 1 2 3 30 30 H 1.08999 * 109.47284 * 64.12669 * 1 2 3 31 31 H 1.09001 * 109.46718 * 184.12332 * 1 2 3 32 32 H 1.08994 * 109.47367 * 240.00330 * 2 1 3 33 33 H 1.08996 * 109.47146 * 119.99219 * 2 1 3 34 34 H 1.09001 * 109.48819 * 58.39608 * 5 3 2 35 35 H 1.09004 * 109.50504 * 298.34726 * 5 3 2 36 36 H 1.08992 * 109.47305 * 180.02562 * 9 7 6 37 37 H 1.09007 * 109.46821 * 300.00769 * 9 7 6 38 38 H 1.09007 * 109.46679 * 60.00204 * 9 7 6 39 39 H 1.08996 * 109.47482 * 304.99712 * 10 7 6 40 40 H 1.09006 * 109.47160 * 184.99509 * 10 7 6 41 41 H 0.96999 * 119.99823 * 359.97438 * 14 13 11 42 42 H 1.09002 * 109.49135 * 179.28713 * 19 6 5 43 43 H 1.08998 * 109.49247 * 299.35660 * 19 6 5 44 44 H 1.09002 * 109.48842 * 181.62838 * 20 19 6 45 45 H 1.09001 * 109.49091 * 61.56372 * 20 19 6 46 46 H 1.08997 * 109.47084 * 295.53469 * 22 21 3 47 47 H 1.09004 * 109.47161 * 55.53240 * 22 21 3 48 48 H 1.08001 * 120.00266 * 359.97438 * 24 23 22 49 49 H 1.07997 * 119.99509 * 180.25049 * 25 24 23 50 50 H 1.08001 * 119.99710 * 179.79597 * 26 25 24 51 51 H 1.08001 * 119.99729 * 180.02562 * 27 26 25 52 52 H 1.07997 * 119.99775 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6081 1.9809 -0.8438 5 6 1.6319 2.1285 1.3060 6 7 2.1563 3.5011 1.3200 7 6 1.7215 4.2186 2.5259 8 1 0.6325 4.2602 2.5511 9 6 2.2326 3.4854 3.7678 10 6 2.2864 5.6402 2.5051 11 6 1.6879 6.4018 1.3506 12 1 0.9754 5.9200 0.6973 13 6 2.0489 7.7138 1.1288 14 7 2.9160 8.3007 1.9247 15 14 1.3075 8.6574 -0.3026 16 1 1.8557 10.0375 -0.3228 17 1 1.6462 7.9721 -1.5758 18 1 -0.1684 8.7127 -0.1477 19 6 3.6215 3.5033 1.2057 20 6 4.0295 2.8174 -0.1003 21 7 3.5050 1.4447 -0.1144 22 6 3.9399 0.7273 -1.3203 23 6 5.4357 0.8440 -1.4623 24 6 5.9824 1.8935 -2.1766 25 6 7.3546 2.0029 -2.3031 26 6 8.1797 1.0575 -1.7233 27 6 7.6328 0.0054 -1.0128 28 6 6.2607 -0.1017 -0.8827 29 1 -0.3634 0.5765 0.8507 30 1 -0.3634 0.4484 -0.9246 31 1 -0.3633 -1.0250 0.0739 32 1 1.8933 -0.5137 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 2.0407 1.5743 2.1509 35 1 0.5446 2.1538 1.3796 36 1 1.9096 4.0174 4.6625 37 1 1.8305 2.4723 3.7828 38 1 3.3216 3.4437 3.7426 39 1 3.3695 5.5992 2.3907 40 1 2.0385 6.1434 3.4397 41 1 3.3013 7.8105 2.6678 42 1 3.9848 4.5309 1.2056 43 1 4.0529 2.9647 2.0494 44 1 5.1167 2.7921 -0.1735 45 1 3.6206 3.3715 -0.9453 46 1 3.6637 -0.3238 -1.2372 47 1 3.4569 1.1618 -2.1956 48 1 5.3376 2.6297 -2.6334 49 1 7.7819 2.8251 -2.8578 50 1 9.2517 1.1411 -1.8249 51 1 8.2774 -0.7331 -0.5594 52 1 5.8335 -0.9239 -0.3280 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411522362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:19 Heat of formation + Delta-G solvation = 27.428765 kcal Electronic energy + Delta-G solvation = -27838.155022 eV Core-core repulsion = 24415.976459 eV Total energy + Delta-G solvation = -3422.178563 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.04689 -38.87506 -36.55523 -34.05198 -33.14352 -31.79052 -30.95091 -30.11630 -29.21184 -26.96798 -26.60486 -24.41898 -23.87279 -22.77561 -22.55986 -21.55682 -21.01285 -19.64637 -18.66651 -16.85435 -16.58731 -16.17371 -15.57663 -15.30330 -15.03558 -14.58372 -14.45999 -14.04268 -13.72649 -13.65896 -13.51971 -13.40443 -13.30202 -13.01371 -12.93940 -12.43191 -12.33882 -12.19506 -11.93726 -11.52099 -11.44114 -11.32807 -11.09821 -11.05427 -10.99179 -10.79352 -10.68647 -10.59773 -10.49080 -10.24372 -10.02044 -9.88646 -9.34526 -8.94613 -8.82498 -8.45016 -8.20785 -8.13715 -7.46182 -6.21248 -3.86890 1.26906 1.35758 3.50919 3.53062 3.63541 3.71554 4.15101 4.48937 4.65387 4.68628 4.78865 4.91704 4.94413 5.05043 5.07298 5.21636 5.28841 5.43592 5.48051 5.48601 5.52368 5.54852 5.59758 5.62998 5.71051 5.79420 5.81711 5.85485 5.90447 5.95046 5.95403 5.99240 6.00402 6.05325 6.09389 6.24405 6.34701 6.38026 6.40032 6.45443 6.47637 6.57636 6.61646 6.66928 6.86473 6.93583 7.16043 7.25422 7.32007 7.49473 7.86511 7.94402 8.39378 8.67241 9.04211 9.81966 11.18806 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010366 B = 0.004268 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.531040 B = 6558.653516 C = 7891.388190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C 0.089 3.911 4 H 0.049 0.951 5 C 0.060 3.940 6 N -0.512 5.512 7 C 0.095 3.905 8 H 0.070 0.930 9 C -0.185 4.185 10 C 0.014 3.986 11 C -0.572 4.572 12 H 0.053 0.947 13 C 0.009 3.991 14 N -0.922 5.922 15 Si 1.066 2.934 16 H -0.286 1.286 17 H -0.290 1.290 18 H -0.290 1.290 19 C 0.059 3.941 20 C 0.058 3.942 21 N -0.529 5.529 22 C 0.090 3.910 23 C -0.076 4.076 24 C -0.111 4.111 25 C -0.120 4.120 26 C -0.123 4.123 27 C -0.124 4.124 28 C -0.101 4.101 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.044 0.956 38 H 0.050 0.950 39 H 0.011 0.989 40 H 0.008 0.992 41 H 0.265 0.735 42 H 0.093 0.907 43 H 0.030 0.970 44 H 0.077 0.923 45 H 0.041 0.959 46 H 0.083 0.917 47 H 0.040 0.960 48 H 0.120 0.880 49 H 0.121 0.879 50 H 0.118 0.882 51 H 0.119 0.881 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.402 -19.507 -6.157 20.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.020 4.020 4 H 0.067 0.933 5 C -0.069 4.069 6 N -0.235 5.235 7 C -0.013 4.013 8 H 0.088 0.912 9 C -0.243 4.243 10 C -0.023 4.023 11 C -0.610 4.610 12 H 0.072 0.928 13 C -0.193 4.193 14 N -0.560 5.560 15 Si 0.896 3.104 16 H -0.211 1.211 17 H -0.217 1.217 18 H -0.217 1.217 19 C -0.069 4.069 20 C -0.070 4.070 21 N -0.253 5.253 22 C -0.037 4.037 23 C -0.077 4.077 24 C -0.130 4.130 25 C -0.138 4.138 26 C -0.142 4.142 27 C -0.142 4.142 28 C -0.120 4.120 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.029 0.971 40 H 0.026 0.974 41 H 0.076 0.924 42 H 0.111 0.889 43 H 0.048 0.952 44 H 0.096 0.904 45 H 0.060 0.940 46 H 0.101 0.899 47 H 0.058 0.942 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.136 0.864 51 H 0.137 0.863 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.374 -18.011 -6.928 19.787 hybrid contribution 0.062 -1.464 0.826 1.682 sum 4.436 -19.474 -6.102 20.885 Atomic orbital electron populations 1.21802 0.95540 1.01385 1.02279 1.21605 0.95710 0.95989 1.02222 1.21717 0.86746 0.95236 0.98281 0.93301 1.22204 0.99437 0.89829 0.95402 1.62259 1.09509 1.12404 1.39338 1.21715 0.99299 0.95380 0.84908 0.91213 1.22530 1.01320 1.00001 1.00498 1.19377 0.95891 0.89772 0.97236 1.21951 1.27559 0.98265 1.13267 0.92833 1.25745 0.96124 0.95720 1.01704 1.70794 1.28311 1.40001 1.16885 0.83573 0.75608 0.75972 0.75261 1.21127 1.21688 1.21695 1.22160 0.88640 1.00965 0.95127 1.22272 0.99508 0.86961 0.98253 1.62303 1.09986 1.16382 1.36678 1.21107 0.90798 0.99809 0.91954 1.19781 0.95293 0.95147 0.97441 1.21150 0.95303 0.97562 0.98971 1.21132 0.93575 0.99040 1.00083 1.21130 0.99632 0.95052 0.98352 1.21123 0.95116 0.98470 0.99485 1.20994 0.93229 0.98967 0.98761 0.92177 0.92763 0.92867 0.91964 0.91443 0.94640 0.90899 0.92744 0.93725 0.93051 0.97075 0.97405 0.92446 0.88857 0.95204 0.90438 0.94047 0.89868 0.94187 0.86176 0.86117 0.86356 0.86312 0.86131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.76 37.16 0.36 -1.18 16 2 C -0.12 -1.29 5.22 -26.73 -0.14 -1.43 16 3 C 0.09 1.24 2.03 -67.65 -0.14 1.11 16 4 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 5 C 0.06 0.95 4.12 -3.77 -0.02 0.94 16 6 N -0.51 -9.93 4.45 -226.49 -1.01 -10.94 16 7 C 0.09 1.97 2.37 -67.72 -0.16 1.81 16 8 H 0.07 1.50 8.14 -51.93 -0.42 1.07 16 9 C -0.18 -3.28 8.50 37.16 0.32 -2.96 16 10 C 0.01 0.36 3.45 -27.89 -0.10 0.26 16 11 C -0.57 -16.16 8.84 -34.44 -0.30 -16.46 16 12 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 13 C 0.01 0.27 5.46 -17.82 -0.10 0.17 16 14 N -0.92 -28.46 13.65 55.43 0.76 -27.70 16 15 Si 1.07 25.97 29.90 -169.99 -5.08 20.89 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 C 0.06 1.12 4.84 -3.76 -0.02 1.10 16 20 C 0.06 0.95 4.84 -3.76 -0.02 0.93 16 21 N -0.53 -7.48 4.63 -227.91 -1.06 -8.54 16 22 C 0.09 1.08 4.69 -4.98 -0.02 1.06 16 23 C -0.08 -0.91 4.37 -104.62 -0.46 -1.37 16 24 C -0.11 -1.34 7.81 -39.58 -0.31 -1.65 16 25 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 26 C -0.12 -1.27 10.05 -39.59 -0.40 -1.66 16 27 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 28 C -0.10 -1.12 9.70 -39.58 -0.38 -1.51 16 29 H 0.06 0.64 6.41 -51.93 -0.33 0.31 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.63 6.19 -51.93 -0.32 0.30 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.04 0.57 6.48 -51.93 -0.34 0.23 16 35 H 0.07 1.13 6.56 -51.93 -0.34 0.79 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.04 0.71 6.48 -51.93 -0.34 0.37 16 38 H 0.05 0.92 6.56 -51.93 -0.34 0.58 16 39 H 0.01 0.30 5.87 -51.93 -0.30 -0.01 16 40 H 0.01 0.21 8.01 -51.93 -0.42 -0.21 16 41 H 0.27 8.16 7.22 -40.82 -0.29 7.87 16 42 H 0.09 2.05 5.95 -51.93 -0.31 1.75 16 43 H 0.03 0.56 6.57 -51.93 -0.34 0.22 16 44 H 0.08 1.24 5.81 -51.93 -0.30 0.94 16 45 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.88 6.35 -51.93 -0.33 0.55 16 47 H 0.04 0.49 8.08 -51.93 -0.42 0.07 16 48 H 0.12 1.42 8.05 -52.49 -0.42 1.00 16 49 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 50 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 51 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 52 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 387.65 15.07 5.84 5.84 Total: -1.00 -30.62 387.65 -12.22 -42.84 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -9.00 Total: 1.83 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: -2.68 Total: -24.22 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -1.31 Total: -47.18 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -5.08 Total: 20.89 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.62 -12.22 -42.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411522362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.269 kcal (2) G-P(sol) polarization free energy of solvation -30.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds