Wall clock time and date at job start Tue Mar 31 2020 11:13:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53009 * 109.46569 * 2 1
4 4 H 1.09000 * 109.48687 * 304.79899 * 3 2 1
5 5 C 1.53052 * 109.49095 * 64.84790 * 3 2 1
6 6 N 1.46949 * 109.36539 * 178.36804 * 5 3 2
7 7 C 1.46897 * 111.00340 * 176.81432 * 6 5 3
8 8 H 1.09007 * 109.47026 * 299.99831 * 7 6 5
9 9 C 1.53007 * 109.47422 * 59.99414 * 7 6 5
10 10 C 1.52990 * 109.47453 * 179.97438 * 7 6 5
11 11 C 1.50700 * 109.47348 * 64.99875 * 10 7 6
12 12 H 1.08005 * 119.99806 * 0.02562 * 11 10 7
13 13 C 1.37877 * 120.00688 * 179.97438 * 11 10 7
14 14 N 1.31516 * 119.99667 * 0.02562 * 13 11 10
15 15 Si 1.86791 * 120.00233 * 179.97438 * 13 11 10
16 16 H 1.48508 * 109.47021 * 180.02562 * 15 13 11
17 17 H 1.48500 * 109.47315 * 299.99922 * 15 13 11
18 18 H 1.48498 * 109.47229 * 60.00142 * 15 13 11
19 19 C 1.46963 * 110.87973 * 300.67563 * 6 5 3
20 20 C 1.53052 * 109.36129 * 59.32194 * 19 6 5
21 21 N 1.46958 * 109.48421 * 184.73664 * 3 2 1
22 22 C 1.46900 * 111.00124 * 56.84674 * 21 3 2
23 23 C 1.50702 * 109.47399 * 175.52943 * 22 21 3
24 24 C 1.38232 * 120.00141 * 269.73070 * 23 22 21
25 25 C 1.38236 * 119.99693 * 179.78822 * 24 23 22
26 26 C 1.38231 * 120.00100 * 0.46056 * 25 24 23
27 27 C 1.38232 * 119.99870 * 359.76257 * 26 25 24
28 28 C 1.38233 * 120.00262 * 0.03204 * 27 26 25
29 29 H 1.09002 * 109.47632 * 304.12398 * 1 2 3
30 30 H 1.08999 * 109.47284 * 64.12669 * 1 2 3
31 31 H 1.09001 * 109.46718 * 184.12332 * 1 2 3
32 32 H 1.08994 * 109.47367 * 240.00330 * 2 1 3
33 33 H 1.08996 * 109.47146 * 119.99219 * 2 1 3
34 34 H 1.09001 * 109.48819 * 58.39608 * 5 3 2
35 35 H 1.09004 * 109.50504 * 298.34726 * 5 3 2
36 36 H 1.08992 * 109.47305 * 180.02562 * 9 7 6
37 37 H 1.09007 * 109.46821 * 300.00769 * 9 7 6
38 38 H 1.09007 * 109.46679 * 60.00204 * 9 7 6
39 39 H 1.08996 * 109.47482 * 304.99712 * 10 7 6
40 40 H 1.09006 * 109.47160 * 184.99509 * 10 7 6
41 41 H 0.96999 * 119.99823 * 359.97438 * 14 13 11
42 42 H 1.09002 * 109.49135 * 179.28713 * 19 6 5
43 43 H 1.08998 * 109.49247 * 299.35660 * 19 6 5
44 44 H 1.09002 * 109.48842 * 181.62838 * 20 19 6
45 45 H 1.09001 * 109.49091 * 61.56372 * 20 19 6
46 46 H 1.08997 * 109.47084 * 295.53469 * 22 21 3
47 47 H 1.09004 * 109.47161 * 55.53240 * 22 21 3
48 48 H 1.08001 * 120.00266 * 359.97438 * 24 23 22
49 49 H 1.07997 * 119.99509 * 180.25049 * 25 24 23
50 50 H 1.08001 * 119.99710 * 179.79597 * 26 25 24
51 51 H 1.08001 * 119.99729 * 180.02562 * 27 26 25
52 52 H 1.07997 * 119.99775 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.6081 1.9809 -0.8438
5 6 1.6319 2.1285 1.3060
6 7 2.1563 3.5011 1.3200
7 6 1.7215 4.2186 2.5259
8 1 0.6325 4.2602 2.5511
9 6 2.2326 3.4854 3.7678
10 6 2.2864 5.6402 2.5051
11 6 1.6879 6.4018 1.3506
12 1 0.9754 5.9200 0.6973
13 6 2.0489 7.7138 1.1288
14 7 2.9160 8.3007 1.9247
15 14 1.3075 8.6574 -0.3026
16 1 1.8557 10.0375 -0.3228
17 1 1.6462 7.9721 -1.5758
18 1 -0.1684 8.7127 -0.1477
19 6 3.6215 3.5033 1.2057
20 6 4.0295 2.8174 -0.1003
21 7 3.5050 1.4447 -0.1144
22 6 3.9399 0.7273 -1.3203
23 6 5.4357 0.8440 -1.4623
24 6 5.9824 1.8935 -2.1766
25 6 7.3546 2.0029 -2.3031
26 6 8.1797 1.0575 -1.7233
27 6 7.6328 0.0054 -1.0128
28 6 6.2607 -0.1017 -0.8827
29 1 -0.3634 0.5765 0.8507
30 1 -0.3634 0.4484 -0.9246
31 1 -0.3633 -1.0250 0.0739
32 1 1.8933 -0.5137 -0.8899
33 1 1.8933 -0.5137 0.8900
34 1 2.0407 1.5743 2.1509
35 1 0.5446 2.1538 1.3796
36 1 1.9096 4.0174 4.6625
37 1 1.8305 2.4723 3.7828
38 1 3.3216 3.4437 3.7426
39 1 3.3695 5.5992 2.3907
40 1 2.0385 6.1434 3.4397
41 1 3.3013 7.8105 2.6678
42 1 3.9848 4.5309 1.2056
43 1 4.0529 2.9647 2.0494
44 1 5.1167 2.7921 -0.1735
45 1 3.6206 3.3715 -0.9453
46 1 3.6637 -0.3238 -1.2372
47 1 3.4569 1.1618 -2.1956
48 1 5.3376 2.6297 -2.6334
49 1 7.7819 2.8251 -2.8578
50 1 9.2517 1.1411 -1.8249
51 1 8.2774 -0.7331 -0.5594
52 1 5.8335 -0.9239 -0.3280
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000411522362.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:13:18
Heat of formation + Delta-G solvation = 10.072691 kcal
Electronic energy + Delta-G solvation = -27838.907638 eV
Core-core repulsion = 24415.976459 eV
Total energy + Delta-G solvation = -3422.931179 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.20735 -39.93953 -37.94676 -35.25927 -34.97998 -33.13158 -31.78297 -31.43576
-30.45308 -28.83279 -27.76422 -25.63087 -25.29095 -24.54446 -23.49991 -22.80673
-21.94225 -20.93482 -20.19580 -18.78072 -17.68185 -17.49367 -16.58240 -16.36384
-16.21217 -15.92842 -15.64351 -15.52783 -15.27908 -15.18494 -14.90111 -14.62744
-14.41576 -14.21574 -14.11271 -13.55077 -13.38015 -13.32483 -13.24642 -13.08316
-12.94711 -12.64041 -12.57350 -12.51145 -12.25394 -12.11070 -11.94968 -11.92986
-11.85460 -11.71907 -11.56783 -11.26797 -11.03509 -10.61443 -10.46564 -9.78840
-9.71757 -9.30222 -8.98861 -8.57098 -6.22801 0.42033 0.52177 1.51540
1.60085 1.79054 2.60158 2.69621 3.01645 3.11460 3.27858 3.75874
3.80324 3.92496 3.96655 4.09903 4.16161 4.19599 4.23353 4.28296
4.29699 4.36218 4.39966 4.42754 4.46636 4.54779 4.57286 4.62665
4.66546 4.73163 4.79976 4.82016 4.88443 4.95621 4.98371 4.99592
5.05373 5.11210 5.15664 5.17711 5.19050 5.23494 5.34107 5.44098
5.51013 5.57757 5.63819 5.70744 5.99740 6.03166 6.11434 6.15287
6.31746 6.33808 6.41621 6.72494 7.54270 8.83473
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.010366 B = 0.004268 C = 0.003547
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2700.531040 B = 6558.653516 C = 7891.388190
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.107 4.107
3 C 0.091 3.909
4 H 0.030 0.970
5 C 0.063 3.937
6 N -0.530 5.530
7 C 0.101 3.899
8 H 0.063 0.937
9 C -0.172 4.172
10 C 0.019 3.981
11 C -0.576 4.576
12 H 0.047 0.953
13 C -0.043 4.043
14 N -0.947 5.947
15 Si 1.112 2.888
16 H -0.286 1.286
17 H -0.276 1.276
18 H -0.271 1.271
19 C 0.068 3.932
20 C 0.073 3.927
21 N -0.525 5.525
22 C 0.094 3.906
23 C -0.090 4.090
24 C -0.129 4.129
25 C -0.132 4.132
26 C -0.127 4.127
27 C -0.127 4.127
28 C -0.108 4.108
29 H 0.052 0.948
30 H 0.050 0.950
31 H 0.072 0.928
32 H 0.077 0.923
33 H 0.072 0.928
34 H 0.042 0.958
35 H 0.079 0.921
36 H 0.057 0.943
37 H 0.069 0.931
38 H 0.045 0.955
39 H -0.006 1.006
40 H -0.014 1.014
41 H 0.252 0.748
42 H 0.052 0.948
43 H 0.033 0.967
44 H 0.081 0.919
45 H 0.020 0.980
46 H 0.105 0.895
47 H 0.036 0.964
48 H 0.111 0.889
49 H 0.131 0.869
50 H 0.141 0.859
51 H 0.143 0.857
52 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.220 -22.166 -6.867 23.586
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.145 4.145
3 C -0.017 4.017
4 H 0.048 0.952
5 C -0.065 4.065
6 N -0.254 5.254
7 C -0.007 4.007
8 H 0.082 0.918
9 C -0.231 4.231
10 C -0.018 4.018
11 C -0.614 4.614
12 H 0.065 0.935
13 C -0.239 4.239
14 N -0.586 5.586
15 Si 0.935 3.065
16 H -0.212 1.212
17 H -0.202 1.202
18 H -0.196 1.196
19 C -0.060 4.060
20 C -0.056 4.056
21 N -0.250 5.250
22 C -0.032 4.032
23 C -0.090 4.090
24 C -0.148 4.148
25 C -0.150 4.150
26 C -0.145 4.145
27 C -0.145 4.145
28 C -0.126 4.126
29 H 0.071 0.929
30 H 0.069 0.931
31 H 0.091 0.909
32 H 0.095 0.905
33 H 0.091 0.909
34 H 0.060 0.940
35 H 0.097 0.903
36 H 0.076 0.924
37 H 0.088 0.912
38 H 0.064 0.936
39 H 0.013 0.987
40 H 0.004 0.996
41 H 0.061 0.939
42 H 0.071 0.929
43 H 0.051 0.949
44 H 0.099 0.901
45 H 0.039 0.961
46 H 0.123 0.877
47 H 0.054 0.946
48 H 0.129 0.871
49 H 0.149 0.851
50 H 0.158 0.842
51 H 0.161 0.839
52 H 0.153 0.847
Dipole moment (debyes) X Y Z Total
from point charges 4.184 -20.705 -7.634 22.460
hybrid contribution 0.163 -0.671 1.051 1.257
sum 4.346 -21.375 -6.583 22.784
Atomic orbital electron populations
1.21792 0.94736 1.02496 1.01797 1.21547 0.96286 0.93484 1.03185
1.21738 0.86591 0.97046 0.96369 0.95163 1.22273 0.99682 0.87771
0.96772 1.62177 1.09705 1.14792 1.38756 1.21464 0.98593 0.93395
0.87263 0.91835 1.22373 1.00916 1.00949 0.98854 1.19263 0.94870
0.92539 0.95140 1.22233 1.26951 0.98569 1.13661 0.93498 1.27185
0.95895 0.97312 1.03513 1.70925 1.29950 1.40189 1.17547 0.82979
0.75947 0.74721 0.72831 1.21175 1.20207 1.19614 1.21966 0.88532
0.98866 0.96667 1.22019 0.99602 0.88121 0.95827 1.62320 1.10036
1.14541 1.38087 1.21156 0.91013 1.00417 0.90649 1.19837 0.95325
0.95687 0.98202 1.21221 0.95907 0.97860 0.99785 1.21363 0.93381
0.99806 1.00430 1.21457 1.00791 0.94609 0.97654 1.21463 0.95196
0.98806 0.98985 1.21224 0.93689 0.99058 0.98629 0.92929 0.93068
0.90900 0.90476 0.90892 0.94022 0.90289 0.92396 0.91171 0.93556
0.98743 0.99555 0.93890 0.92948 0.94915 0.90106 0.96140 0.87702
0.94622 0.87088 0.85078 0.84158 0.83916 0.84737
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.64 9.76 71.98 0.70 -1.94 16
2 C -0.11 -2.06 5.22 30.60 0.16 -1.90 16
3 C 0.09 2.43 2.03 44.92 0.09 2.52 16
4 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16
5 C 0.06 1.93 4.12 86.31 0.36 2.28 16
6 N -0.53 -20.80 4.45 -870.47 -3.88 -24.68 16
7 C 0.10 4.27 2.37 44.92 0.11 4.37 16
8 H 0.06 2.74 8.14 -2.38 -0.02 2.72 16
9 C -0.17 -6.00 8.50 71.98 0.61 -5.38 16
10 C 0.02 1.00 3.45 29.84 0.10 1.10 16
11 C -0.58 -33.48 8.84 25.60 0.23 -33.25 16
12 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16
13 C -0.04 -2.57 5.46 84.65 0.46 -2.10 16
14 N -0.95 -60.24 13.65 21.45 0.29 -59.95 16
15 Si 1.11 52.69 29.90 68.60 2.05 54.74 16
16 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16
17 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16
18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16
19 C 0.07 2.65 4.84 86.31 0.42 3.07 16
20 C 0.07 2.42 4.84 86.31 0.42 2.84 16
21 N -0.53 -14.29 4.63 -874.98 -4.05 -18.34 16
22 C 0.09 2.12 4.69 85.56 0.40 2.52 16
23 C -0.09 -2.06 4.37 -19.87 -0.09 -2.14 16
24 C -0.13 -3.09 7.81 22.27 0.17 -2.91 16
25 C -0.13 -2.81 10.05 22.27 0.22 -2.58 16
26 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16
27 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16
28 C -0.11 -2.16 9.70 22.27 0.22 -1.94 16
29 H 0.05 1.00 6.41 -2.39 -0.02 0.99 16
30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16
31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16
32 H 0.08 1.28 6.19 -2.39 -0.01 1.27 16
33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16
34 H 0.04 1.24 6.48 -2.39 -0.02 1.23 16
35 H 0.08 2.33 6.56 -2.39 -0.02 2.31 16
36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16
37 H 0.07 2.09 6.48 -2.38 -0.02 2.07 16
38 H 0.05 1.65 6.56 -2.38 -0.02 1.63 16
39 H -0.01 -0.31 5.87 -2.39 -0.01 -0.32 16
40 H -0.01 -0.77 8.01 -2.38 -0.02 -0.79 16
41 H 0.25 16.23 7.22 -92.71 -0.67 15.56 16
42 H 0.05 2.45 5.95 -2.39 -0.01 2.44 16
43 H 0.03 1.24 6.57 -2.39 -0.02 1.23 16
44 H 0.08 2.63 5.81 -2.39 -0.01 2.62 16
45 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16
46 H 0.10 1.91 6.35 -2.39 -0.02 1.89 16
47 H 0.04 0.84 8.08 -2.39 -0.02 0.82 16
48 H 0.11 2.75 8.05 -2.91 -0.02 2.72 16
49 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16
50 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16
51 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16
52 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16
Total: -1.00 -67.72 387.65 0.42 -67.31
By element:
Atomic # 1 Polarization: 19.59 SS G_CDS: 0.97 Total: 20.56 kcal
Atomic # 6 Polarization: -44.67 SS G_CDS: 5.03 Total: -39.64 kcal
Atomic # 7 Polarization: -95.33 SS G_CDS: -7.63 Total: -102.97 kcal
Atomic # 14 Polarization: 52.69 SS G_CDS: 2.05 Total: 54.74 kcal
Total: -67.72 0.42 -67.31 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000411522362.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.378 kcal
(2) G-P(sol) polarization free energy of solvation -67.724 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.653 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.305 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.073 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds