Wall clock time and date at job start Tue Mar 31 2020 11:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47291 * 2 1 4 4 C 1.53010 * 109.47220 * 240.00327 * 2 1 3 5 5 C 1.50698 * 109.46920 * 174.99949 * 4 2 1 6 6 H 1.07996 * 120.00438 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99669 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99905 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99841 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46930 * 90.00036 * 9 7 5 11 11 H 1.48499 * 109.47023 * 209.99946 * 9 7 5 12 12 H 1.48504 * 109.47332 * 330.00042 * 9 7 5 13 13 N 1.46893 * 109.47326 * 120.00288 * 2 1 3 14 14 C 1.48194 * 111.00025 * 63.23640 * 13 2 1 15 15 C 1.53936 * 112.77630 * 191.68960 * 14 13 2 16 16 N 1.44266 * 112.55159 * 318.37485 * 15 14 13 17 17 C 1.46903 * 111.00035 * 217.12621 * 16 15 14 18 18 C 1.50699 * 109.47257 * 302.04568 * 17 16 15 19 19 C 1.38234 * 119.99883 * 274.59074 * 18 17 16 20 20 C 1.38241 * 120.00036 * 179.78895 * 19 18 17 21 21 C 1.38231 * 119.99675 * 0.44370 * 20 19 18 22 22 C 1.38244 * 120.00270 * 359.80704 * 21 20 19 23 23 C 1.38231 * 119.99583 * 359.97438 * 22 21 20 24 24 C 1.48110 * 109.97563 * 93.90138 * 16 15 14 25 25 C 1.46130 * 112.19104 * 279.72191 * 24 16 15 26 26 H 1.09004 * 108.99700 * 300.32464 * 25 24 16 27 27 C 1.53004 * 108.99563 * 181.49107 * 25 24 16 28 28 C 1.44251 * 110.99901 * 294.99835 * 13 2 1 29 29 H 1.08994 * 109.47174 * 299.99715 * 1 2 3 30 30 H 1.09004 * 109.46599 * 59.99800 * 1 2 3 31 31 H 1.08998 * 109.46650 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47018 * 294.99781 * 4 2 1 33 33 H 1.09001 * 109.46907 * 54.99949 * 4 2 1 34 34 H 0.96998 * 120.00006 * 180.02562 * 8 7 5 35 35 H 1.08998 * 108.82392 * 312.53791 * 14 13 2 36 36 H 1.09004 * 108.82422 * 70.84025 * 14 13 2 37 37 H 1.08997 * 108.86486 * 197.58669 * 15 14 13 38 38 H 1.08998 * 108.86603 * 79.17207 * 15 14 13 39 39 H 1.09006 * 109.46453 * 62.04347 * 17 16 15 40 40 H 1.08994 * 109.47077 * 182.03736 * 17 16 15 41 41 H 1.08003 * 120.00038 * 0.02562 * 19 18 17 42 42 H 1.07996 * 119.99843 * 180.27032 * 20 19 18 43 43 H 1.07998 * 120.00126 * 179.83426 * 21 20 19 44 44 H 1.07998 * 119.99784 * 179.97438 * 22 21 20 45 45 H 1.08007 * 119.99490 * 179.97438 * 23 22 21 46 46 H 1.09003 * 108.93750 * 40.42484 * 24 16 15 47 47 H 1.09002 * 108.93706 * 159.02596 * 24 16 15 48 48 H 1.09000 * 109.47196 * 59.99624 * 27 25 24 49 49 H 1.08993 * 109.47017 * 180.02562 * 27 25 24 50 50 H 1.09003 * 109.46774 * 300.00258 * 27 25 24 51 51 H 1.09006 * 109.60773 * 100.09640 * 28 13 2 52 52 H 1.08993 * 109.75111 * 339.67718 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2494 5 6 3.5420 -0.6148 -1.3128 6 1 4.0790 -0.0854 -0.5397 7 6 4.2305 -1.1934 -2.3579 8 7 3.5765 -1.8376 -3.2996 9 14 6.0921 -1.0609 -2.4369 10 1 6.7010 -2.2129 -1.7245 11 1 6.5291 -1.0695 -3.8561 12 1 6.5261 0.2048 -1.7929 13 7 2.0197 -0.6925 1.1993 14 6 1.6094 -2.1165 1.1951 15 6 1.8463 -2.8090 2.5493 16 7 3.1076 -2.4415 3.1455 17 6 3.7206 -3.5880 3.8294 18 6 2.7760 -4.1091 4.8816 19 6 2.7652 -3.5424 6.1424 20 6 1.8956 -4.0175 7.1063 21 6 1.0434 -5.0654 6.8122 22 6 1.0579 -5.6356 5.5529 23 6 1.9243 -5.1575 4.5877 24 6 2.9148 -1.3078 4.0789 25 6 2.8406 -0.0255 3.3820 26 1 3.7670 0.1323 2.8298 27 6 2.6792 1.0932 4.4133 28 6 1.6555 0.0259 2.3960 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.7517 -1.7715 -1.2057 33 1 1.6054 -0.2616 -2.1370 34 1 4.0609 -2.2450 -4.0346 35 1 0.5489 -2.1762 0.9505 36 1 2.1755 -2.6434 0.4269 37 1 1.8279 -3.8887 2.4011 38 1 1.0411 -2.5351 3.2309 39 1 3.9272 -4.3754 3.1044 40 1 4.6522 -3.2745 4.3004 41 1 3.4334 -2.7259 6.3732 42 1 1.8841 -3.5718 8.0899 43 1 0.3660 -5.4384 7.5660 44 1 0.3924 -6.4546 5.3233 45 1 1.9359 -5.6032 3.6040 46 1 1.9907 -1.4616 4.6362 47 1 3.7487 -1.2814 4.7804 48 1 3.5347 1.0908 5.0888 49 1 2.6226 2.0537 3.9014 50 1 1.7650 0.9317 4.9844 51 1 0.7810 -0.4399 2.8505 52 1 1.4302 1.0632 2.1487 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411800938.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:03 Heat of formation + Delta-G solvation = 37.300135 kcal Electronic energy + Delta-G solvation = -28127.925056 eV Core-core repulsion = 24706.174548 eV Total energy + Delta-G solvation = -3421.750508 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.17422 -38.76015 -36.55499 -34.58431 -32.65170 -31.63123 -31.06751 -30.31677 -28.25530 -27.17171 -26.67776 -25.15460 -23.90204 -22.84936 -22.54318 -21.60212 -20.41466 -19.67196 -18.33985 -16.80715 -16.21821 -15.90198 -15.88958 -15.41773 -15.05796 -14.69703 -14.37317 -14.19040 -14.06695 -13.61392 -13.44933 -13.13728 -12.89065 -12.85434 -12.64653 -12.27800 -12.11106 -12.07201 -11.75926 -11.56230 -11.40785 -11.34647 -11.14204 -11.05353 -10.87350 -10.65369 -10.59123 -10.48585 -10.29887 -10.19806 -10.10339 -9.71747 -9.04346 -9.01695 -8.92259 -8.87703 -8.16178 -7.99377 -7.11791 -5.79474 -3.75938 1.20600 1.26321 3.47011 3.52242 3.57150 3.61950 4.14266 4.62729 4.66487 4.70358 4.72558 4.85577 4.94707 5.13119 5.19871 5.25321 5.36658 5.39066 5.49319 5.57161 5.58284 5.60219 5.69751 5.78413 5.80343 5.84901 5.86619 5.88642 5.92441 5.97019 6.00332 6.07492 6.10386 6.12801 6.26223 6.30106 6.32123 6.36597 6.47648 6.49512 6.57148 6.77905 6.80375 6.86881 6.92690 7.09695 7.34112 7.40952 7.66956 7.86607 8.13404 8.24207 8.27818 8.69377 9.30563 9.85469 11.32720 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.003945 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.071759 B = 7095.996427 C = 7580.666006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.091 3.909 3 H 0.068 0.932 4 C 0.029 3.971 5 C -0.482 4.482 6 H 0.062 0.938 7 C 0.050 3.950 8 N -0.907 5.907 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.293 1.293 12 H -0.276 1.276 13 N -0.513 5.513 14 C 0.074 3.926 15 C 0.061 3.939 16 N -0.499 5.499 17 C 0.091 3.909 18 C -0.115 4.115 19 C -0.111 4.111 20 C -0.123 4.123 21 C -0.126 4.126 22 C -0.121 4.121 23 C -0.110 4.110 24 C 0.073 3.927 25 C -0.092 4.092 26 H 0.091 0.909 27 C -0.143 4.143 28 C 0.078 3.922 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.019 0.981 33 H 0.015 0.985 34 H 0.255 0.745 35 H 0.026 0.974 36 H 0.089 0.911 37 H 0.065 0.935 38 H 0.027 0.973 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.122 0.878 46 H 0.028 0.972 47 H 0.060 0.940 48 H 0.050 0.950 49 H 0.056 0.944 50 H 0.046 0.954 51 H 0.020 0.980 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.371 -3.287 20.439 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.016 4.016 3 H 0.086 0.914 4 C -0.008 4.008 5 C -0.520 4.520 6 H 0.080 0.920 7 C -0.149 4.149 8 N -0.548 5.548 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.219 1.219 12 H -0.201 1.201 13 N -0.236 5.236 14 C -0.054 4.054 15 C -0.068 4.068 16 N -0.220 5.220 17 C -0.037 4.037 18 C -0.117 4.117 19 C -0.129 4.129 20 C -0.141 4.141 21 C -0.144 4.144 22 C -0.139 4.139 23 C -0.129 4.129 24 C -0.054 4.054 25 C -0.111 4.111 26 H 0.109 0.891 27 C -0.201 4.201 28 C -0.052 4.052 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.107 0.893 37 H 0.084 0.916 38 H 0.045 0.955 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.140 0.860 46 H 0.046 0.954 47 H 0.079 0.921 48 H 0.069 0.931 49 H 0.075 0.925 50 H 0.065 0.935 51 H 0.039 0.961 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.517 -3.220 19.855 20.616 hybrid contribution -0.520 -0.358 0.621 0.886 sum -5.037 -3.579 20.476 21.388 Atomic orbital electron populations 1.22557 1.00312 1.01035 1.00444 1.21953 0.89525 0.98147 0.92013 0.91403 1.19214 0.96425 0.95342 0.89830 1.21173 0.91707 1.32478 1.06667 0.92026 1.24982 0.97815 0.96038 0.96042 1.69968 1.35057 1.37336 1.12484 0.86639 0.86730 0.78352 0.76470 1.20958 1.21887 1.20092 1.60357 1.61918 1.00628 1.00715 1.22424 0.97329 0.89291 0.96368 1.21966 0.89574 0.99208 0.96044 1.61793 1.25181 1.04986 1.30024 1.21442 0.95485 0.93497 0.93296 1.20899 0.98765 0.96136 0.95866 1.21102 0.99157 0.99717 0.92949 1.21129 0.96499 0.97202 0.99243 1.21118 0.99383 0.97023 0.96886 1.21156 0.99054 1.00071 0.93641 1.21166 0.95924 0.96475 0.99311 1.21098 0.99359 0.91540 0.93429 1.20208 1.01605 0.93362 0.95972 0.89111 1.21820 1.00828 0.98767 0.98723 1.21692 0.94319 0.97649 0.91520 0.94416 0.92724 0.93072 0.96314 0.96707 0.93509 0.95558 0.89267 0.91623 0.95525 0.89653 0.89942 0.86255 0.86366 0.86439 0.86253 0.85985 0.95418 0.92118 0.93051 0.92490 0.93518 0.96129 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 8.72 37.16 0.32 -2.92 16 2 C 0.09 1.88 2.10 -67.71 -0.14 1.74 16 3 H 0.07 1.44 7.94 -51.93 -0.41 1.03 16 4 C 0.03 0.74 4.15 -27.88 -0.12 0.62 16 5 C -0.48 -13.57 8.84 -34.44 -0.30 -13.87 16 6 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16 7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16 8 N -0.91 -27.55 13.29 55.43 0.74 -26.81 16 9 Si 0.89 22.46 29.54 -169.99 -5.02 17.44 16 10 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 13 N -0.51 -9.76 3.85 -226.28 -0.87 -10.63 16 14 C 0.07 1.35 4.81 -2.62 -0.01 1.34 16 15 C 0.06 0.93 4.07 -4.74 -0.02 0.91 16 16 N -0.50 -7.41 4.62 -240.67 -1.11 -8.53 16 17 C 0.09 1.13 5.31 -4.97 -0.03 1.11 16 18 C -0.11 -1.31 4.32 -104.63 -0.45 -1.76 16 19 C -0.11 -1.17 8.33 -39.58 -0.33 -1.50 16 20 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 21 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 22 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 23 C -0.11 -1.22 8.55 -39.59 -0.34 -1.56 16 24 C 0.07 0.97 2.86 -6.42 -0.02 0.96 16 25 C -0.09 -1.32 2.59 -93.22 -0.24 -1.56 16 26 H 0.09 1.55 8.12 -51.93 -0.42 1.13 16 27 C -0.14 -1.64 9.02 37.16 0.34 -1.30 16 28 C 0.08 1.24 3.71 -4.58 -0.02 1.22 16 29 H 0.04 0.59 7.21 -51.93 -0.37 0.21 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.90 6.23 -51.93 -0.32 0.58 16 32 H 0.02 0.50 6.32 -51.93 -0.33 0.18 16 33 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 35 H 0.03 0.47 5.85 -51.93 -0.30 0.17 16 36 H 0.09 1.95 6.78 -51.93 -0.35 1.60 16 37 H 0.07 0.93 5.99 -51.93 -0.31 0.62 16 38 H 0.03 0.40 6.55 -51.93 -0.34 0.07 16 39 H 0.09 1.08 8.00 -51.93 -0.42 0.66 16 40 H 0.08 0.96 7.91 -51.93 -0.41 0.55 16 41 H 0.12 1.14 7.22 -52.48 -0.38 0.76 16 42 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 43 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 44 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.12 1.27 7.39 -52.48 -0.39 0.88 16 46 H 0.03 0.37 6.77 -51.93 -0.35 0.02 16 47 H 0.06 0.74 7.00 -51.93 -0.36 0.37 16 48 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 50 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.02 0.32 6.96 -51.93 -0.36 -0.04 16 52 H 0.06 0.94 7.10 -51.93 -0.37 0.58 16 LS Contribution 385.80 15.07 5.81 5.81 Total: -1.00 -30.47 385.80 -12.23 -42.70 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -9.13 Total: 0.04 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -2.65 Total: -20.03 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: -1.25 Total: -45.96 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.47 -12.23 -42.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411800938.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.999 kcal (2) G-P(sol) polarization free energy of solvation -30.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds