Wall clock time and date at job start Tue Mar 31 2020 11:13:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.46569 * 2 1 4 4 H 1.09000 * 109.48687 * 304.79899 * 3 2 1 5 5 C 1.53052 * 109.49095 * 64.84790 * 3 2 1 6 6 N 1.46949 * 109.36539 * 178.36804 * 5 3 2 7 7 C 1.46897 * 111.00340 * 176.81432 * 6 5 3 8 8 H 1.09007 * 109.47026 * 299.99831 * 7 6 5 9 9 C 1.53007 * 109.47422 * 59.99414 * 7 6 5 10 10 C 1.52990 * 109.47453 * 179.97438 * 7 6 5 11 11 C 1.50700 * 109.47348 * 64.99875 * 10 7 6 12 12 H 1.08005 * 119.99806 * 0.02562 * 11 10 7 13 13 C 1.37877 * 120.00688 * 179.97438 * 11 10 7 14 14 N 1.31516 * 119.99667 * 0.02562 * 13 11 10 15 15 Si 1.86791 * 120.00233 * 179.97438 * 13 11 10 16 16 H 1.48508 * 109.47021 * 180.02562 * 15 13 11 17 17 H 1.48500 * 109.47315 * 299.99922 * 15 13 11 18 18 H 1.48498 * 109.47229 * 60.00142 * 15 13 11 19 19 C 1.46963 * 110.87973 * 300.67563 * 6 5 3 20 20 C 1.53052 * 109.36129 * 59.32194 * 19 6 5 21 21 N 1.46958 * 109.48421 * 184.73664 * 3 2 1 22 22 C 1.46900 * 111.00124 * 56.84674 * 21 3 2 23 23 C 1.50702 * 109.47399 * 175.52943 * 22 21 3 24 24 C 1.38232 * 120.00141 * 269.73070 * 23 22 21 25 25 C 1.38236 * 119.99693 * 179.78822 * 24 23 22 26 26 C 1.38231 * 120.00100 * 0.46056 * 25 24 23 27 27 C 1.38232 * 119.99870 * 359.76257 * 26 25 24 28 28 C 1.38233 * 120.00262 * 0.03204 * 27 26 25 29 29 H 1.09002 * 109.47632 * 304.12398 * 1 2 3 30 30 H 1.08999 * 109.47284 * 64.12669 * 1 2 3 31 31 H 1.09001 * 109.46718 * 184.12332 * 1 2 3 32 32 H 1.08994 * 109.47367 * 240.00330 * 2 1 3 33 33 H 1.08996 * 109.47146 * 119.99219 * 2 1 3 34 34 H 1.09001 * 109.48819 * 58.39608 * 5 3 2 35 35 H 1.09004 * 109.50504 * 298.34726 * 5 3 2 36 36 H 1.08992 * 109.47305 * 180.02562 * 9 7 6 37 37 H 1.09007 * 109.46821 * 300.00769 * 9 7 6 38 38 H 1.09007 * 109.46679 * 60.00204 * 9 7 6 39 39 H 1.08996 * 109.47482 * 304.99712 * 10 7 6 40 40 H 1.09006 * 109.47160 * 184.99509 * 10 7 6 41 41 H 0.96999 * 119.99823 * 359.97438 * 14 13 11 42 42 H 1.09002 * 109.49135 * 179.28713 * 19 6 5 43 43 H 1.08998 * 109.49247 * 299.35660 * 19 6 5 44 44 H 1.09002 * 109.48842 * 181.62838 * 20 19 6 45 45 H 1.09001 * 109.49091 * 61.56372 * 20 19 6 46 46 H 1.08997 * 109.47084 * 295.53469 * 22 21 3 47 47 H 1.09004 * 109.47161 * 55.53240 * 22 21 3 48 48 H 1.08001 * 120.00266 * 359.97438 * 24 23 22 49 49 H 1.07997 * 119.99509 * 180.25049 * 25 24 23 50 50 H 1.08001 * 119.99710 * 179.79597 * 26 25 24 51 51 H 1.08001 * 119.99729 * 180.02562 * 27 26 25 52 52 H 1.07997 * 119.99775 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6081 1.9809 -0.8438 5 6 1.6319 2.1285 1.3060 6 7 2.1563 3.5011 1.3200 7 6 1.7215 4.2186 2.5259 8 1 0.6325 4.2602 2.5511 9 6 2.2326 3.4854 3.7678 10 6 2.2864 5.6402 2.5051 11 6 1.6879 6.4018 1.3506 12 1 0.9754 5.9200 0.6973 13 6 2.0489 7.7138 1.1288 14 7 2.9160 8.3007 1.9247 15 14 1.3075 8.6574 -0.3026 16 1 1.8557 10.0375 -0.3228 17 1 1.6462 7.9721 -1.5758 18 1 -0.1684 8.7127 -0.1477 19 6 3.6215 3.5033 1.2057 20 6 4.0295 2.8174 -0.1003 21 7 3.5050 1.4447 -0.1144 22 6 3.9399 0.7273 -1.3203 23 6 5.4357 0.8440 -1.4623 24 6 5.9824 1.8935 -2.1766 25 6 7.3546 2.0029 -2.3031 26 6 8.1797 1.0575 -1.7233 27 6 7.6328 0.0054 -1.0128 28 6 6.2607 -0.1017 -0.8827 29 1 -0.3634 0.5765 0.8507 30 1 -0.3634 0.4484 -0.9246 31 1 -0.3633 -1.0250 0.0739 32 1 1.8933 -0.5137 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 2.0407 1.5743 2.1509 35 1 0.5446 2.1538 1.3796 36 1 1.9096 4.0174 4.6625 37 1 1.8305 2.4723 3.7828 38 1 3.3216 3.4437 3.7426 39 1 3.3695 5.5992 2.3907 40 1 2.0385 6.1434 3.4397 41 1 3.3013 7.8105 2.6678 42 1 3.9848 4.5309 1.2056 43 1 4.0529 2.9647 2.0494 44 1 5.1167 2.7921 -0.1735 45 1 3.6206 3.3715 -0.9453 46 1 3.6637 -0.3238 -1.2372 47 1 3.4569 1.1618 -2.1956 48 1 5.3376 2.6297 -2.6334 49 1 7.7819 2.8251 -2.8578 50 1 9.2517 1.1411 -1.8249 51 1 8.2774 -0.7331 -0.5594 52 1 5.8335 -0.9239 -0.3280 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411522362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:18 Heat of formation + Delta-G solvation = 10.072691 kcal Electronic energy + Delta-G solvation = -27838.907638 eV Core-core repulsion = 24415.976459 eV Total energy + Delta-G solvation = -3422.931179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.20735 -39.93953 -37.94676 -35.25927 -34.97998 -33.13158 -31.78297 -31.43576 -30.45308 -28.83279 -27.76422 -25.63087 -25.29095 -24.54446 -23.49991 -22.80673 -21.94225 -20.93482 -20.19580 -18.78072 -17.68185 -17.49367 -16.58240 -16.36384 -16.21217 -15.92842 -15.64351 -15.52783 -15.27908 -15.18494 -14.90111 -14.62744 -14.41576 -14.21574 -14.11271 -13.55077 -13.38015 -13.32483 -13.24642 -13.08316 -12.94711 -12.64041 -12.57350 -12.51145 -12.25394 -12.11070 -11.94968 -11.92986 -11.85460 -11.71907 -11.56783 -11.26797 -11.03509 -10.61443 -10.46564 -9.78840 -9.71757 -9.30222 -8.98861 -8.57098 -6.22801 0.42033 0.52177 1.51540 1.60085 1.79054 2.60158 2.69621 3.01645 3.11460 3.27858 3.75874 3.80324 3.92496 3.96655 4.09903 4.16161 4.19599 4.23353 4.28296 4.29699 4.36218 4.39966 4.42754 4.46636 4.54779 4.57286 4.62665 4.66546 4.73163 4.79976 4.82016 4.88443 4.95621 4.98371 4.99592 5.05373 5.11210 5.15664 5.17711 5.19050 5.23494 5.34107 5.44098 5.51013 5.57757 5.63819 5.70744 5.99740 6.03166 6.11434 6.15287 6.31746 6.33808 6.41621 6.72494 7.54270 8.83473 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.010366 B = 0.004268 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.531040 B = 6558.653516 C = 7891.388190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C 0.091 3.909 4 H 0.030 0.970 5 C 0.063 3.937 6 N -0.530 5.530 7 C 0.101 3.899 8 H 0.063 0.937 9 C -0.172 4.172 10 C 0.019 3.981 11 C -0.576 4.576 12 H 0.047 0.953 13 C -0.043 4.043 14 N -0.947 5.947 15 Si 1.112 2.888 16 H -0.286 1.286 17 H -0.276 1.276 18 H -0.271 1.271 19 C 0.068 3.932 20 C 0.073 3.927 21 N -0.525 5.525 22 C 0.094 3.906 23 C -0.090 4.090 24 C -0.129 4.129 25 C -0.132 4.132 26 C -0.127 4.127 27 C -0.127 4.127 28 C -0.108 4.108 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.042 0.958 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.045 0.955 39 H -0.006 1.006 40 H -0.014 1.014 41 H 0.252 0.748 42 H 0.052 0.948 43 H 0.033 0.967 44 H 0.081 0.919 45 H 0.020 0.980 46 H 0.105 0.895 47 H 0.036 0.964 48 H 0.111 0.889 49 H 0.131 0.869 50 H 0.141 0.859 51 H 0.143 0.857 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.220 -22.166 -6.867 23.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.145 4.145 3 C -0.017 4.017 4 H 0.048 0.952 5 C -0.065 4.065 6 N -0.254 5.254 7 C -0.007 4.007 8 H 0.082 0.918 9 C -0.231 4.231 10 C -0.018 4.018 11 C -0.614 4.614 12 H 0.065 0.935 13 C -0.239 4.239 14 N -0.586 5.586 15 Si 0.935 3.065 16 H -0.212 1.212 17 H -0.202 1.202 18 H -0.196 1.196 19 C -0.060 4.060 20 C -0.056 4.056 21 N -0.250 5.250 22 C -0.032 4.032 23 C -0.090 4.090 24 C -0.148 4.148 25 C -0.150 4.150 26 C -0.145 4.145 27 C -0.145 4.145 28 C -0.126 4.126 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.013 0.987 40 H 0.004 0.996 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.051 0.949 44 H 0.099 0.901 45 H 0.039 0.961 46 H 0.123 0.877 47 H 0.054 0.946 48 H 0.129 0.871 49 H 0.149 0.851 50 H 0.158 0.842 51 H 0.161 0.839 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.184 -20.705 -7.634 22.460 hybrid contribution 0.163 -0.671 1.051 1.257 sum 4.346 -21.375 -6.583 22.784 Atomic orbital electron populations 1.21792 0.94736 1.02496 1.01797 1.21547 0.96286 0.93484 1.03185 1.21738 0.86591 0.97046 0.96369 0.95163 1.22273 0.99682 0.87771 0.96772 1.62177 1.09705 1.14792 1.38756 1.21464 0.98593 0.93395 0.87263 0.91835 1.22373 1.00916 1.00949 0.98854 1.19263 0.94870 0.92539 0.95140 1.22233 1.26951 0.98569 1.13661 0.93498 1.27185 0.95895 0.97312 1.03513 1.70925 1.29950 1.40189 1.17547 0.82979 0.75947 0.74721 0.72831 1.21175 1.20207 1.19614 1.21966 0.88532 0.98866 0.96667 1.22019 0.99602 0.88121 0.95827 1.62320 1.10036 1.14541 1.38087 1.21156 0.91013 1.00417 0.90649 1.19837 0.95325 0.95687 0.98202 1.21221 0.95907 0.97860 0.99785 1.21363 0.93381 0.99806 1.00430 1.21457 1.00791 0.94609 0.97654 1.21463 0.95196 0.98806 0.98985 1.21224 0.93689 0.99058 0.98629 0.92929 0.93068 0.90900 0.90476 0.90892 0.94022 0.90289 0.92396 0.91171 0.93556 0.98743 0.99555 0.93890 0.92948 0.94915 0.90106 0.96140 0.87702 0.94622 0.87088 0.85078 0.84158 0.83916 0.84737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.76 71.98 0.70 -1.94 16 2 C -0.11 -2.06 5.22 30.60 0.16 -1.90 16 3 C 0.09 2.43 2.03 44.92 0.09 2.52 16 4 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 5 C 0.06 1.93 4.12 86.31 0.36 2.28 16 6 N -0.53 -20.80 4.45 -870.47 -3.88 -24.68 16 7 C 0.10 4.27 2.37 44.92 0.11 4.37 16 8 H 0.06 2.74 8.14 -2.38 -0.02 2.72 16 9 C -0.17 -6.00 8.50 71.98 0.61 -5.38 16 10 C 0.02 1.00 3.45 29.84 0.10 1.10 16 11 C -0.58 -33.48 8.84 25.60 0.23 -33.25 16 12 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 13 C -0.04 -2.57 5.46 84.65 0.46 -2.10 16 14 N -0.95 -60.24 13.65 21.45 0.29 -59.95 16 15 Si 1.11 52.69 29.90 68.60 2.05 54.74 16 16 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 17 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 C 0.07 2.65 4.84 86.31 0.42 3.07 16 20 C 0.07 2.42 4.84 86.31 0.42 2.84 16 21 N -0.53 -14.29 4.63 -874.98 -4.05 -18.34 16 22 C 0.09 2.12 4.69 85.56 0.40 2.52 16 23 C -0.09 -2.06 4.37 -19.87 -0.09 -2.14 16 24 C -0.13 -3.09 7.81 22.27 0.17 -2.91 16 25 C -0.13 -2.81 10.05 22.27 0.22 -2.58 16 26 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 27 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 28 C -0.11 -2.16 9.70 22.27 0.22 -1.94 16 29 H 0.05 1.00 6.41 -2.39 -0.02 0.99 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.28 6.19 -2.39 -0.01 1.27 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.04 1.24 6.48 -2.39 -0.02 1.23 16 35 H 0.08 2.33 6.56 -2.39 -0.02 2.31 16 36 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.07 2.09 6.48 -2.38 -0.02 2.07 16 38 H 0.05 1.65 6.56 -2.38 -0.02 1.63 16 39 H -0.01 -0.31 5.87 -2.39 -0.01 -0.32 16 40 H -0.01 -0.77 8.01 -2.38 -0.02 -0.79 16 41 H 0.25 16.23 7.22 -92.71 -0.67 15.56 16 42 H 0.05 2.45 5.95 -2.39 -0.01 2.44 16 43 H 0.03 1.24 6.57 -2.39 -0.02 1.23 16 44 H 0.08 2.63 5.81 -2.39 -0.01 2.62 16 45 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.10 1.91 6.35 -2.39 -0.02 1.89 16 47 H 0.04 0.84 8.08 -2.39 -0.02 0.82 16 48 H 0.11 2.75 8.05 -2.91 -0.02 2.72 16 49 H 0.13 2.39 8.06 -2.91 -0.02 2.36 16 50 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 51 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 52 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -67.72 387.65 0.42 -67.31 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.97 Total: 20.56 kcal Atomic # 6 Polarization: -44.67 SS G_CDS: 5.03 Total: -39.64 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -7.63 Total: -102.97 kcal Atomic # 14 Polarization: 52.69 SS G_CDS: 2.05 Total: 54.74 kcal Total: -67.72 0.42 -67.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411522362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.378 kcal (2) G-P(sol) polarization free energy of solvation -67.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.305 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds