Wall clock time and date at job start Tue Mar 31 2020 11:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47438 * 2 1 4 4 C 1.53001 * 109.47204 * 240.00571 * 2 1 3 5 5 C 1.50699 * 109.47510 * 65.47882 * 4 2 1 6 6 H 1.08002 * 119.99366 * 5.07306 * 5 4 2 7 7 C 1.37870 * 120.00191 * 185.07352 * 5 4 2 8 8 N 1.31517 * 120.00159 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00019 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47404 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47159 * 120.00131 * 9 7 5 12 12 H 1.48504 * 109.47024 * 239.99863 * 9 7 5 13 13 N 1.46898 * 109.46984 * 120.00323 * 2 1 3 14 14 C 1.40021 * 111.00093 * 60.86577 * 13 2 1 15 15 C 1.54202 * 112.07882 * 188.09890 * 14 13 2 16 16 N 1.44577 * 108.85199 * 281.19077 * 15 14 13 17 17 C 1.46897 * 110.99744 * 220.35268 * 16 15 14 18 18 C 1.50704 * 109.47381 * 66.04450 * 17 16 15 19 19 C 1.38231 * 120.00059 * 269.72829 * 18 17 16 20 20 C 1.38239 * 119.99838 * 179.76621 * 19 18 17 21 21 C 1.38236 * 119.99752 * 0.50710 * 20 19 18 22 22 C 1.38238 * 120.00121 * 359.74118 * 21 20 19 23 23 C 1.38232 * 119.99883 * 0.02562 * 22 21 20 24 24 C 1.48060 * 113.86001 * 94.22847 * 16 15 14 25 25 C 1.53699 * 112.46969 * 318.31781 * 24 16 15 26 26 H 1.08999 * 108.95719 * 79.22721 * 25 24 16 27 27 C 1.53002 * 108.88532 * 197.92549 * 25 24 16 28 28 C 1.47911 * 111.00075 * 188.83589 * 13 2 1 29 29 H 1.09008 * 109.47156 * 59.99459 * 1 2 3 30 30 H 1.08996 * 109.47652 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47032 * 300.00164 * 1 2 3 32 32 H 1.09002 * 109.47250 * 185.48703 * 4 2 1 33 33 H 1.09002 * 109.46839 * 305.47711 * 4 2 1 34 34 H 0.96999 * 120.00432 * 180.02562 * 8 7 5 35 35 H 1.08997 * 108.95632 * 67.42950 * 14 13 2 36 36 H 1.08998 * 108.95204 * 308.77060 * 14 13 2 37 37 H 1.09003 * 109.57623 * 41.00531 * 15 14 13 38 38 H 1.09001 * 109.56839 * 161.37802 * 15 14 13 39 39 H 1.08999 * 109.47221 * 186.05108 * 17 16 15 40 40 H 1.09008 * 109.47332 * 306.04408 * 17 16 15 41 41 H 1.07992 * 120.00205 * 359.97438 * 19 18 17 42 42 H 1.07998 * 120.00169 * 180.22725 * 20 19 18 43 43 H 1.07996 * 119.99954 * 179.72926 * 21 20 19 44 44 H 1.07999 * 120.00218 * 179.97438 * 22 21 20 45 45 H 1.08005 * 119.99644 * 179.97438 * 23 22 21 46 46 H 1.08995 * 108.88052 * 197.54560 * 24 16 15 47 47 H 1.09007 * 108.80203 * 79.03488 * 24 16 15 48 48 H 1.08995 * 109.47567 * 182.54016 * 27 25 24 49 49 H 1.09004 * 109.47139 * 302.54325 * 27 25 24 50 50 H 1.09001 * 109.47130 * 62.53579 * 27 25 24 51 51 H 1.08993 * 109.63464 * 273.48353 * 28 13 2 52 52 H 1.09004 * 109.62712 * 34.08093 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6515 0.0633 -2.4760 6 1 1.1689 1.0239 -2.3722 7 6 1.9122 -0.4453 -3.7307 8 7 2.5003 -1.6148 -3.8571 9 14 1.4313 0.5275 -5.2512 10 1 0.7896 1.8022 -4.8409 11 1 2.6446 0.8200 -6.0559 12 1 0.4769 -0.2669 -6.0656 13 7 2.0196 -0.6926 1.1994 14 6 1.5868 -2.0240 1.2218 15 6 1.9148 -2.7176 2.5594 16 7 3.3099 -3.0970 2.5592 17 6 3.4948 -4.4236 3.1622 18 6 2.8396 -5.4662 2.2933 19 6 1.5189 -5.8139 2.5076 20 6 0.9165 -6.7667 1.7074 21 6 1.6379 -7.3793 0.6998 22 6 2.9601 -7.0353 0.4889 23 6 3.5610 -6.0790 1.2860 24 6 4.2023 -2.0982 3.1903 25 6 3.8352 -0.6562 2.8053 26 1 2.9825 -0.3359 3.4040 27 6 5.0257 0.2558 3.1090 28 6 3.4827 -0.5314 1.3444 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.1256 -0.8070 -1.2016 33 1 1.5987 -1.7166 -1.2998 34 1 2.6840 -1.9725 -4.7398 35 1 2.0731 -2.5681 0.4122 36 1 0.5084 -2.0484 1.0652 37 1 1.7233 -2.0305 3.3837 38 1 1.2945 -3.6069 2.6713 39 1 4.5599 -4.6388 3.2475 40 1 3.0407 -4.4389 4.1531 41 1 0.9568 -5.3387 3.2978 42 1 -0.1163 -7.0357 1.8724 43 1 1.1686 -8.1269 0.0776 44 1 3.5238 -7.5142 -0.2980 45 1 4.5941 -5.8106 1.1214 46 1 5.2283 -2.2959 2.8800 47 1 4.1355 -2.2021 4.2733 48 1 4.7599 1.2881 2.8816 49 1 5.2878 0.1719 4.1637 50 1 5.8775 -0.0432 2.4981 51 1 3.9948 -1.3079 0.7764 52 1 3.7809 0.4511 0.9784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411800940.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:05 Heat of formation + Delta-G solvation = 33.105373 kcal Electronic energy + Delta-G solvation = -27942.251549 eV Core-core repulsion = 24520.319143 eV Total energy + Delta-G solvation = -3421.932407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.88637 -38.84202 -36.57242 -34.47779 -32.88473 -31.51439 -30.83486 -30.61462 -28.20467 -27.02355 -26.39851 -25.16357 -23.95863 -22.90350 -22.51772 -21.38175 -20.68372 -19.30450 -18.45581 -16.78383 -16.47241 -15.78725 -15.71424 -15.23248 -15.09345 -14.80856 -14.48517 -14.40762 -13.83360 -13.36713 -13.23188 -13.04545 -12.93737 -12.71644 -12.52510 -12.30698 -12.14213 -12.03833 -11.91432 -11.68447 -11.33473 -11.13425 -11.01396 -10.89581 -10.82553 -10.71476 -10.56815 -10.52548 -10.30014 -10.14773 -10.07406 -9.67415 -9.48306 -8.99624 -8.78753 -8.66793 -8.29866 -7.97500 -7.22420 -5.94116 -3.96210 1.42340 1.51177 3.33025 3.40733 3.44523 3.73753 4.24916 4.48370 4.64530 4.80383 4.88131 5.01461 5.08688 5.17470 5.19551 5.28371 5.35604 5.40982 5.48323 5.56727 5.60217 5.65128 5.67494 5.75433 5.82567 5.89503 5.94026 6.02655 6.08151 6.12440 6.13022 6.16017 6.32221 6.33119 6.40269 6.45564 6.51999 6.53538 6.61035 6.69718 6.74109 6.78334 6.91293 7.08381 7.09478 7.12979 7.25781 7.42132 7.70903 7.78359 7.87671 8.10615 8.25847 8.52248 9.10997 9.66953 11.16617 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009854 B = 0.004558 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.824359 B = 6140.899625 C = 7873.399381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.086 3.914 3 H 0.065 0.935 4 C 0.001 3.999 5 C -0.512 4.512 6 H 0.055 0.945 7 C 0.057 3.943 8 N -0.893 5.893 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.552 5.552 14 C 0.075 3.925 15 C 0.058 3.942 16 N -0.544 5.544 17 C 0.100 3.900 18 C -0.074 4.074 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.095 4.095 24 C 0.073 3.927 25 C -0.091 4.091 26 H 0.076 0.924 27 C -0.142 4.142 28 C 0.078 3.922 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.011 0.989 33 H 0.022 0.978 34 H 0.258 0.742 35 H 0.040 0.960 36 H 0.068 0.932 37 H 0.043 0.957 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.068 0.932 47 H 0.026 0.974 48 H 0.058 0.942 49 H 0.048 0.952 50 H 0.054 0.946 51 H 0.050 0.950 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.719 -7.446 16.514 18.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.020 4.020 3 H 0.083 0.917 4 C -0.037 4.037 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.533 5.533 9 Si 0.715 3.285 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.275 5.275 14 C -0.056 4.056 15 C -0.070 4.070 16 N -0.268 5.268 17 C -0.027 4.027 18 C -0.075 4.075 19 C -0.134 4.134 20 C -0.139 4.139 21 C -0.140 4.140 22 C -0.137 4.137 23 C -0.114 4.114 24 C -0.054 4.054 25 C -0.110 4.110 26 H 0.094 0.906 27 C -0.200 4.200 28 C -0.050 4.050 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.029 0.971 33 H 0.040 0.960 34 H 0.068 0.932 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.090 0.910 39 H 0.096 0.904 40 H 0.055 0.945 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.087 0.913 47 H 0.044 0.956 48 H 0.077 0.923 49 H 0.068 0.932 50 H 0.074 0.926 51 H 0.068 0.932 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.709 -7.376 16.330 18.000 hybrid contribution -0.120 0.081 -0.975 0.986 sum 1.589 -7.295 15.355 17.073 Atomic orbital electron populations 1.21759 0.95732 1.00878 1.00358 1.21805 0.94612 0.97283 0.88336 0.91677 1.19642 0.96084 0.96314 0.91659 1.21211 1.38631 1.04418 0.90870 0.92637 1.25008 0.95387 0.94955 0.99030 1.69991 1.42561 1.17729 1.22981 0.86613 0.78165 0.80248 0.83438 1.19746 1.21146 1.21135 1.59609 1.11738 1.15242 1.40907 1.20919 0.99715 0.89144 0.95804 1.22140 0.87722 0.98971 0.98201 1.60701 1.07881 1.01115 1.57126 1.20957 1.00124 0.87742 0.93859 1.19720 0.94109 0.96533 0.97113 1.21005 0.94456 0.97846 1.00068 1.21067 0.99611 0.97154 0.96116 1.21121 0.94620 1.00223 0.97994 1.21152 0.95303 0.97996 0.99208 1.20997 1.00149 0.95680 0.94557 1.22427 0.96467 0.91263 0.95254 1.21048 0.98274 0.93196 0.98464 0.90593 1.21822 0.97945 0.99558 1.00680 1.21661 0.88176 1.01031 0.94089 0.91746 0.93534 0.94367 0.97085 0.96005 0.93234 0.94194 0.91383 0.93823 0.91000 0.90387 0.94472 0.86487 0.86349 0.86377 0.86194 0.86134 0.91315 0.95575 0.92288 0.93242 0.92650 0.93190 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.77 37.16 0.33 -2.22 16 2 C 0.09 1.83 2.29 -67.72 -0.16 1.67 16 3 H 0.06 1.40 7.84 -51.93 -0.41 1.00 16 4 C 0.00 0.03 3.73 -27.88 -0.10 -0.07 16 5 C -0.51 -14.44 8.31 -34.44 -0.29 -14.73 16 6 H 0.06 1.52 7.29 -52.49 -0.38 1.14 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.85 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 N -0.55 -10.15 4.05 -231.75 -0.94 -11.09 16 14 C 0.07 1.35 4.33 -6.75 -0.03 1.33 16 15 C 0.06 0.85 5.16 -4.44 -0.02 0.83 16 16 N -0.54 -7.64 3.94 -235.75 -0.93 -8.57 16 17 C 0.10 1.20 5.04 -4.98 -0.03 1.17 16 18 C -0.07 -0.96 5.01 -104.62 -0.52 -1.48 16 19 C -0.12 -1.41 8.12 -39.58 -0.32 -1.73 16 20 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 21 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 22 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 23 C -0.10 -1.27 9.70 -39.58 -0.38 -1.65 16 24 C 0.07 0.92 4.79 -2.82 -0.01 0.91 16 25 C -0.09 -1.23 2.25 -91.36 -0.21 -1.44 16 26 H 0.08 1.09 7.23 -51.93 -0.38 0.71 16 27 C -0.14 -1.61 8.81 37.16 0.33 -1.29 16 28 C 0.08 1.35 3.97 -4.37 -0.02 1.33 16 29 H 0.06 1.33 7.09 -51.92 -0.37 0.96 16 30 H 0.05 0.91 6.24 -51.93 -0.32 0.58 16 31 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.01 0.31 7.09 -51.93 -0.37 -0.06 16 33 H 0.02 0.62 6.88 -51.93 -0.36 0.26 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.04 0.88 6.61 -51.93 -0.34 0.54 16 36 H 0.07 1.25 5.71 -51.93 -0.30 0.96 16 37 H 0.04 0.63 6.93 -51.93 -0.36 0.27 16 38 H 0.07 0.99 4.52 -51.93 -0.23 0.76 16 39 H 0.08 0.85 7.98 -51.93 -0.41 0.43 16 40 H 0.04 0.40 8.06 -51.92 -0.42 -0.01 16 41 H 0.12 1.25 7.15 -52.49 -0.38 0.87 16 42 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 43 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 45 H 0.12 1.50 8.06 -52.48 -0.42 1.07 16 46 H 0.07 0.85 7.97 -51.93 -0.41 0.43 16 47 H 0.03 0.30 8.03 -51.93 -0.42 -0.12 16 48 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 49 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.05 0.99 7.21 -51.93 -0.37 0.62 16 52 H 0.07 1.17 7.24 -51.93 -0.38 0.80 16 LS Contribution 388.14 15.07 5.85 5.85 Total: -1.00 -30.56 388.14 -12.15 -42.71 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -9.12 Total: 2.15 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -2.73 Total: -21.43 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -1.13 Total: -46.13 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.56 -12.15 -42.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411800940.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.817 kcal (2) G-P(sol) polarization free energy of solvation -30.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds