Wall clock time and date at job start Tue Mar 31 2020 11:31:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47053 * 2 1 4 4 C 1.53005 * 109.46788 * 119.99423 * 2 1 3 5 5 C 1.50698 * 109.46931 * 183.75496 * 4 2 1 6 6 H 1.08001 * 120.00106 * 5.01612 * 5 4 2 7 7 C 1.37878 * 119.99953 * 185.01535 * 5 4 2 8 8 N 1.31516 * 119.99986 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00029 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47016 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47102 * 119.99689 * 9 7 5 12 12 H 1.48500 * 109.47270 * 239.99752 * 9 7 5 13 13 N 1.46901 * 109.47339 * 239.99442 * 2 1 3 14 14 C 1.47693 * 110.99684 * 77.40842 * 13 2 1 15 15 C 1.50778 * 108.09176 * 151.98930 * 14 13 2 16 16 N 1.47750 * 111.91437 * 94.60963 * 15 14 13 17 17 C 1.46901 * 110.99345 * 84.94315 * 16 15 14 18 18 C 1.50696 * 109.47371 * 62.40169 * 17 16 15 19 19 C 1.38230 * 119.99791 * 269.72224 * 18 17 16 20 20 C 1.38239 * 119.99970 * 179.78760 * 19 18 17 21 21 C 1.38231 * 119.99954 * 0.44266 * 20 19 18 22 22 C 1.38239 * 120.00053 * 359.81186 * 21 20 19 23 23 C 1.38236 * 120.00071 * 89.99979 * 18 17 16 24 24 C 1.48067 * 113.78897 * 318.87940 * 16 15 14 25 25 C 1.50748 * 112.93481 * 318.27706 * 24 16 15 26 26 H 1.08992 * 109.56076 * 332.81554 * 25 24 16 27 27 C 1.52998 * 109.55995 * 212.49065 * 25 24 16 28 28 C 1.40086 * 110.99868 * 308.77058 * 13 2 1 29 29 H 1.08997 * 109.47053 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47308 * 300.00761 * 1 2 3 31 31 H 1.09004 * 109.46823 * 60.00243 * 1 2 3 32 32 H 1.08992 * 109.47236 * 303.75647 * 4 2 1 33 33 H 1.09002 * 109.47029 * 63.75911 * 4 2 1 34 34 H 0.96996 * 120.00075 * 179.97438 * 8 7 5 35 35 H 1.08991 * 109.73982 * 271.64009 * 14 13 2 36 36 H 1.09002 * 109.73492 * 32.34331 * 14 13 2 37 37 H 1.09001 * 108.99405 * 333.98449 * 15 14 13 38 38 H 1.08999 * 108.92969 * 215.19408 * 15 14 13 39 39 H 1.09003 * 109.46856 * 182.40269 * 17 16 15 40 40 H 1.08998 * 109.47355 * 302.39136 * 17 16 15 41 41 H 1.08000 * 120.00350 * 359.97438 * 19 18 17 42 42 H 1.08000 * 119.99756 * 180.27204 * 20 19 18 43 43 H 1.07999 * 120.00242 * 179.83221 * 21 20 19 44 44 H 1.07995 * 120.00191 * 179.97438 * 22 21 20 45 45 H 1.07995 * 119.99758 * 359.97438 * 23 18 17 46 46 H 1.09004 * 108.78527 * 197.39091 * 24 16 15 47 47 H 1.08994 * 108.79456 * 79.17171 * 24 16 15 48 48 H 1.09001 * 109.46935 * 300.54377 * 27 25 24 49 49 H 1.08995 * 109.47312 * 60.53827 * 27 25 24 50 50 H 1.08996 * 109.47292 * 180.54682 * 27 25 24 51 51 H 1.08998 * 109.07158 * 308.66549 * 28 13 2 52 52 H 1.08999 * 109.07342 * 67.69344 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5441 -0.6411 1.2968 6 1 4.0774 -0.0593 0.5596 7 6 4.2393 -1.3105 2.2814 8 7 3.5899 -2.0185 3.1795 9 14 6.1037 -1.2107 2.3407 10 1 6.5893 -0.3566 1.2271 11 1 6.5270 -0.6228 3.6369 12 1 6.6770 -2.5738 2.2047 13 7 2.0197 -0.6926 -1.1994 14 6 1.9128 0.1731 -2.3912 15 6 2.9852 -0.2395 -3.3674 16 7 2.4805 -1.2050 -4.3654 17 6 1.8406 -0.5119 -5.4915 18 6 2.8579 0.3487 -6.1953 19 6 3.0444 1.6605 -5.8015 20 6 3.9807 2.4487 -6.4442 21 6 4.7241 1.9277 -7.4866 22 6 4.5339 0.6174 -7.8840 23 6 3.6006 -0.1720 -7.2384 24 6 1.5825 -2.2364 -3.7977 25 6 2.0642 -2.7697 -2.4725 26 1 3.1488 -2.6785 -2.4149 27 6 1.6635 -4.2399 -2.3358 28 6 1.4150 -1.9488 -1.3357 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6227 -0.2476 2.1380 33 1 1.7326 -1.7664 1.2164 34 1 4.0790 -2.4898 3.8720 35 1 0.9313 0.0499 -2.8487 36 1 2.0575 1.2146 -2.1038 37 1 3.8088 -0.6953 -2.8179 38 1 3.3520 0.6467 -3.8852 39 1 1.4404 -1.2466 -6.1903 40 1 1.0299 0.1144 -5.1193 41 1 2.4607 2.0688 -4.9897 42 1 4.1295 3.4723 -6.1335 43 1 5.4537 2.5443 -7.9905 44 1 5.1144 0.2105 -8.6987 45 1 3.4520 -1.1957 -7.5487 46 1 1.5083 -3.0641 -4.5032 47 1 0.5915 -1.8033 -3.6626 48 1 0.5789 -4.3283 -2.3986 49 1 2.1221 -4.8176 -3.1383 50 1 2.0039 -4.6213 -1.3732 51 1 1.5160 -2.4963 -0.3987 52 1 0.3562 -1.8124 -1.5560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411800942.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:07 Heat of formation + Delta-G solvation = 36.843629 kcal Electronic energy + Delta-G solvation = -27841.042670 eV Core-core repulsion = 24419.272367 eV Total energy + Delta-G solvation = -3421.770304 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.09932 -39.06490 -36.52374 -34.23915 -32.81910 -31.72762 -30.98427 -30.64330 -28.19902 -27.31502 -26.39834 -25.37948 -24.03829 -22.92026 -22.61519 -21.58369 -20.32656 -19.32708 -18.81209 -16.80281 -16.17521 -16.05555 -15.79687 -15.46238 -15.23413 -14.85220 -14.62830 -14.22246 -14.04902 -13.50270 -13.25261 -13.05755 -12.90078 -12.72937 -12.56117 -12.38951 -12.17166 -12.10468 -11.85308 -11.67841 -11.62827 -11.37133 -11.13513 -11.06603 -10.91361 -10.80981 -10.65334 -10.53251 -10.44115 -10.11691 -10.02534 -9.90732 -9.16002 -8.95530 -8.91860 -8.82021 -8.23673 -8.08921 -7.29296 -5.86514 -3.83716 1.25618 1.33329 3.40063 3.47754 3.53317 3.61247 4.17326 4.52989 4.59316 4.68625 4.77216 4.92119 5.02069 5.09224 5.15166 5.25103 5.31244 5.42001 5.50453 5.54877 5.55877 5.58133 5.61265 5.66585 5.77136 5.82727 5.90314 5.91951 5.93796 5.94108 5.97221 5.99982 6.07221 6.16837 6.23492 6.37075 6.39810 6.42828 6.45685 6.56113 6.60516 6.64919 6.69954 6.76816 6.91999 7.01587 7.25403 7.28121 7.58988 7.73830 8.06415 8.11834 8.24307 8.60303 9.21664 9.77805 11.25587 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012666 B = 0.003787 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.190216 B = 7392.226410 C = 8130.184669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.092 3.908 3 H 0.067 0.933 4 C 0.029 3.971 5 C -0.485 4.485 6 H 0.059 0.941 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.522 5.522 14 C 0.038 3.962 15 C 0.050 3.950 16 N -0.540 5.540 17 C 0.094 3.906 18 C -0.071 4.071 19 C -0.113 4.113 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.123 4.123 23 C -0.100 4.100 24 C 0.070 3.930 25 C -0.095 4.095 26 H 0.092 0.908 27 C -0.138 4.138 28 C 0.080 3.920 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.034 0.966 32 H 0.014 0.986 33 H 0.022 0.978 34 H 0.256 0.744 35 H 0.025 0.975 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.038 0.962 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.067 0.933 47 H 0.026 0.974 48 H 0.048 0.952 49 H 0.053 0.947 50 H 0.062 0.938 51 H 0.087 0.913 52 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.387 3.612 -20.514 21.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.016 4.016 3 H 0.085 0.915 4 C -0.008 4.008 5 C -0.524 4.524 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.546 5.546 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.245 5.245 14 C -0.091 4.091 15 C -0.078 4.078 16 N -0.264 5.264 17 C -0.033 4.033 18 C -0.071 4.071 19 C -0.131 4.131 20 C -0.139 4.139 21 C -0.142 4.142 22 C -0.141 4.141 23 C -0.118 4.118 24 C -0.057 4.057 25 C -0.114 4.114 26 H 0.110 0.890 27 C -0.196 4.196 28 C -0.049 4.049 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.032 0.968 33 H 0.040 0.960 34 H 0.066 0.934 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.085 0.915 47 H 0.044 0.956 48 H 0.067 0.933 49 H 0.072 0.928 50 H 0.081 0.919 51 H 0.105 0.895 52 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -3.511 3.163 -20.476 21.015 hybrid contribution -0.510 0.576 0.369 0.854 sum -4.021 3.739 -20.107 20.843 Atomic orbital electron populations 1.22509 0.99882 1.01265 1.00354 1.21922 0.89849 0.98015 0.91771 0.91516 1.19215 0.96433 0.95473 0.89638 1.21158 0.91509 1.28733 1.10950 0.92246 1.24979 0.97916 0.95883 0.96019 1.69970 1.35016 1.33076 1.16500 0.86603 0.86619 0.77621 0.77545 1.19783 1.21492 1.21331 1.59001 1.60732 1.02630 1.02129 1.22324 0.97186 0.97325 0.92306 1.22205 0.98337 0.95335 0.91886 1.62160 1.39364 1.15099 1.09768 1.20979 0.93338 0.95716 0.93304 1.19762 0.97679 0.93841 0.95853 1.21092 0.98736 0.93841 0.99455 1.21116 0.96539 0.99830 0.96434 1.21122 0.99717 0.95765 0.97627 1.21131 0.98517 0.94319 1.00154 1.21003 0.95681 0.99458 0.95691 1.21913 0.93547 0.93846 0.96346 1.21118 1.02770 0.94517 0.93029 0.88994 1.21727 1.00631 0.95141 1.02109 1.21118 0.93491 0.90864 0.99452 0.92823 0.92618 0.94645 0.96806 0.95954 0.93436 0.95657 0.91181 0.88883 0.90828 0.90449 0.94390 0.86225 0.86208 0.86392 0.86296 0.86111 0.91484 0.95591 0.93322 0.92833 0.91916 0.89489 0.97571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.13 8.42 37.16 0.31 -2.81 16 2 C 0.09 1.84 2.22 -67.71 -0.15 1.69 16 3 H 0.07 1.36 7.60 -51.93 -0.39 0.97 16 4 C 0.03 0.74 4.38 -27.88 -0.12 0.62 16 5 C -0.48 -13.46 8.80 -34.44 -0.30 -13.76 16 6 H 0.06 1.66 7.75 -52.49 -0.41 1.25 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 9 Si 0.89 22.14 29.54 -169.99 -5.02 17.12 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 N -0.52 -9.70 3.58 -231.68 -0.83 -10.53 16 14 C 0.04 0.58 4.77 -4.50 -0.02 0.56 16 15 C 0.05 0.74 5.09 -4.47 -0.02 0.72 16 16 N -0.54 -7.27 4.76 -237.13 -1.13 -8.40 16 17 C 0.09 1.08 5.02 -4.98 -0.02 1.05 16 18 C -0.07 -0.81 4.87 -104.63 -0.51 -1.31 16 19 C -0.11 -1.24 7.74 -39.58 -0.31 -1.55 16 20 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 21 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 22 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 23 C -0.10 -1.07 9.70 -39.58 -0.38 -1.45 16 24 C 0.07 0.94 4.53 -4.31 -0.02 0.92 16 25 C -0.10 -1.46 2.47 -90.95 -0.22 -1.68 16 26 H 0.09 1.63 7.19 -51.93 -0.37 1.26 16 27 C -0.14 -1.84 8.91 37.16 0.33 -1.51 16 28 C 0.08 1.41 3.39 -6.55 -0.02 1.39 16 29 H 0.05 0.93 6.52 -51.93 -0.34 0.59 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.03 0.55 7.78 -51.93 -0.40 0.14 16 32 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.60 6.31 -51.93 -0.33 0.27 16 34 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.03 0.39 6.25 -51.93 -0.32 0.06 16 36 H 0.07 1.07 7.51 -51.93 -0.39 0.68 16 37 H 0.09 1.66 7.20 -51.93 -0.37 1.28 16 38 H 0.07 1.03 4.62 -51.93 -0.24 0.79 16 39 H 0.08 0.80 8.03 -51.93 -0.42 0.38 16 40 H 0.04 0.44 7.60 -51.93 -0.39 0.04 16 41 H 0.12 1.25 7.65 -52.49 -0.40 0.85 16 42 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 45 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 46 H 0.07 0.82 7.69 -51.93 -0.40 0.42 16 47 H 0.03 0.36 6.41 -51.93 -0.33 0.02 16 48 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 50 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 51 H 0.09 1.79 5.91 -51.93 -0.31 1.48 16 52 H 0.01 0.11 6.00 -51.93 -0.31 -0.20 16 LS Contribution 387.61 15.07 5.84 5.84 Total: -1.00 -29.71 387.61 -12.23 -41.95 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -9.07 Total: 1.06 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -2.76 Total: -20.59 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -1.22 Total: -45.38 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.71 -12.23 -41.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411800942.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.789 kcal (2) G-P(sol) polarization free energy of solvation -29.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds