Wall clock time and date at job start Tue Mar 31 2020 11:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47291 * 2 1 4 4 C 1.53010 * 109.47220 * 240.00327 * 2 1 3 5 5 C 1.50698 * 109.46920 * 174.99949 * 4 2 1 6 6 H 1.07996 * 120.00438 * 359.97438 * 5 4 2 7 7 C 1.37882 * 119.99669 * 179.97438 * 5 4 2 8 8 N 1.31510 * 119.99905 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99841 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46930 * 90.00036 * 9 7 5 11 11 H 1.48499 * 109.47023 * 209.99946 * 9 7 5 12 12 H 1.48504 * 109.47332 * 330.00042 * 9 7 5 13 13 N 1.46893 * 109.47326 * 120.00288 * 2 1 3 14 14 C 1.48194 * 111.00025 * 63.23640 * 13 2 1 15 15 C 1.53936 * 112.77630 * 191.68960 * 14 13 2 16 16 N 1.44266 * 112.55159 * 318.37485 * 15 14 13 17 17 C 1.46903 * 111.00035 * 217.12621 * 16 15 14 18 18 C 1.50699 * 109.47257 * 302.04568 * 17 16 15 19 19 C 1.38234 * 119.99883 * 274.59074 * 18 17 16 20 20 C 1.38241 * 120.00036 * 179.78895 * 19 18 17 21 21 C 1.38231 * 119.99675 * 0.44370 * 20 19 18 22 22 C 1.38244 * 120.00270 * 359.80704 * 21 20 19 23 23 C 1.38231 * 119.99583 * 359.97438 * 22 21 20 24 24 C 1.48110 * 109.97563 * 93.90138 * 16 15 14 25 25 C 1.46130 * 112.19104 * 279.72191 * 24 16 15 26 26 H 1.09004 * 108.99700 * 300.32464 * 25 24 16 27 27 C 1.53004 * 108.99563 * 181.49107 * 25 24 16 28 28 C 1.44251 * 110.99901 * 294.99835 * 13 2 1 29 29 H 1.08994 * 109.47174 * 299.99715 * 1 2 3 30 30 H 1.09004 * 109.46599 * 59.99800 * 1 2 3 31 31 H 1.08998 * 109.46650 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47018 * 294.99781 * 4 2 1 33 33 H 1.09001 * 109.46907 * 54.99949 * 4 2 1 34 34 H 0.96998 * 120.00006 * 180.02562 * 8 7 5 35 35 H 1.08998 * 108.82392 * 312.53791 * 14 13 2 36 36 H 1.09004 * 108.82422 * 70.84025 * 14 13 2 37 37 H 1.08997 * 108.86486 * 197.58669 * 15 14 13 38 38 H 1.08998 * 108.86603 * 79.17207 * 15 14 13 39 39 H 1.09006 * 109.46453 * 62.04347 * 17 16 15 40 40 H 1.08994 * 109.47077 * 182.03736 * 17 16 15 41 41 H 1.08003 * 120.00038 * 0.02562 * 19 18 17 42 42 H 1.07996 * 119.99843 * 180.27032 * 20 19 18 43 43 H 1.07998 * 120.00126 * 179.83426 * 21 20 19 44 44 H 1.07998 * 119.99784 * 179.97438 * 22 21 20 45 45 H 1.08007 * 119.99490 * 179.97438 * 23 22 21 46 46 H 1.09003 * 108.93750 * 40.42484 * 24 16 15 47 47 H 1.09002 * 108.93706 * 159.02596 * 24 16 15 48 48 H 1.09000 * 109.47196 * 59.99624 * 27 25 24 49 49 H 1.08993 * 109.47017 * 180.02562 * 27 25 24 50 50 H 1.09003 * 109.46774 * 300.00258 * 27 25 24 51 51 H 1.09006 * 109.60773 * 100.09640 * 28 13 2 52 52 H 1.08993 * 109.75111 * 339.67718 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2494 5 6 3.5420 -0.6148 -1.3128 6 1 4.0790 -0.0854 -0.5397 7 6 4.2305 -1.1934 -2.3579 8 7 3.5765 -1.8376 -3.2996 9 14 6.0921 -1.0609 -2.4369 10 1 6.7010 -2.2129 -1.7245 11 1 6.5291 -1.0695 -3.8561 12 1 6.5261 0.2048 -1.7929 13 7 2.0197 -0.6925 1.1993 14 6 1.6094 -2.1165 1.1951 15 6 1.8463 -2.8090 2.5493 16 7 3.1076 -2.4415 3.1455 17 6 3.7206 -3.5880 3.8294 18 6 2.7760 -4.1091 4.8816 19 6 2.7652 -3.5424 6.1424 20 6 1.8956 -4.0175 7.1063 21 6 1.0434 -5.0654 6.8122 22 6 1.0579 -5.6356 5.5529 23 6 1.9243 -5.1575 4.5877 24 6 2.9148 -1.3078 4.0789 25 6 2.8406 -0.0255 3.3820 26 1 3.7670 0.1323 2.8298 27 6 2.6792 1.0932 4.4133 28 6 1.6555 0.0259 2.3960 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.7517 -1.7715 -1.2057 33 1 1.6054 -0.2616 -2.1370 34 1 4.0609 -2.2450 -4.0346 35 1 0.5489 -2.1762 0.9505 36 1 2.1755 -2.6434 0.4269 37 1 1.8279 -3.8887 2.4011 38 1 1.0411 -2.5351 3.2309 39 1 3.9272 -4.3754 3.1044 40 1 4.6522 -3.2745 4.3004 41 1 3.4334 -2.7259 6.3732 42 1 1.8841 -3.5718 8.0899 43 1 0.3660 -5.4384 7.5660 44 1 0.3924 -6.4546 5.3233 45 1 1.9359 -5.6032 3.6040 46 1 1.9907 -1.4616 4.6362 47 1 3.7487 -1.2814 4.7804 48 1 3.5347 1.0908 5.0888 49 1 2.6226 2.0537 3.9014 50 1 1.7650 0.9317 4.9844 51 1 0.7810 -0.4399 2.8505 52 1 1.4302 1.0632 2.1487 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411800938.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:02 Heat of formation + Delta-G solvation = 20.211630 kcal Electronic energy + Delta-G solvation = -28128.666069 eV Core-core repulsion = 24706.174548 eV Total energy + Delta-G solvation = -3422.491521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.21974 -39.84803 -37.87554 -35.75308 -34.70364 -32.85429 -31.84609 -31.65993 -29.65816 -28.90986 -27.61681 -26.51929 -25.22483 -24.54364 -23.42538 -22.66929 -21.65219 -20.82082 -19.86345 -18.30973 -17.58225 -17.23577 -17.14263 -16.49117 -16.41734 -15.93526 -15.79073 -15.50258 -15.29329 -14.60098 -14.52044 -14.41838 -14.26975 -13.91558 -13.85634 -13.61667 -13.55027 -13.28895 -13.14169 -13.01188 -12.86332 -12.56414 -12.48539 -12.38667 -12.20558 -12.12472 -12.03338 -11.87969 -11.68253 -11.60512 -11.42061 -11.25544 -11.03076 -10.88846 -10.42565 -9.80422 -9.72364 -9.09396 -8.60381 -8.05058 -6.08350 0.43130 0.50507 1.43083 1.45062 1.55228 2.51355 2.79711 3.05287 3.24468 3.34337 3.83477 3.90177 3.97510 4.07153 4.16160 4.18448 4.21868 4.28158 4.30758 4.38101 4.46018 4.50856 4.56679 4.59408 4.63645 4.67756 4.71411 4.79554 4.81802 4.86965 4.91376 4.92722 4.99041 5.05665 5.12763 5.16263 5.23068 5.25351 5.30492 5.36428 5.41645 5.55794 5.57166 5.60563 5.62659 5.70732 5.78415 5.95547 6.12561 6.25629 6.28708 6.43282 6.62776 6.82980 7.04998 7.57029 9.07088 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013622 B = 0.003945 C = 0.003693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.071759 B = 7095.996427 C = 7580.666006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.099 3.901 3 H 0.062 0.938 4 C 0.038 3.962 5 C -0.488 4.488 6 H 0.055 0.945 7 C -0.004 4.004 8 N -0.942 5.942 9 Si 0.954 3.046 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.267 1.267 13 N -0.528 5.528 14 C 0.080 3.920 15 C 0.077 3.923 16 N -0.524 5.524 17 C 0.095 3.905 18 C -0.124 4.124 19 C -0.117 4.117 20 C -0.126 4.126 21 C -0.128 4.128 22 C -0.129 4.129 23 C -0.126 4.126 24 C 0.079 3.921 25 C -0.088 4.088 26 H 0.059 0.941 27 C -0.135 4.135 28 C 0.079 3.921 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.047 0.953 32 H -0.004 1.004 33 H -0.013 1.013 34 H 0.257 0.743 35 H 0.028 0.972 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.033 0.967 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.129 0.871 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.135 0.865 45 H 0.119 0.881 46 H 0.034 0.966 47 H 0.076 0.924 48 H 0.065 0.935 49 H 0.056 0.944 50 H 0.059 0.941 51 H 0.029 0.971 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.485 -2.783 23.505 24.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.010 4.010 3 H 0.080 0.920 4 C 0.000 4.000 5 C -0.527 4.527 6 H 0.074 0.926 7 C -0.199 4.199 8 N -0.585 5.585 9 Si 0.780 3.220 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.192 1.192 13 N -0.252 5.252 14 C -0.048 4.048 15 C -0.052 4.052 16 N -0.245 5.245 17 C -0.033 4.033 18 C -0.126 4.126 19 C -0.136 4.136 20 C -0.144 4.144 21 C -0.146 4.146 22 C -0.147 4.147 23 C -0.144 4.144 24 C -0.048 4.048 25 C -0.107 4.107 26 H 0.077 0.923 27 C -0.193 4.193 28 C -0.049 4.049 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.014 0.986 33 H 0.006 0.994 34 H 0.065 0.935 35 H 0.046 0.954 36 H 0.061 0.939 37 H 0.088 0.912 38 H 0.052 0.948 39 H 0.093 0.907 40 H 0.108 0.892 41 H 0.147 0.853 42 H 0.159 0.841 43 H 0.158 0.842 44 H 0.153 0.847 45 H 0.137 0.863 46 H 0.052 0.948 47 H 0.094 0.906 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.078 0.922 51 H 0.047 0.953 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.630 -2.708 22.943 23.562 hybrid contribution -0.496 -0.544 -0.326 0.805 sum -5.125 -3.252 22.618 23.418 Atomic orbital electron populations 1.22400 0.97737 1.01259 1.01778 1.21666 0.91550 0.96972 0.90771 0.92022 1.19046 0.95230 0.94301 0.91386 1.21432 0.93145 1.31873 1.06245 0.92649 1.25784 1.02505 0.95816 0.95800 1.70094 1.36859 1.38354 1.13153 0.85611 0.81153 0.78568 0.76625 1.20599 1.21336 1.19182 1.60256 1.62659 1.00977 1.01276 1.22292 0.96495 0.88928 0.97116 1.21726 0.90282 0.98928 0.94282 1.61717 1.24896 1.06445 1.31486 1.21353 0.95972 0.92533 0.93408 1.20761 0.98961 0.96824 0.96055 1.21261 0.99617 1.00019 0.92693 1.21441 0.95886 0.97063 1.00003 1.21457 0.99427 0.96670 0.97080 1.21406 0.98989 1.00521 0.93764 1.21267 0.96582 0.96883 0.99695 1.21058 1.00248 0.90362 0.93144 1.20172 0.99164 0.95246 0.96156 0.92252 1.21743 1.02165 0.97317 0.98064 1.21766 0.95437 0.97346 0.90390 0.91793 0.92599 0.93380 0.98573 0.99441 0.93462 0.95362 0.93866 0.91180 0.94836 0.90675 0.89178 0.85302 0.84147 0.84174 0.84739 0.86347 0.94804 0.90572 0.91600 0.92498 0.92160 0.95259 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.99 8.72 71.98 0.63 -5.37 16 2 C 0.10 4.13 2.10 44.92 0.09 4.23 16 3 H 0.06 2.64 7.94 -2.39 -0.02 2.62 16 4 C 0.04 2.00 4.15 29.85 0.12 2.12 16 5 C -0.49 -28.41 8.84 25.60 0.23 -28.19 16 6 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 7 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 8 N -0.94 -58.96 13.29 21.45 0.28 -58.67 16 9 Si 0.95 46.92 29.54 68.60 2.03 48.95 16 10 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 11 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 12 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 13 N -0.53 -20.30 3.85 -869.83 -3.34 -23.65 16 14 C 0.08 3.01 4.81 86.37 0.42 3.43 16 15 C 0.08 2.35 4.07 87.11 0.35 2.70 16 16 N -0.52 -15.32 4.62 -915.33 -4.23 -19.55 16 17 C 0.09 2.32 5.31 85.56 0.45 2.77 16 18 C -0.12 -2.68 4.32 -19.87 -0.09 -2.77 16 19 C -0.12 -2.21 8.33 22.27 0.19 -2.02 16 20 C -0.13 -2.07 10.05 22.27 0.22 -1.84 16 21 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 22 C -0.13 -2.35 10.05 22.27 0.22 -2.12 16 23 C -0.13 -2.67 8.55 22.27 0.19 -2.48 16 24 C 0.08 1.96 2.86 83.96 0.24 2.20 16 25 C -0.09 -2.38 2.59 -12.48 -0.03 -2.41 16 26 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 27 C -0.13 -2.70 9.02 71.98 0.65 -2.05 16 28 C 0.08 2.42 3.71 87.22 0.32 2.75 16 29 H 0.06 1.88 7.21 -2.39 -0.02 1.87 16 30 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 31 H 0.05 1.69 6.23 -2.39 -0.01 1.67 16 32 H 0.00 -0.23 6.32 -2.39 -0.02 -0.25 16 33 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 34 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 35 H 0.03 1.04 5.85 -2.39 -0.01 1.03 16 36 H 0.04 2.01 6.78 -2.38 -0.02 1.99 16 37 H 0.07 2.03 5.99 -2.39 -0.01 2.02 16 38 H 0.03 0.98 6.55 -2.39 -0.02 0.96 16 39 H 0.07 1.94 8.00 -2.38 -0.02 1.92 16 40 H 0.09 2.02 7.91 -2.39 -0.02 2.00 16 41 H 0.13 2.11 7.22 -2.91 -0.02 2.08 16 42 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 43 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 44 H 0.13 1.94 8.06 -2.91 -0.02 1.91 16 45 H 0.12 2.49 7.39 -2.91 -0.02 2.47 16 46 H 0.03 0.82 6.77 -2.39 -0.02 0.80 16 47 H 0.08 1.66 7.00 -2.39 -0.02 1.64 16 48 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.06 1.15 8.09 -2.39 -0.02 1.13 16 50 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 51 H 0.03 0.85 6.96 -2.38 -0.02 0.84 16 52 H 0.06 1.90 7.10 -2.39 -0.02 1.89 16 Total: -1.00 -67.27 385.80 0.50 -66.77 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.87 Total: 16.82 kcal Atomic # 6 Polarization: -35.56 SS G_CDS: 4.90 Total: -30.66 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -7.29 Total: -101.87 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.95 kcal Total: -67.27 0.50 -66.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411800938.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.978 kcal (2) G-P(sol) polarization free energy of solvation -67.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds