Wall clock time and date at job start Tue Mar 31 2020 11:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47053 * 2 1 4 4 C 1.53005 * 109.46788 * 119.99423 * 2 1 3 5 5 C 1.50698 * 109.46931 * 183.75496 * 4 2 1 6 6 H 1.08001 * 120.00106 * 5.01612 * 5 4 2 7 7 C 1.37878 * 119.99953 * 185.01535 * 5 4 2 8 8 N 1.31516 * 119.99986 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00029 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47016 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47102 * 119.99689 * 9 7 5 12 12 H 1.48500 * 109.47270 * 239.99752 * 9 7 5 13 13 N 1.46901 * 109.47339 * 239.99442 * 2 1 3 14 14 C 1.47693 * 110.99684 * 77.40842 * 13 2 1 15 15 C 1.50778 * 108.09176 * 151.98930 * 14 13 2 16 16 N 1.47750 * 111.91437 * 94.60963 * 15 14 13 17 17 C 1.46901 * 110.99345 * 84.94315 * 16 15 14 18 18 C 1.50696 * 109.47371 * 62.40169 * 17 16 15 19 19 C 1.38230 * 119.99791 * 269.72224 * 18 17 16 20 20 C 1.38239 * 119.99970 * 179.78760 * 19 18 17 21 21 C 1.38231 * 119.99954 * 0.44266 * 20 19 18 22 22 C 1.38239 * 120.00053 * 359.81186 * 21 20 19 23 23 C 1.38236 * 120.00071 * 89.99979 * 18 17 16 24 24 C 1.48067 * 113.78897 * 318.87940 * 16 15 14 25 25 C 1.50748 * 112.93481 * 318.27706 * 24 16 15 26 26 H 1.08992 * 109.56076 * 332.81554 * 25 24 16 27 27 C 1.52998 * 109.55995 * 212.49065 * 25 24 16 28 28 C 1.40086 * 110.99868 * 308.77058 * 13 2 1 29 29 H 1.08997 * 109.47053 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47308 * 300.00761 * 1 2 3 31 31 H 1.09004 * 109.46823 * 60.00243 * 1 2 3 32 32 H 1.08992 * 109.47236 * 303.75647 * 4 2 1 33 33 H 1.09002 * 109.47029 * 63.75911 * 4 2 1 34 34 H 0.96996 * 120.00075 * 179.97438 * 8 7 5 35 35 H 1.08991 * 109.73982 * 271.64009 * 14 13 2 36 36 H 1.09002 * 109.73492 * 32.34331 * 14 13 2 37 37 H 1.09001 * 108.99405 * 333.98449 * 15 14 13 38 38 H 1.08999 * 108.92969 * 215.19408 * 15 14 13 39 39 H 1.09003 * 109.46856 * 182.40269 * 17 16 15 40 40 H 1.08998 * 109.47355 * 302.39136 * 17 16 15 41 41 H 1.08000 * 120.00350 * 359.97438 * 19 18 17 42 42 H 1.08000 * 119.99756 * 180.27204 * 20 19 18 43 43 H 1.07999 * 120.00242 * 179.83221 * 21 20 19 44 44 H 1.07995 * 120.00191 * 179.97438 * 22 21 20 45 45 H 1.07995 * 119.99758 * 359.97438 * 23 18 17 46 46 H 1.09004 * 108.78527 * 197.39091 * 24 16 15 47 47 H 1.08994 * 108.79456 * 79.17171 * 24 16 15 48 48 H 1.09001 * 109.46935 * 300.54377 * 27 25 24 49 49 H 1.08995 * 109.47312 * 60.53827 * 27 25 24 50 50 H 1.08996 * 109.47292 * 180.54682 * 27 25 24 51 51 H 1.08998 * 109.07158 * 308.66549 * 28 13 2 52 52 H 1.08999 * 109.07342 * 67.69344 * 28 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 3.5441 -0.6411 1.2968 6 1 4.0774 -0.0593 0.5596 7 6 4.2393 -1.3105 2.2814 8 7 3.5899 -2.0185 3.1795 9 14 6.1037 -1.2107 2.3407 10 1 6.5893 -0.3566 1.2271 11 1 6.5270 -0.6228 3.6369 12 1 6.6770 -2.5738 2.2047 13 7 2.0197 -0.6926 -1.1994 14 6 1.9128 0.1731 -2.3912 15 6 2.9852 -0.2395 -3.3674 16 7 2.4805 -1.2050 -4.3654 17 6 1.8406 -0.5119 -5.4915 18 6 2.8579 0.3487 -6.1953 19 6 3.0444 1.6605 -5.8015 20 6 3.9807 2.4487 -6.4442 21 6 4.7241 1.9277 -7.4866 22 6 4.5339 0.6174 -7.8840 23 6 3.6006 -0.1720 -7.2384 24 6 1.5825 -2.2364 -3.7977 25 6 2.0642 -2.7697 -2.4725 26 1 3.1488 -2.6785 -2.4149 27 6 1.6635 -4.2399 -2.3358 28 6 1.4150 -1.9488 -1.3357 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.6227 -0.2476 2.1380 33 1 1.7326 -1.7664 1.2164 34 1 4.0790 -2.4898 3.8720 35 1 0.9313 0.0499 -2.8487 36 1 2.0575 1.2146 -2.1038 37 1 3.8088 -0.6953 -2.8179 38 1 3.3520 0.6467 -3.8852 39 1 1.4404 -1.2466 -6.1903 40 1 1.0299 0.1144 -5.1193 41 1 2.4607 2.0688 -4.9897 42 1 4.1295 3.4723 -6.1335 43 1 5.4537 2.5443 -7.9905 44 1 5.1144 0.2105 -8.6987 45 1 3.4520 -1.1957 -7.5487 46 1 1.5083 -3.0641 -4.5032 47 1 0.5915 -1.8033 -3.6626 48 1 0.5789 -4.3283 -2.3986 49 1 2.1221 -4.8176 -3.1383 50 1 2.0039 -4.6213 -1.3732 51 1 1.5160 -2.4963 -0.3987 52 1 0.3562 -1.8124 -1.5560 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411800942.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:06 Heat of formation + Delta-G solvation = 20.775984 kcal Electronic energy + Delta-G solvation = -27841.739416 eV Core-core repulsion = 24419.272367 eV Total energy + Delta-G solvation = -3422.467049 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.28015 -40.01727 -37.80043 -35.47580 -34.78895 -32.98104 -31.92836 -31.73125 -29.53091 -29.13222 -27.35694 -26.68965 -25.48075 -24.58579 -23.40438 -22.67849 -21.50035 -20.50134 -20.34865 -18.34976 -17.58570 -17.22486 -17.03648 -16.70099 -16.41489 -16.19845 -15.77438 -15.71501 -15.24488 -14.68135 -14.37913 -14.23275 -14.12851 -13.86327 -13.81299 -13.67066 -13.48779 -13.39513 -13.28564 -13.16894 -12.81988 -12.81495 -12.52953 -12.40810 -12.33991 -12.17362 -12.08790 -11.86053 -11.76467 -11.58641 -11.43035 -11.37262 -11.05884 -10.90799 -10.46983 -9.72080 -9.61942 -9.20454 -8.69801 -8.08954 -6.12695 0.48150 0.57176 1.40091 1.41869 1.54307 2.47745 2.75886 3.08128 3.22357 3.28584 3.79158 3.89034 3.97048 4.01516 4.11347 4.20832 4.22297 4.27518 4.33756 4.40434 4.41296 4.44681 4.49460 4.55958 4.60002 4.65645 4.72389 4.74530 4.77958 4.82826 4.86545 4.87716 4.95771 5.05160 5.16991 5.17610 5.19745 5.22408 5.23470 5.35116 5.39731 5.47319 5.53424 5.62531 5.68724 5.69468 5.76833 5.91103 6.14226 6.18408 6.23298 6.35878 6.55969 6.78997 7.00621 7.52692 9.03381 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012666 B = 0.003787 C = 0.003443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.190216 B = 7392.226410 C = 8130.184669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.099 3.901 3 H 0.064 0.936 4 C 0.037 3.963 5 C -0.492 4.492 6 H 0.055 0.945 7 C -0.003 4.003 8 N -0.940 5.940 9 Si 0.952 3.048 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.285 1.285 13 N -0.541 5.541 14 C 0.046 3.954 15 C 0.061 3.939 16 N -0.544 5.544 17 C 0.098 3.902 18 C -0.085 4.085 19 C -0.127 4.127 20 C -0.131 4.131 21 C -0.130 4.130 22 C -0.129 4.129 23 C -0.111 4.111 24 C 0.076 3.924 25 C -0.089 4.089 26 H 0.063 0.937 27 C -0.133 4.133 28 C 0.087 3.913 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.060 0.940 32 H -0.011 1.011 33 H -0.003 1.003 34 H 0.258 0.742 35 H 0.038 0.962 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.040 0.960 41 H 0.121 0.879 42 H 0.134 0.866 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.130 0.870 46 H 0.087 0.913 47 H 0.029 0.971 48 H 0.064 0.936 49 H 0.072 0.928 50 H 0.042 0.958 51 H 0.047 0.953 52 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 4.237 -23.149 23.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.008 4.008 3 H 0.082 0.918 4 C 0.000 4.000 5 C -0.530 4.530 6 H 0.073 0.927 7 C -0.198 4.198 8 N -0.583 5.583 9 Si 0.778 3.222 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.211 1.211 13 N -0.264 5.264 14 C -0.082 4.082 15 C -0.067 4.067 16 N -0.269 5.269 17 C -0.029 4.029 18 C -0.086 4.086 19 C -0.145 4.145 20 C -0.149 4.149 21 C -0.148 4.148 22 C -0.147 4.147 23 C -0.129 4.129 24 C -0.050 4.050 25 C -0.108 4.108 26 H 0.081 0.919 27 C -0.191 4.191 28 C -0.042 4.042 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.007 0.993 33 H 0.016 0.984 34 H 0.066 0.934 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.058 0.942 41 H 0.139 0.861 42 H 0.152 0.848 43 H 0.157 0.843 44 H 0.157 0.843 45 H 0.148 0.852 46 H 0.106 0.894 47 H 0.047 0.953 48 H 0.083 0.917 49 H 0.091 0.909 50 H 0.061 0.939 51 H 0.065 0.935 52 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -3.399 3.796 -23.131 23.686 hybrid contribution -0.531 0.399 1.159 1.336 sum -3.930 4.195 -21.972 22.712 Atomic orbital electron populations 1.22352 0.97401 1.01415 1.01673 1.21635 0.91799 0.96965 0.90443 0.91761 1.19059 0.95251 0.94365 0.91366 1.21449 0.92970 1.28125 1.10468 0.92655 1.25781 1.02550 0.95703 0.95805 1.70093 1.36806 1.34097 1.17268 0.85588 0.81125 0.77655 0.77801 1.19065 1.20794 1.21072 1.58889 1.61438 1.03363 1.02757 1.22307 0.98061 0.96818 0.91026 1.21988 0.97105 0.95732 0.91881 1.62129 1.40024 1.15013 1.09715 1.21004 0.93282 0.96013 0.92575 1.19834 0.98222 0.94060 0.96444 1.21228 0.99303 0.94097 0.99900 1.21386 0.96346 1.00598 0.96559 1.21449 0.99821 0.96085 0.97405 1.21440 0.98343 0.94413 1.00510 1.21216 0.95876 1.00131 0.95714 1.21838 0.93295 0.94469 0.95419 1.21034 1.00734 0.95536 0.93491 0.91888 1.21686 1.01776 0.93857 1.01752 1.21012 0.94343 0.90358 0.98505 0.93228 0.92392 0.92151 0.99319 0.98442 0.93367 0.94425 0.90818 0.92265 0.89737 0.88961 0.94210 0.86081 0.84769 0.84337 0.84307 0.85213 0.89446 0.95257 0.91717 0.90873 0.93921 0.93460 0.96458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.73 8.42 71.98 0.61 -5.12 16 2 C 0.10 4.05 2.22 44.92 0.10 4.15 16 3 H 0.06 2.63 7.60 -2.39 -0.02 2.61 16 4 C 0.04 1.93 4.38 29.85 0.13 2.06 16 5 C -0.49 -28.10 8.80 25.60 0.23 -27.88 16 6 H 0.06 3.15 7.75 -2.91 -0.02 3.12 16 7 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 8 N -0.94 -58.18 13.29 21.45 0.28 -57.90 16 9 Si 0.95 46.21 29.54 68.60 2.03 48.24 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 13 N -0.54 -20.29 3.58 -886.90 -3.18 -23.47 16 14 C 0.05 1.39 4.77 85.43 0.41 1.80 16 15 C 0.06 1.77 5.09 85.42 0.43 2.21 16 16 N -0.54 -13.76 4.76 -904.13 -4.30 -18.06 16 17 C 0.10 2.02 5.02 85.56 0.43 2.45 16 18 C -0.09 -1.78 4.87 -19.87 -0.10 -1.87 16 19 C -0.13 -2.60 7.74 22.27 0.17 -2.42 16 20 C -0.13 -2.42 10.05 22.27 0.22 -2.20 16 21 C -0.13 -2.21 10.05 22.27 0.22 -1.98 16 22 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 23 C -0.11 -2.14 9.70 22.27 0.22 -1.92 16 24 C 0.08 1.89 4.53 85.35 0.39 2.28 16 25 C -0.09 -2.69 2.47 -11.01 -0.03 -2.72 16 26 H 0.06 2.29 7.19 -2.39 -0.02 2.27 16 27 C -0.13 -3.45 8.91 71.98 0.64 -2.81 16 28 C 0.09 3.12 3.39 88.05 0.30 3.41 16 29 H 0.05 1.70 6.52 -2.39 -0.02 1.69 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.90 16 31 H 0.06 1.74 7.78 -2.38 -0.02 1.72 16 32 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 33 H 0.00 -0.15 6.31 -2.39 -0.02 -0.17 16 34 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.04 1.06 6.25 -2.39 -0.01 1.04 16 36 H 0.07 2.16 7.51 -2.39 -0.02 2.14 16 37 H 0.06 2.14 7.20 -2.39 -0.02 2.13 16 38 H 0.08 2.27 4.62 -2.39 -0.01 2.26 16 39 H 0.09 1.62 8.03 -2.39 -0.02 1.60 16 40 H 0.04 0.81 7.60 -2.39 -0.02 0.79 16 41 H 0.12 2.35 7.65 -2.91 -0.02 2.33 16 42 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 43 H 0.14 1.71 8.06 -2.91 -0.02 1.68 16 44 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 45 H 0.13 2.17 8.06 -2.91 -0.02 2.15 16 46 H 0.09 1.85 7.69 -2.39 -0.02 1.83 16 47 H 0.03 0.72 6.41 -2.39 -0.02 0.70 16 48 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.07 1.61 8.10 -2.39 -0.02 1.59 16 50 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.05 2.05 5.91 -2.39 -0.01 2.04 16 52 H 0.02 0.58 6.00 -2.39 -0.01 0.57 16 Total: -1.00 -65.53 387.61 0.76 -64.76 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.87 Total: 18.71 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 5.06 Total: -32.28 kcal Atomic # 7 Polarization: -92.24 SS G_CDS: -7.19 Total: -99.43 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -65.53 0.76 -64.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411800942.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.541 kcal (2) G-P(sol) polarization free energy of solvation -65.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds