Wall clock time and date at job start Tue Mar 31 2020 11:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46847 * 111.00080 * 2 1 4 4 C 1.53044 * 109.52471 * 185.84045 * 3 2 1 5 5 C 1.53120 * 109.27829 * 300.81994 * 4 3 2 6 6 H 1.08996 * 109.57103 * 177.58885 * 5 4 3 7 7 N 1.46898 * 109.52248 * 297.74905 * 5 4 3 8 8 C 1.46894 * 111.00101 * 274.68322 * 7 5 4 9 9 C 1.52996 * 109.47387 * 180.02562 * 8 7 5 10 10 C 1.53007 * 109.47181 * 299.99950 * 9 8 7 11 11 C 1.53004 * 109.47038 * 59.99677 * 9 8 7 12 12 C 1.50701 * 109.47550 * 179.97438 * 9 8 7 13 13 H 1.08004 * 119.99380 * 1.35978 * 12 9 8 14 14 C 1.37872 * 119.99990 * 181.36044 * 12 9 8 15 15 N 1.31524 * 119.99723 * 193.96119 * 14 12 9 16 16 Si 1.86796 * 120.00320 * 13.96260 * 14 12 9 17 17 H 1.48504 * 109.46848 * 84.55670 * 16 14 12 18 18 H 1.48502 * 109.47181 * 204.55228 * 16 14 12 19 19 H 1.48497 * 109.47097 * 324.55961 * 16 14 12 20 20 C 1.53116 * 109.15928 * 57.65453 * 5 4 3 21 21 C 1.46845 * 111.00381 * 124.21020 * 2 1 3 22 22 H 1.09000 * 109.46147 * 294.16854 * 21 2 1 23 23 C 1.50698 * 109.46255 * 54.14314 * 21 2 1 24 24 C 1.38236 * 120.00018 * 39.72676 * 23 21 2 25 25 C 1.38232 * 120.00234 * 179.74510 * 24 23 21 26 26 C 1.38238 * 120.00017 * 0.53140 * 25 24 23 27 27 C 1.38242 * 119.99557 * 359.74508 * 26 25 24 28 28 C 1.38228 * 120.00164 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.47725 * 56.04419 * 1 2 3 30 30 H 1.09000 * 109.47572 * 176.05046 * 1 2 3 31 31 H 1.09003 * 109.47010 * 296.04794 * 1 2 3 32 32 H 1.09001 * 109.46294 * 305.85367 * 3 2 1 33 33 H 1.08998 * 109.46100 * 65.82264 * 3 2 1 34 34 H 1.09002 * 109.49984 * 60.76171 * 4 3 2 35 35 H 1.09000 * 109.50467 * 180.88019 * 4 3 2 36 36 H 1.00899 * 110.99615 * 150.72729 * 7 5 4 37 37 H 1.09001 * 109.47129 * 299.99834 * 8 7 5 38 38 H 1.09004 * 109.47162 * 59.99940 * 8 7 5 39 39 H 1.09003 * 109.46811 * 69.31437 * 10 9 8 40 40 H 1.08991 * 109.46907 * 189.31261 * 10 9 8 41 41 H 1.08996 * 109.46569 * 309.31829 * 10 9 8 42 42 H 1.09001 * 109.47153 * 60.00513 * 11 9 8 43 43 H 1.08999 * 109.46874 * 179.97438 * 11 9 8 44 44 H 1.08996 * 109.47456 * 299.99818 * 11 9 8 45 45 H 0.97000 * 119.99785 * 179.97438 * 15 14 12 46 46 H 1.08997 * 109.50473 * 182.40882 * 20 5 4 47 47 H 1.08998 * 109.53834 * 62.30529 * 20 5 4 48 48 H 1.08003 * 120.00088 * 359.97438 * 24 23 21 49 49 H 1.08000 * 120.00532 * 180.29650 * 25 24 23 50 50 H 1.08001 * 120.00299 * 179.76725 * 26 25 24 51 51 H 1.08006 * 119.99600 * 179.97438 * 27 26 25 52 52 H 1.08003 * 120.00046 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5370 1.0143 6 1 5.1999 0.4714 0.8915 7 7 3.8087 1.2088 2.2834 8 6 4.7978 2.2531 2.5816 9 6 4.4425 2.9282 3.9078 10 6 3.0519 3.5577 3.8033 11 6 4.4477 1.8861 5.0280 12 6 5.4575 3.9993 4.2141 13 1 6.2618 4.1952 3.5203 14 6 5.3594 4.7289 5.3798 15 7 6.0611 5.8316 5.5264 16 14 4.2299 4.1514 6.7509 17 1 4.9410 3.1547 7.5913 18 1 3.8340 5.3123 7.5881 19 1 3.0169 3.5280 6.1634 20 6 3.5182 -0.8714 1.0208 21 6 1.9953 -0.7708 1.1337 22 1 1.7326 -0.2708 2.0660 23 6 1.3982 -2.1544 1.1206 24 6 1.2244 -2.8208 -0.0780 25 6 0.6817 -4.0921 -0.0896 26 6 0.3025 -4.6926 1.0964 27 6 0.4711 -4.0239 2.2945 28 6 1.0192 -2.7549 2.3066 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0708 31 1 -0.3633 0.4513 0.9233 32 1 1.5634 1.9257 -0.8330 33 1 1.7324 1.8608 0.9376 34 1 3.7813 0.8568 -1.0907 35 1 3.9099 2.3512 -0.1310 36 1 3.7467 0.5431 3.0391 37 1 5.7884 1.8046 2.6565 38 1 4.7944 2.9954 1.7833 39 1 2.3000 2.7705 3.7475 40 1 2.8661 4.1760 4.6814 41 1 2.9990 4.1749 2.9064 42 1 5.4384 1.4377 5.1026 43 1 4.1951 2.3672 5.9729 44 1 3.7138 1.1112 4.8068 45 1 5.9918 6.3451 6.3464 46 1 3.9099 -1.4302 1.8707 47 1 3.7813 -1.3842 0.0957 48 1 1.5161 -2.3498 -1.0051 49 1 0.5503 -4.6147 -1.0255 50 1 -0.1250 -5.6844 1.0870 51 1 0.1745 -4.4929 3.2211 52 1 1.1505 -2.2323 3.2426 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414163397.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:38 Heat of formation + Delta-G solvation = 43.856379 kcal Electronic energy + Delta-G solvation = -27884.105792 eV Core-core repulsion = 24462.639583 eV Total energy + Delta-G solvation = -3421.466208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.23718 -38.50552 -36.88317 -34.55955 -32.55490 -31.91258 -30.99338 -30.24336 -29.08689 -26.34669 -26.21331 -25.13750 -24.10050 -23.52227 -22.89516 -22.32591 -20.79843 -18.91964 -18.67395 -17.04839 -16.04593 -15.84566 -15.75426 -15.45533 -15.05944 -14.88599 -14.46160 -14.31648 -14.14361 -13.53221 -13.45040 -13.27509 -12.87545 -12.84646 -12.65987 -12.57694 -12.37239 -12.32702 -12.03893 -11.84248 -11.61743 -11.40652 -11.36631 -11.15869 -11.03015 -10.91342 -10.43966 -10.30127 -10.18998 -10.02703 -9.92888 -9.80978 -9.01277 -8.96697 -8.76773 -8.55897 -8.37657 -8.29825 -7.79824 -6.08360 -4.03867 1.23322 1.30665 3.30467 3.39288 3.44016 3.65453 3.95351 4.43255 4.56157 4.64548 4.82420 4.87955 4.97625 5.00762 5.14911 5.22238 5.24949 5.30200 5.40562 5.42659 5.50012 5.55123 5.63015 5.70266 5.81774 5.88478 5.90348 5.96286 5.96899 6.03560 6.08621 6.15193 6.16756 6.24133 6.25839 6.34281 6.39816 6.41768 6.50741 6.54207 6.59013 6.77042 6.80280 6.89749 6.91441 7.05894 7.15184 7.19038 7.40357 7.52359 7.62426 7.84973 7.94334 8.55211 8.96733 9.57942 11.05206 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019322 B = 0.003390 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.770000 B = 8258.160392 C = 8914.054507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.535 5.535 3 C 0.064 3.936 4 C -0.101 4.101 5 C 0.082 3.918 6 H 0.043 0.957 7 N -0.685 5.685 8 C 0.086 3.914 9 C 0.042 3.958 10 C -0.124 4.124 11 C -0.148 4.148 12 C -0.512 4.512 13 H 0.071 0.929 14 C 0.073 3.927 15 N -0.897 5.897 16 Si 0.885 3.115 17 H -0.289 1.289 18 H -0.307 1.307 19 H -0.247 1.247 20 C -0.105 4.105 21 C 0.130 3.870 22 H 0.061 0.939 23 C -0.075 4.075 24 C -0.095 4.095 25 C -0.128 4.128 26 C -0.126 4.126 27 C -0.123 4.123 28 C -0.116 4.116 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.024 0.976 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.334 0.666 37 H 0.020 0.980 38 H 0.064 0.936 39 H 0.029 0.971 40 H 0.042 0.958 41 H 0.039 0.961 42 H 0.045 0.955 43 H 0.039 0.961 44 H 0.032 0.968 45 H 0.263 0.737 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.130 0.870 49 H 0.118 0.882 50 H 0.117 0.883 51 H 0.119 0.881 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.531 -18.578 -11.289 24.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.259 5.259 3 C -0.063 4.063 4 C -0.139 4.139 5 C -0.028 4.028 6 H 0.061 0.939 7 N -0.317 5.317 8 C -0.042 4.042 9 C 0.041 3.959 10 C -0.182 4.182 11 C -0.205 4.205 12 C -0.550 4.550 13 H 0.089 0.911 14 C -0.129 4.129 15 N -0.535 5.535 16 Si 0.718 3.282 17 H -0.217 1.217 18 H -0.236 1.236 19 H -0.172 1.172 20 C -0.143 4.143 21 C 0.022 3.978 22 H 0.079 0.921 23 C -0.075 4.075 24 C -0.113 4.113 25 C -0.146 4.146 26 C -0.145 4.145 27 C -0.141 4.141 28 C -0.135 4.135 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.042 0.958 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.153 0.847 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.048 0.952 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.091 0.909 48 H 0.148 0.852 49 H 0.136 0.864 50 H 0.135 0.865 51 H 0.137 0.863 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.758 -18.190 -11.904 24.715 hybrid contribution 0.048 -0.383 1.961 1.999 sum -11.709 -18.573 -9.943 24.102 Atomic orbital electron populations 1.22375 0.87873 1.02007 1.00280 1.61958 1.07134 1.14432 1.42420 1.21964 0.95176 0.88007 1.01186 1.21533 0.94850 1.00492 0.97067 1.21543 0.97185 0.92318 0.91737 0.93906 1.60674 1.51406 1.16158 1.03501 1.21975 0.90929 0.92605 0.98710 1.18460 0.94425 0.92975 0.90071 1.22049 0.97053 0.98877 1.00195 1.22357 0.99457 0.98824 0.99868 1.20876 1.11705 1.16334 1.06078 0.91116 1.24979 0.95296 0.94012 0.98564 1.69969 1.42621 1.14031 1.26831 0.87305 0.82596 0.76512 0.81806 1.21667 1.23621 1.17242 1.21776 0.93599 0.96617 1.02304 1.20445 0.94238 0.89684 0.93411 0.92064 1.19926 0.98374 0.95999 0.93251 1.21089 0.98023 0.93915 0.98296 1.21175 0.99828 0.95609 0.97949 1.21123 1.00690 0.99820 0.92823 1.21089 0.99955 0.95097 0.97965 1.21092 0.98995 0.95538 0.97830 0.91776 0.91385 0.95782 0.91728 0.92675 0.91861 0.91287 0.84666 0.96201 0.91748 0.95171 0.93889 0.94184 0.93606 0.94299 0.94888 0.92761 0.91792 0.90853 0.85220 0.86394 0.86533 0.86341 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.09 60.06 0.55 0.79 16 2 N -0.53 -6.16 4.10 -236.33 -0.97 -7.13 16 3 C 0.06 0.80 5.32 -3.83 -0.02 0.78 16 4 C -0.10 -1.28 5.70 -26.65 -0.15 -1.43 16 5 C 0.08 1.09 2.84 -67.59 -0.19 0.90 16 6 H 0.04 0.59 7.80 -51.93 -0.41 0.19 16 7 N -0.68 -10.53 4.39 -106.60 -0.47 -11.00 16 8 C 0.09 1.63 4.37 -3.83 -0.02 1.62 16 9 C 0.04 0.93 0.57 -155.66 -0.09 0.84 16 10 C -0.12 -2.70 7.55 37.16 0.28 -2.42 16 11 C -0.15 -3.10 7.36 37.16 0.27 -2.83 16 12 C -0.51 -13.99 8.62 -34.44 -0.30 -14.29 16 13 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 14 C 0.07 2.09 5.32 -17.82 -0.09 1.99 16 15 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 16 Si 0.88 21.91 22.79 -169.99 -3.87 18.04 16 17 H -0.29 -7.11 7.10 56.52 0.40 -6.71 16 18 H -0.31 -7.77 7.11 56.52 0.40 -7.37 16 19 H -0.25 -5.67 4.65 56.52 0.26 -5.41 16 20 C -0.10 -1.22 4.74 -26.65 -0.13 -1.35 16 21 C 0.13 1.52 1.90 -68.87 -0.13 1.39 16 22 H 0.06 0.82 7.52 -51.93 -0.39 0.43 16 23 C -0.08 -0.82 3.78 -104.62 -0.40 -1.21 16 24 C -0.10 -0.97 7.89 -39.58 -0.31 -1.28 16 25 C -0.13 -1.17 10.05 -39.58 -0.40 -1.56 16 26 C -0.13 -1.13 10.05 -39.58 -0.40 -1.53 16 27 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 28 C -0.12 -1.23 9.67 -39.59 -0.38 -1.61 16 29 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 30 H 0.07 0.71 5.92 -51.93 -0.31 0.40 16 31 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 33 H 0.05 0.81 7.69 -51.93 -0.40 0.41 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.07 0.95 7.43 -51.93 -0.39 0.56 16 36 H 0.33 5.08 6.33 -39.29 -0.25 4.83 16 37 H 0.02 0.39 8.06 -51.93 -0.42 -0.03 16 38 H 0.06 1.28 7.43 -51.93 -0.39 0.89 16 39 H 0.03 0.59 7.88 -51.93 -0.41 0.18 16 40 H 0.04 0.99 4.30 -51.93 -0.22 0.77 16 41 H 0.04 0.86 8.12 -51.93 -0.42 0.44 16 42 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.04 0.87 2.25 -51.93 -0.12 0.76 16 44 H 0.03 0.59 6.57 -51.93 -0.34 0.25 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 47 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.13 1.32 7.71 -52.48 -0.40 0.91 16 49 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 50 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 51 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 52 H 0.12 1.20 8.04 -52.48 -0.42 0.78 16 LS Contribution 379.31 15.07 5.72 5.72 Total: -1.00 -29.01 379.31 -10.31 -39.32 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -9.19 Total: 4.44 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -2.30 Total: -22.76 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -0.66 Total: -44.75 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -3.87 Total: 18.04 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -29.01 -10.31 -39.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414163397.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.177 kcal (2) G-P(sol) polarization free energy of solvation -29.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds