Wall clock time and date at job start Tue Mar 31 2020 11:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46844 * 110.99868 * 2 1 4 4 C 1.53041 * 109.52102 * 185.83551 * 3 2 1 5 5 C 1.53120 * 109.27983 * 300.82028 * 4 3 2 6 6 H 1.08991 * 109.52259 * 297.74879 * 5 4 3 7 7 N 1.46899 * 109.57441 * 177.58900 * 5 4 3 8 8 C 1.46903 * 110.99805 * 85.28633 * 7 5 4 9 9 C 1.53001 * 109.46918 * 179.97438 * 8 7 5 10 10 C 1.52998 * 109.47446 * 299.99981 * 9 8 7 11 11 C 1.53001 * 109.47061 * 60.00145 * 9 8 7 12 12 C 1.50701 * 109.47275 * 179.97438 * 9 8 7 13 13 H 1.08007 * 119.99520 * 357.61459 * 12 9 8 14 14 C 1.37872 * 120.00383 * 177.60960 * 12 9 8 15 15 N 1.31516 * 120.00066 * 6.35100 * 14 12 9 16 16 Si 1.86802 * 120.00318 * 186.35045 * 14 12 9 17 17 H 1.48504 * 109.46775 * 84.97080 * 16 14 12 18 18 H 1.48492 * 109.47383 * 204.97122 * 16 14 12 19 19 H 1.48502 * 109.46840 * 324.97953 * 16 14 12 20 20 C 1.53117 * 109.16176 * 57.65417 * 5 4 3 21 21 C 1.46852 * 110.99710 * 124.20718 * 2 1 3 22 22 H 1.09004 * 109.46165 * 294.17554 * 21 2 1 23 23 C 1.50703 * 109.46223 * 54.14627 * 21 2 1 24 24 C 1.38230 * 120.00069 * 39.77545 * 23 21 2 25 25 C 1.38238 * 120.00054 * 179.78688 * 24 23 21 26 26 C 1.38234 * 119.99746 * 0.46669 * 25 24 23 27 27 C 1.38238 * 119.99876 * 359.76900 * 26 25 24 28 28 C 1.38229 * 120.00193 * 0.02562 * 27 26 25 29 29 H 1.09005 * 109.46898 * 56.04872 * 1 2 3 30 30 H 1.08998 * 109.47476 * 176.04923 * 1 2 3 31 31 H 1.08997 * 109.47499 * 296.05029 * 1 2 3 32 32 H 1.08998 * 109.46449 * 65.82038 * 3 2 1 33 33 H 1.08995 * 109.45812 * 305.84347 * 3 2 1 34 34 H 1.08998 * 109.50660 * 180.87874 * 4 3 2 35 35 H 1.09000 * 109.53395 * 60.78183 * 4 3 2 36 36 H 1.00899 * 111.00069 * 209.23858 * 7 5 4 37 37 H 1.08998 * 109.47315 * 299.99797 * 8 7 5 38 38 H 1.08999 * 109.47228 * 59.99952 * 8 7 5 39 39 H 1.09004 * 109.47000 * 65.10500 * 10 9 8 40 40 H 1.08995 * 109.47351 * 185.10754 * 10 9 8 41 41 H 1.09000 * 109.46948 * 305.11187 * 10 9 8 42 42 H 1.09004 * 109.47562 * 59.99859 * 11 9 8 43 43 H 1.09004 * 109.47511 * 180.02562 * 11 9 8 44 44 H 1.08999 * 109.47339 * 299.99934 * 11 9 8 45 45 H 0.96995 * 119.99956 * 180.02562 * 15 14 12 46 46 H 1.09000 * 109.50468 * 62.28154 * 20 5 4 47 47 H 1.08997 * 109.50562 * 182.40815 * 20 5 4 48 48 H 1.07997 * 120.00074 * 0.02562 * 24 23 21 49 49 H 1.08002 * 120.00030 * 180.25448 * 25 24 23 50 50 H 1.07998 * 119.99974 * 179.78375 * 26 25 24 51 51 H 1.08003 * 119.99959 * 179.97438 * 27 26 25 52 52 H 1.08004 * 119.99812 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3341 -0.1467 5 6 4.1187 0.5370 1.0145 6 1 3.8886 1.0354 1.9561 7 7 5.5757 0.4485 0.8491 8 6 6.2419 1.6318 1.4095 9 6 7.7546 1.5032 1.2194 10 6 8.2542 0.2485 1.9383 11 6 8.0739 1.3971 -0.2731 12 6 8.4381 2.7174 1.7936 13 1 7.8499 3.5199 2.2140 14 6 9.8140 2.8038 1.7825 15 7 10.5254 1.8888 1.1611 16 14 10.6680 4.2207 2.6502 17 1 10.8419 3.8885 4.0871 18 1 11.9978 4.4511 2.0309 19 1 9.8429 5.4488 2.5225 20 6 3.5181 -0.8715 1.0210 21 6 1.9952 -0.7708 1.1338 22 1 1.7323 -0.2707 2.0661 23 6 1.3981 -2.1544 1.1207 24 6 1.2253 -2.8213 -0.0777 25 6 0.6817 -4.0922 -0.0894 26 6 0.3020 -4.6924 1.0966 27 6 0.4703 -4.0235 2.2946 28 6 1.0178 -2.7543 2.3066 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3634 -1.0252 -0.0708 31 1 -0.3634 0.4513 0.9232 32 1 1.7323 1.8608 0.9375 33 1 1.5635 1.9255 -0.8331 34 1 3.9099 2.3511 -0.1310 35 1 3.7819 0.8571 -1.0905 36 1 5.9357 -0.3987 1.2623 37 1 5.8857 2.5258 0.8976 38 1 6.0148 1.7072 2.4729 39 1 7.8293 -0.6359 1.4633 40 1 9.3417 0.2051 1.8801 41 1 7.9472 0.2822 2.9837 42 1 7.7180 2.2910 -0.7854 43 1 9.1515 1.3050 -0.4086 44 1 7.5796 0.5191 -0.6889 45 1 11.4934 1.9494 1.1536 46 1 3.7812 -1.3836 0.0955 47 1 3.9097 -1.4302 1.8710 48 1 1.5186 -2.3509 -1.0046 49 1 0.5505 -4.6149 -1.0254 50 1 -0.1260 -5.6839 1.0872 51 1 0.1732 -4.4922 3.2211 52 1 1.1488 -2.2316 3.2426 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414163396.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:35 Heat of formation + Delta-G solvation = 9.843875 kcal Electronic energy + Delta-G solvation = -27154.579509 eV Core-core repulsion = 23731.638408 eV Total energy + Delta-G solvation = -3422.941101 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.12284 -39.39537 -38.27514 -35.96922 -33.53661 -33.48043 -31.75925 -31.31261 -29.98472 -27.50101 -27.30412 -27.13491 -25.30401 -24.46301 -23.67053 -23.20547 -21.54887 -20.61154 -20.21024 -18.02415 -17.69069 -16.99484 -16.60366 -16.44036 -16.27813 -15.89884 -15.77371 -15.39427 -14.98431 -14.92879 -14.48079 -14.44996 -14.13700 -14.02257 -13.83624 -13.58099 -13.49299 -13.21204 -13.04405 -13.04138 -12.63875 -12.56372 -12.48183 -12.30728 -12.20489 -12.18233 -12.05930 -11.86064 -11.81562 -11.64398 -11.27980 -11.25817 -10.85624 -10.60089 -10.32500 -9.75292 -9.55725 -9.30564 -9.15625 -7.96832 -6.13305 0.47017 0.56778 1.41920 1.43706 1.51608 2.46246 2.83097 2.96438 3.24565 3.38105 3.61037 3.91822 4.01093 4.10004 4.18283 4.25420 4.32959 4.33283 4.41180 4.46246 4.54660 4.59050 4.60559 4.64331 4.70089 4.72008 4.79797 4.83226 4.88898 4.99341 5.00692 5.03758 5.11277 5.14792 5.18552 5.22033 5.25397 5.29295 5.42384 5.46955 5.56097 5.61793 5.69067 5.70482 5.70622 5.77182 6.11403 6.15390 6.18399 6.20511 6.28324 6.36151 6.51047 6.66170 6.96288 7.53915 9.01157 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.022437 B = 0.002679 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.614130 B =10449.916696 C =10988.800815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.538 5.538 3 C 0.064 3.936 4 C -0.098 4.098 5 C 0.088 3.912 6 H 0.027 0.973 7 N -0.681 5.681 8 C 0.094 3.906 9 C 0.061 3.939 10 C -0.122 4.122 11 C -0.105 4.105 12 C -0.527 4.527 13 H 0.043 0.957 14 C 0.023 3.977 15 N -0.902 5.902 16 Si 0.943 3.057 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.096 4.096 21 C 0.135 3.865 22 H 0.042 0.958 23 C -0.086 4.086 24 C -0.101 4.101 25 C -0.131 4.131 26 C -0.126 4.126 27 C -0.127 4.127 28 C -0.128 4.128 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.022 0.978 32 H 0.030 0.970 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.068 0.932 36 H 0.338 0.662 37 H 0.047 0.953 38 H 0.004 0.996 39 H 0.034 0.966 40 H 0.054 0.946 41 H 0.017 0.983 42 H 0.009 0.991 43 H 0.050 0.950 44 H 0.032 0.968 45 H 0.258 0.742 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.125 0.875 49 H 0.137 0.863 50 H 0.140 0.860 51 H 0.138 0.862 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.317 -10.525 -0.707 25.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.262 5.262 3 C -0.064 4.064 4 C -0.137 4.137 5 C -0.022 4.022 6 H 0.045 0.955 7 N -0.312 5.312 8 C -0.035 4.035 9 C 0.060 3.940 10 C -0.180 4.180 11 C -0.162 4.162 12 C -0.566 4.566 13 H 0.061 0.939 14 C -0.176 4.176 15 N -0.541 5.541 16 Si 0.770 3.230 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.135 4.135 21 C 0.027 3.973 22 H 0.060 0.940 23 C -0.087 4.087 24 C -0.120 4.120 25 C -0.148 4.148 26 C -0.144 4.144 27 C -0.145 4.145 28 C -0.147 4.147 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.157 0.843 37 H 0.065 0.935 38 H 0.023 0.977 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.036 0.964 42 H 0.028 0.972 43 H 0.068 0.932 44 H 0.051 0.949 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.143 0.857 49 H 0.155 0.845 50 H 0.158 0.842 51 H 0.156 0.844 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -22.970 -10.526 -1.819 25.332 hybrid contribution 0.608 1.253 2.224 2.624 sum -22.362 -9.273 0.405 24.211 Atomic orbital electron populations 1.22413 0.86341 1.02723 1.00739 1.61905 1.08359 1.13480 1.42478 1.22057 0.94634 0.88785 1.00916 1.21498 0.93811 0.99534 0.98822 1.21565 0.87910 0.96102 0.96604 0.95539 1.60552 1.03154 1.04935 1.62571 1.21825 0.95388 0.92093 0.94193 1.18126 0.89628 0.93200 0.93005 1.21649 1.02464 0.96896 0.96951 1.21488 1.00921 0.96944 0.96891 1.21426 0.91848 1.04318 1.39022 0.93850 1.25525 0.98113 0.98152 0.95815 1.69977 1.05782 1.35793 1.42556 0.85812 0.77881 0.80411 0.78924 1.20394 1.21092 1.19886 1.21673 0.93360 0.95794 1.02632 1.20394 0.93775 0.91060 0.92115 0.93990 1.19738 0.99556 0.95375 0.94006 1.21118 0.98285 0.94645 0.97914 1.21448 0.99050 0.95145 0.99194 1.21462 0.99827 1.00720 0.92418 1.21360 0.99420 0.94650 0.99095 1.21206 0.99562 0.96337 0.97572 0.90301 0.90991 0.95904 0.95127 0.89125 0.92621 0.91374 0.84267 0.93469 0.97747 0.94743 0.92721 0.96362 0.97228 0.93150 0.94862 0.93297 0.90846 0.91686 0.85689 0.84532 0.84171 0.84376 0.85847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.10 127.69 1.16 1.60 16 2 N -0.54 -11.24 4.10 -901.59 -3.70 -14.94 16 3 C 0.06 1.40 5.46 86.33 0.47 1.87 16 4 C -0.10 -2.67 5.59 30.65 0.17 -2.49 16 5 C 0.09 2.56 2.56 44.99 0.12 2.68 16 6 H 0.03 0.82 7.80 -2.39 -0.02 0.80 16 7 N -0.68 -23.92 5.53 -491.17 -2.72 -26.64 16 8 C 0.09 3.94 4.39 86.30 0.38 4.32 16 9 C 0.06 2.97 0.57 -52.93 -0.03 2.94 16 10 C -0.12 -5.77 7.82 71.98 0.56 -5.21 16 11 C -0.10 -5.19 8.11 71.98 0.58 -4.60 16 12 C -0.53 -28.81 8.01 25.60 0.20 -28.60 16 13 H 0.04 2.37 7.75 -2.91 -0.02 2.35 16 14 C 0.02 1.26 5.10 84.65 0.43 1.69 16 15 N -0.90 -50.81 9.38 21.45 0.20 -50.61 16 16 Si 0.94 43.64 29.54 68.60 2.03 45.67 16 17 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 18 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 C -0.10 -2.42 4.62 30.65 0.14 -2.28 16 21 C 0.14 2.96 2.05 44.19 0.09 3.05 16 22 H 0.04 0.95 8.00 -2.38 -0.02 0.93 16 23 C -0.09 -1.75 3.78 -19.87 -0.08 -1.82 16 24 C -0.10 -1.97 7.89 22.27 0.18 -1.80 16 25 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 26 C -0.13 -1.89 10.05 22.27 0.22 -1.67 16 27 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 28 C -0.13 -2.37 9.67 22.27 0.22 -2.16 16 29 H 0.08 1.17 8.10 -2.38 -0.02 1.15 16 30 H 0.07 1.26 5.93 -2.39 -0.01 1.24 16 31 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.09 1.72 8.09 -2.39 -0.02 1.70 16 34 H 0.06 1.63 7.55 -2.39 -0.02 1.62 16 35 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.34 11.75 6.52 -89.69 -0.58 11.17 16 37 H 0.05 2.04 7.51 -2.39 -0.02 2.02 16 38 H 0.00 0.19 8.06 -2.39 -0.02 0.17 16 39 H 0.03 1.44 6.84 -2.38 -0.02 1.43 16 40 H 0.05 2.90 6.01 -2.39 -0.01 2.89 16 41 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 43 H 0.05 2.75 6.03 -2.38 -0.01 2.74 16 44 H 0.03 1.51 7.60 -2.39 -0.02 1.49 16 45 H 0.26 13.96 8.31 -92.71 -0.77 13.18 16 46 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.13 2.55 7.71 -2.91 -0.02 2.53 16 49 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 50 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 51 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 52 H 0.12 2.05 8.04 -2.91 -0.02 2.03 16 Total: -1.00 -58.25 391.72 1.37 -56.88 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.28 Total: 25.83 kcal Atomic # 6 Polarization: -41.47 SS G_CDS: 5.27 Total: -36.20 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -6.21 Total: -92.18 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -58.25 1.37 -56.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414163396.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.724 kcal (2) G-P(sol) polarization free energy of solvation -58.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds