Wall clock time and date at job start Tue Mar 31 2020 11:31:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.09001 * 109.47291 * 2 1
4 4 C 1.53010 * 109.47220 * 240.00327 * 2 1 3
5 5 C 1.50698 * 109.46920 * 174.99949 * 4 2 1
6 6 H 1.07996 * 120.00438 * 359.97438 * 5 4 2
7 7 C 1.37882 * 119.99669 * 179.97438 * 5 4 2
8 8 N 1.31510 * 119.99905 * 0.02562 * 7 5 4
9 9 Si 1.86798 * 119.99841 * 179.97438 * 7 5 4
10 10 H 1.48503 * 109.46930 * 90.00036 * 9 7 5
11 11 H 1.48499 * 109.47023 * 209.99946 * 9 7 5
12 12 H 1.48504 * 109.47332 * 330.00042 * 9 7 5
13 13 N 1.46893 * 109.47326 * 120.00288 * 2 1 3
14 14 C 1.48194 * 111.00025 * 63.23640 * 13 2 1
15 15 C 1.53936 * 112.77630 * 191.68960 * 14 13 2
16 16 N 1.44266 * 112.55159 * 318.37485 * 15 14 13
17 17 C 1.46903 * 111.00035 * 217.12621 * 16 15 14
18 18 C 1.50699 * 109.47257 * 302.04568 * 17 16 15
19 19 C 1.38234 * 119.99883 * 274.59074 * 18 17 16
20 20 C 1.38241 * 120.00036 * 179.78895 * 19 18 17
21 21 C 1.38231 * 119.99675 * 0.44370 * 20 19 18
22 22 C 1.38244 * 120.00270 * 359.80704 * 21 20 19
23 23 C 1.38231 * 119.99583 * 359.97438 * 22 21 20
24 24 C 1.48110 * 109.97563 * 93.90138 * 16 15 14
25 25 C 1.46130 * 112.19104 * 279.72191 * 24 16 15
26 26 H 1.09004 * 108.99700 * 300.32464 * 25 24 16
27 27 C 1.53004 * 108.99563 * 181.49107 * 25 24 16
28 28 C 1.44251 * 110.99901 * 294.99835 * 13 2 1
29 29 H 1.08994 * 109.47174 * 299.99715 * 1 2 3
30 30 H 1.09004 * 109.46599 * 59.99800 * 1 2 3
31 31 H 1.08998 * 109.46650 * 179.97438 * 1 2 3
32 32 H 1.08999 * 109.47018 * 294.99781 * 4 2 1
33 33 H 1.09001 * 109.46907 * 54.99949 * 4 2 1
34 34 H 0.96998 * 120.00006 * 180.02562 * 8 7 5
35 35 H 1.08998 * 108.82392 * 312.53791 * 14 13 2
36 36 H 1.09004 * 108.82422 * 70.84025 * 14 13 2
37 37 H 1.08997 * 108.86486 * 197.58669 * 15 14 13
38 38 H 1.08998 * 108.86603 * 79.17207 * 15 14 13
39 39 H 1.09006 * 109.46453 * 62.04347 * 17 16 15
40 40 H 1.08994 * 109.47077 * 182.03736 * 17 16 15
41 41 H 1.08003 * 120.00038 * 0.02562 * 19 18 17
42 42 H 1.07996 * 119.99843 * 180.27032 * 20 19 18
43 43 H 1.07998 * 120.00126 * 179.83426 * 21 20 19
44 44 H 1.07998 * 119.99784 * 179.97438 * 22 21 20
45 45 H 1.08007 * 119.99490 * 179.97438 * 23 22 21
46 46 H 1.09003 * 108.93750 * 40.42484 * 24 16 15
47 47 H 1.09002 * 108.93706 * 159.02596 * 24 16 15
48 48 H 1.09000 * 109.47196 * 59.99624 * 27 25 24
49 49 H 1.08993 * 109.47017 * 180.02562 * 27 25 24
50 50 H 1.09003 * 109.46774 * 300.00258 * 27 25 24
51 51 H 1.09006 * 109.60773 * 100.09640 * 28 13 2
52 52 H 1.08993 * 109.75111 * 339.67718 * 28 13 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0401 -0.7212 -1.2494
5 6 3.5420 -0.6148 -1.3128
6 1 4.0790 -0.0854 -0.5397
7 6 4.2305 -1.1934 -2.3579
8 7 3.5765 -1.8376 -3.2996
9 14 6.0921 -1.0609 -2.4369
10 1 6.7010 -2.2129 -1.7245
11 1 6.5291 -1.0695 -3.8561
12 1 6.5261 0.2048 -1.7929
13 7 2.0197 -0.6925 1.1993
14 6 1.6094 -2.1165 1.1951
15 6 1.8463 -2.8090 2.5493
16 7 3.1076 -2.4415 3.1455
17 6 3.7206 -3.5880 3.8294
18 6 2.7760 -4.1091 4.8816
19 6 2.7652 -3.5424 6.1424
20 6 1.8956 -4.0175 7.1063
21 6 1.0434 -5.0654 6.8122
22 6 1.0579 -5.6356 5.5529
23 6 1.9243 -5.1575 4.5877
24 6 2.9148 -1.3078 4.0789
25 6 2.8406 -0.0255 3.3820
26 1 3.7670 0.1323 2.8298
27 6 2.6792 1.0932 4.4133
28 6 1.6555 0.0259 2.3960
29 1 -0.3633 0.5138 0.8900
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3632 -1.0277 -0.0005
32 1 1.7517 -1.7715 -1.2057
33 1 1.6054 -0.2616 -2.1370
34 1 4.0609 -2.2450 -4.0346
35 1 0.5489 -2.1762 0.9505
36 1 2.1755 -2.6434 0.4269
37 1 1.8279 -3.8887 2.4011
38 1 1.0411 -2.5351 3.2309
39 1 3.9272 -4.3754 3.1044
40 1 4.6522 -3.2745 4.3004
41 1 3.4334 -2.7259 6.3732
42 1 1.8841 -3.5718 8.0899
43 1 0.3660 -5.4384 7.5660
44 1 0.3924 -6.4546 5.3233
45 1 1.9359 -5.6032 3.6040
46 1 1.9907 -1.4616 4.6362
47 1 3.7487 -1.2814 4.7804
48 1 3.5347 1.0908 5.0888
49 1 2.6226 2.0537 3.9014
50 1 1.7650 0.9317 4.9844
51 1 0.7810 -0.4399 2.8505
52 1 1.4302 1.0632 2.1487
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000411800938.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:31:03
Heat of formation + Delta-G solvation = 37.300135 kcal
Electronic energy + Delta-G solvation = -28127.925056 eV
Core-core repulsion = 24706.174548 eV
Total energy + Delta-G solvation = -3421.750508 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.63 seconds
Orbital eigenvalues (eV)
-40.17422 -38.76015 -36.55499 -34.58431 -32.65170 -31.63123 -31.06751 -30.31677
-28.25530 -27.17171 -26.67776 -25.15460 -23.90204 -22.84936 -22.54318 -21.60212
-20.41466 -19.67196 -18.33985 -16.80715 -16.21821 -15.90198 -15.88958 -15.41773
-15.05796 -14.69703 -14.37317 -14.19040 -14.06695 -13.61392 -13.44933 -13.13728
-12.89065 -12.85434 -12.64653 -12.27800 -12.11106 -12.07201 -11.75926 -11.56230
-11.40785 -11.34647 -11.14204 -11.05353 -10.87350 -10.65369 -10.59123 -10.48585
-10.29887 -10.19806 -10.10339 -9.71747 -9.04346 -9.01695 -8.92259 -8.87703
-8.16178 -7.99377 -7.11791 -5.79474 -3.75938 1.20600 1.26321 3.47011
3.52242 3.57150 3.61950 4.14266 4.62729 4.66487 4.70358 4.72558
4.85577 4.94707 5.13119 5.19871 5.25321 5.36658 5.39066 5.49319
5.57161 5.58284 5.60219 5.69751 5.78413 5.80343 5.84901 5.86619
5.88642 5.92441 5.97019 6.00332 6.07492 6.10386 6.12801 6.26223
6.30106 6.32123 6.36597 6.47648 6.49512 6.57148 6.77905 6.80375
6.86881 6.92690 7.09695 7.34112 7.40952 7.66956 7.86607 8.13404
8.24207 8.27818 8.69377 9.30563 9.85469 11.32720
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.013622 B = 0.003945 C = 0.003693
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2055.071759 B = 7095.996427 C = 7580.666006
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.091 3.909
3 H 0.068 0.932
4 C 0.029 3.971
5 C -0.482 4.482
6 H 0.062 0.938
7 C 0.050 3.950
8 N -0.907 5.907
9 Si 0.889 3.111
10 H -0.283 1.283
11 H -0.293 1.293
12 H -0.276 1.276
13 N -0.513 5.513
14 C 0.074 3.926
15 C 0.061 3.939
16 N -0.499 5.499
17 C 0.091 3.909
18 C -0.115 4.115
19 C -0.111 4.111
20 C -0.123 4.123
21 C -0.126 4.126
22 C -0.121 4.121
23 C -0.110 4.110
24 C 0.073 3.927
25 C -0.092 4.092
26 H 0.091 0.909
27 C -0.143 4.143
28 C 0.078 3.922
29 H 0.037 0.963
30 H 0.054 0.946
31 H 0.050 0.950
32 H 0.019 0.981
33 H 0.015 0.985
34 H 0.255 0.745
35 H 0.026 0.974
36 H 0.089 0.911
37 H 0.065 0.935
38 H 0.027 0.973
39 H 0.085 0.915
40 H 0.082 0.918
41 H 0.119 0.881
42 H 0.118 0.882
43 H 0.118 0.882
44 H 0.119 0.881
45 H 0.122 0.878
46 H 0.028 0.972
47 H 0.060 0.940
48 H 0.050 0.950
49 H 0.056 0.944
50 H 0.046 0.954
51 H 0.020 0.980
52 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.371 -3.287 20.439 21.387
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.243 4.243
2 C -0.016 4.016
3 H 0.086 0.914
4 C -0.008 4.008
5 C -0.520 4.520
6 H 0.080 0.920
7 C -0.149 4.149
8 N -0.548 5.548
9 Si 0.718 3.282
10 H -0.210 1.210
11 H -0.219 1.219
12 H -0.201 1.201
13 N -0.236 5.236
14 C -0.054 4.054
15 C -0.068 4.068
16 N -0.220 5.220
17 C -0.037 4.037
18 C -0.117 4.117
19 C -0.129 4.129
20 C -0.141 4.141
21 C -0.144 4.144
22 C -0.139 4.139
23 C -0.129 4.129
24 C -0.054 4.054
25 C -0.111 4.111
26 H 0.109 0.891
27 C -0.201 4.201
28 C -0.052 4.052
29 H 0.056 0.944
30 H 0.073 0.927
31 H 0.069 0.931
32 H 0.037 0.963
33 H 0.033 0.967
34 H 0.065 0.935
35 H 0.044 0.956
36 H 0.107 0.893
37 H 0.084 0.916
38 H 0.045 0.955
39 H 0.103 0.897
40 H 0.101 0.899
41 H 0.137 0.863
42 H 0.136 0.864
43 H 0.136 0.864
44 H 0.137 0.863
45 H 0.140 0.860
46 H 0.046 0.954
47 H 0.079 0.921
48 H 0.069 0.931
49 H 0.075 0.925
50 H 0.065 0.935
51 H 0.039 0.961
52 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -4.517 -3.220 19.855 20.616
hybrid contribution -0.520 -0.358 0.621 0.886
sum -5.037 -3.579 20.476 21.388
Atomic orbital electron populations
1.22557 1.00312 1.01035 1.00444 1.21953 0.89525 0.98147 0.92013
0.91403 1.19214 0.96425 0.95342 0.89830 1.21173 0.91707 1.32478
1.06667 0.92026 1.24982 0.97815 0.96038 0.96042 1.69968 1.35057
1.37336 1.12484 0.86639 0.86730 0.78352 0.76470 1.20958 1.21887
1.20092 1.60357 1.61918 1.00628 1.00715 1.22424 0.97329 0.89291
0.96368 1.21966 0.89574 0.99208 0.96044 1.61793 1.25181 1.04986
1.30024 1.21442 0.95485 0.93497 0.93296 1.20899 0.98765 0.96136
0.95866 1.21102 0.99157 0.99717 0.92949 1.21129 0.96499 0.97202
0.99243 1.21118 0.99383 0.97023 0.96886 1.21156 0.99054 1.00071
0.93641 1.21166 0.95924 0.96475 0.99311 1.21098 0.99359 0.91540
0.93429 1.20208 1.01605 0.93362 0.95972 0.89111 1.21820 1.00828
0.98767 0.98723 1.21692 0.94319 0.97649 0.91520 0.94416 0.92724
0.93072 0.96314 0.96707 0.93509 0.95558 0.89267 0.91623 0.95525
0.89653 0.89942 0.86255 0.86366 0.86439 0.86253 0.85985 0.95418
0.92118 0.93051 0.92490 0.93518 0.96129 0.92165
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.24 8.72 37.16 0.32 -2.92 16
2 C 0.09 1.88 2.10 -67.71 -0.14 1.74 16
3 H 0.07 1.44 7.94 -51.93 -0.41 1.03 16
4 C 0.03 0.74 4.15 -27.88 -0.12 0.62 16
5 C -0.48 -13.57 8.84 -34.44 -0.30 -13.87 16
6 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16
7 C 0.05 1.45 5.46 -17.82 -0.10 1.35 16
8 N -0.91 -27.55 13.29 55.43 0.74 -26.81 16
9 Si 0.89 22.46 29.54 -169.99 -5.02 17.44 16
10 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16
11 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16
12 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16
13 N -0.51 -9.76 3.85 -226.28 -0.87 -10.63 16
14 C 0.07 1.35 4.81 -2.62 -0.01 1.34 16
15 C 0.06 0.93 4.07 -4.74 -0.02 0.91 16
16 N -0.50 -7.41 4.62 -240.67 -1.11 -8.53 16
17 C 0.09 1.13 5.31 -4.97 -0.03 1.11 16
18 C -0.11 -1.31 4.32 -104.63 -0.45 -1.76 16
19 C -0.11 -1.17 8.33 -39.58 -0.33 -1.50 16
20 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16
21 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16
22 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16
23 C -0.11 -1.22 8.55 -39.59 -0.34 -1.56 16
24 C 0.07 0.97 2.86 -6.42 -0.02 0.96 16
25 C -0.09 -1.32 2.59 -93.22 -0.24 -1.56 16
26 H 0.09 1.55 8.12 -51.93 -0.42 1.13 16
27 C -0.14 -1.64 9.02 37.16 0.34 -1.30 16
28 C 0.08 1.24 3.71 -4.58 -0.02 1.22 16
29 H 0.04 0.59 7.21 -51.93 -0.37 0.21 16
30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16
31 H 0.05 0.90 6.23 -51.93 -0.32 0.58 16
32 H 0.02 0.50 6.32 -51.93 -0.33 0.18 16
33 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16
34 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16
35 H 0.03 0.47 5.85 -51.93 -0.30 0.17 16
36 H 0.09 1.95 6.78 -51.93 -0.35 1.60 16
37 H 0.07 0.93 5.99 -51.93 -0.31 0.62 16
38 H 0.03 0.40 6.55 -51.93 -0.34 0.07 16
39 H 0.09 1.08 8.00 -51.93 -0.42 0.66 16
40 H 0.08 0.96 7.91 -51.93 -0.41 0.55 16
41 H 0.12 1.14 7.22 -52.48 -0.38 0.76 16
42 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16
43 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16
44 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16
45 H 0.12 1.27 7.39 -52.48 -0.39 0.88 16
46 H 0.03 0.37 6.77 -51.93 -0.35 0.02 16
47 H 0.06 0.74 7.00 -51.93 -0.36 0.37 16
48 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16
49 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16
50 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
51 H 0.02 0.32 6.96 -51.93 -0.36 -0.04 16
52 H 0.06 0.94 7.10 -51.93 -0.37 0.58 16
LS Contribution 385.80 15.07 5.81 5.81
Total: -1.00 -30.47 385.80 -12.23 -42.70
By element:
Atomic # 1 Polarization: 9.17 SS G_CDS: -9.13 Total: 0.04 kcal
Atomic # 6 Polarization: -17.38 SS G_CDS: -2.65 Total: -20.03 kcal
Atomic # 7 Polarization: -44.72 SS G_CDS: -1.25 Total: -45.96 kcal
Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal
Total LS contribution 5.81 Total: 5.81 kcal
Total: -30.47 -12.23 -42.70 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000411800938.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 79.999 kcal
(2) G-P(sol) polarization free energy of solvation -30.471 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.528 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.227 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.698 kcal
(6) G-S(sol) free energy of system = (1) + (5) 37.300 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.63 seconds