Wall clock time and date at job start Tue Mar 31 2020 11:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46847 * 111.00080 * 2 1 4 4 C 1.53044 * 109.52471 * 185.84045 * 3 2 1 5 5 C 1.53120 * 109.27829 * 300.81994 * 4 3 2 6 6 H 1.08996 * 109.57103 * 177.58885 * 5 4 3 7 7 N 1.46898 * 109.52248 * 297.74905 * 5 4 3 8 8 C 1.46894 * 111.00101 * 274.68322 * 7 5 4 9 9 C 1.52996 * 109.47387 * 180.02562 * 8 7 5 10 10 C 1.53007 * 109.47181 * 299.99950 * 9 8 7 11 11 C 1.53004 * 109.47038 * 59.99677 * 9 8 7 12 12 C 1.50701 * 109.47550 * 179.97438 * 9 8 7 13 13 H 1.08004 * 119.99380 * 1.35978 * 12 9 8 14 14 C 1.37872 * 119.99990 * 181.36044 * 12 9 8 15 15 N 1.31524 * 119.99723 * 193.96119 * 14 12 9 16 16 Si 1.86796 * 120.00320 * 13.96260 * 14 12 9 17 17 H 1.48504 * 109.46848 * 84.55670 * 16 14 12 18 18 H 1.48502 * 109.47181 * 204.55228 * 16 14 12 19 19 H 1.48497 * 109.47097 * 324.55961 * 16 14 12 20 20 C 1.53116 * 109.15928 * 57.65453 * 5 4 3 21 21 C 1.46845 * 111.00381 * 124.21020 * 2 1 3 22 22 H 1.09000 * 109.46147 * 294.16854 * 21 2 1 23 23 C 1.50698 * 109.46255 * 54.14314 * 21 2 1 24 24 C 1.38236 * 120.00018 * 39.72676 * 23 21 2 25 25 C 1.38232 * 120.00234 * 179.74510 * 24 23 21 26 26 C 1.38238 * 120.00017 * 0.53140 * 25 24 23 27 27 C 1.38242 * 119.99557 * 359.74508 * 26 25 24 28 28 C 1.38228 * 120.00164 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.47725 * 56.04419 * 1 2 3 30 30 H 1.09000 * 109.47572 * 176.05046 * 1 2 3 31 31 H 1.09003 * 109.47010 * 296.04794 * 1 2 3 32 32 H 1.09001 * 109.46294 * 305.85367 * 3 2 1 33 33 H 1.08998 * 109.46100 * 65.82264 * 3 2 1 34 34 H 1.09002 * 109.49984 * 60.76171 * 4 3 2 35 35 H 1.09000 * 109.50467 * 180.88019 * 4 3 2 36 36 H 1.00899 * 110.99615 * 150.72729 * 7 5 4 37 37 H 1.09001 * 109.47129 * 299.99834 * 8 7 5 38 38 H 1.09004 * 109.47162 * 59.99940 * 8 7 5 39 39 H 1.09003 * 109.46811 * 69.31437 * 10 9 8 40 40 H 1.08991 * 109.46907 * 189.31261 * 10 9 8 41 41 H 1.08996 * 109.46569 * 309.31829 * 10 9 8 42 42 H 1.09001 * 109.47153 * 60.00513 * 11 9 8 43 43 H 1.08999 * 109.46874 * 179.97438 * 11 9 8 44 44 H 1.08996 * 109.47456 * 299.99818 * 11 9 8 45 45 H 0.97000 * 119.99785 * 179.97438 * 15 14 12 46 46 H 1.08997 * 109.50473 * 182.40882 * 20 5 4 47 47 H 1.08998 * 109.53834 * 62.30529 * 20 5 4 48 48 H 1.08003 * 120.00088 * 359.97438 * 24 23 21 49 49 H 1.08000 * 120.00532 * 180.29650 * 25 24 23 50 50 H 1.08001 * 120.00299 * 179.76725 * 26 25 24 51 51 H 1.08006 * 119.99600 * 179.97438 * 27 26 25 52 52 H 1.08003 * 120.00046 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3709 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5370 1.0143 6 1 5.1999 0.4714 0.8915 7 7 3.8087 1.2088 2.2834 8 6 4.7978 2.2531 2.5816 9 6 4.4425 2.9282 3.9078 10 6 3.0519 3.5577 3.8033 11 6 4.4477 1.8861 5.0280 12 6 5.4575 3.9993 4.2141 13 1 6.2618 4.1952 3.5203 14 6 5.3594 4.7289 5.3798 15 7 6.0611 5.8316 5.5264 16 14 4.2299 4.1514 6.7509 17 1 4.9410 3.1547 7.5913 18 1 3.8340 5.3123 7.5881 19 1 3.0169 3.5280 6.1634 20 6 3.5182 -0.8714 1.0208 21 6 1.9953 -0.7708 1.1337 22 1 1.7326 -0.2708 2.0660 23 6 1.3982 -2.1544 1.1206 24 6 1.2244 -2.8208 -0.0780 25 6 0.6817 -4.0921 -0.0896 26 6 0.3025 -4.6926 1.0964 27 6 0.4711 -4.0239 2.2945 28 6 1.0192 -2.7549 2.3066 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0708 31 1 -0.3633 0.4513 0.9233 32 1 1.5634 1.9257 -0.8330 33 1 1.7324 1.8608 0.9376 34 1 3.7813 0.8568 -1.0907 35 1 3.9099 2.3512 -0.1310 36 1 3.7467 0.5431 3.0391 37 1 5.7884 1.8046 2.6565 38 1 4.7944 2.9954 1.7833 39 1 2.3000 2.7705 3.7475 40 1 2.8661 4.1760 4.6814 41 1 2.9990 4.1749 2.9064 42 1 5.4384 1.4377 5.1026 43 1 4.1951 2.3672 5.9729 44 1 3.7138 1.1112 4.8068 45 1 5.9918 6.3451 6.3464 46 1 3.9099 -1.4302 1.8707 47 1 3.7813 -1.3842 0.0957 48 1 1.5161 -2.3498 -1.0051 49 1 0.5503 -4.6147 -1.0255 50 1 -0.1250 -5.6844 1.0870 51 1 0.1745 -4.4929 3.2211 52 1 1.1505 -2.2323 3.2426 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414163397.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:38 Heat of formation + Delta-G solvation = 27.100794 kcal Electronic energy + Delta-G solvation = -27884.832368 eV Core-core repulsion = 24462.639583 eV Total energy + Delta-G solvation = -3422.192785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.13020 -39.49497 -38.34756 -35.87539 -33.89635 -33.39940 -31.75513 -31.54500 -29.95107 -27.97106 -27.34360 -27.08324 -25.65378 -24.48092 -23.72814 -23.16689 -21.64759 -20.62547 -19.86410 -18.06090 -17.80514 -17.39005 -16.73109 -16.48620 -16.24416 -15.91949 -15.60757 -15.40391 -15.04025 -14.94890 -14.76400 -14.51383 -14.17723 -14.12774 -13.98765 -13.85613 -13.66976 -13.46799 -13.37017 -13.20358 -12.72760 -12.57306 -12.43655 -12.32510 -12.10642 -12.02948 -11.90902 -11.80745 -11.75535 -11.59225 -11.33869 -11.15122 -10.93147 -10.56836 -10.32141 -9.72451 -9.51612 -9.35021 -9.01885 -8.29799 -6.28597 0.51061 0.59435 1.33851 1.37301 1.48047 2.34824 2.90495 3.05303 3.07578 3.39468 3.68722 3.96333 4.10663 4.13296 4.23565 4.26697 4.30541 4.34737 4.40064 4.42882 4.49056 4.56155 4.64328 4.67162 4.69138 4.76193 4.78255 4.83660 4.87141 4.89150 5.02199 5.04182 5.06293 5.08789 5.12669 5.14927 5.17198 5.18966 5.22579 5.28352 5.30359 5.40105 5.62263 5.65417 5.71359 5.76051 5.76988 5.87402 6.18270 6.22432 6.26349 6.27522 6.36022 6.61648 6.79204 7.36765 8.87645 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019322 B = 0.003390 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.770000 B = 8258.160392 C = 8914.054507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.531 5.531 3 C 0.069 3.931 4 C -0.098 4.098 5 C 0.083 3.917 6 H 0.038 0.962 7 N -0.676 5.676 8 C 0.102 3.898 9 C 0.038 3.962 10 C -0.117 4.117 11 C -0.146 4.146 12 C -0.512 4.512 13 H 0.028 0.972 14 C 0.016 3.984 15 N -0.949 5.949 16 Si 0.943 3.057 17 H -0.283 1.283 18 H -0.317 1.317 19 H -0.214 1.214 20 C -0.096 4.096 21 C 0.136 3.864 22 H 0.045 0.955 23 C -0.085 4.085 24 C -0.102 4.102 25 C -0.130 4.130 26 C -0.129 4.129 27 C -0.129 4.129 28 C -0.130 4.130 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.014 0.986 32 H 0.074 0.926 33 H 0.033 0.967 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.339 0.661 37 H 0.010 0.990 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.028 0.972 41 H 0.032 0.968 42 H 0.044 0.956 43 H 0.028 0.972 44 H 0.068 0.932 45 H 0.262 0.738 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.129 0.871 49 H 0.137 0.863 50 H 0.139 0.861 51 H 0.135 0.865 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.764 -21.705 -11.756 28.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.256 5.256 3 C -0.058 4.058 4 C -0.136 4.136 5 C -0.027 4.027 6 H 0.056 0.944 7 N -0.309 5.309 8 C -0.027 4.027 9 C 0.037 3.963 10 C -0.174 4.174 11 C -0.203 4.203 12 C -0.551 4.551 13 H 0.046 0.954 14 C -0.181 4.181 15 N -0.589 5.589 16 Si 0.773 3.227 17 H -0.211 1.211 18 H -0.247 1.247 19 H -0.138 1.138 20 C -0.134 4.134 21 C 0.028 3.972 22 H 0.063 0.937 23 C -0.085 4.085 24 C -0.120 4.120 25 C -0.148 4.148 26 C -0.147 4.147 27 C -0.147 4.147 28 C -0.148 4.148 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.033 0.967 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.159 0.841 37 H 0.028 0.972 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.047 0.953 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.099 0.901 48 H 0.146 0.854 49 H 0.155 0.845 50 H 0.157 0.843 51 H 0.153 0.847 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.006 -21.352 -12.394 28.384 hybrid contribution 0.789 0.562 1.979 2.204 sum -13.217 -20.790 -10.415 26.746 Atomic orbital electron populations 1.22370 0.87205 1.02339 1.00235 1.61982 1.07690 1.13618 1.42284 1.21876 0.94975 0.88557 1.00426 1.21499 0.95039 0.99675 0.97427 1.21596 0.97178 0.93312 0.90643 0.94364 1.60593 1.49784 1.15918 1.04583 1.21612 0.91300 0.93169 0.96622 1.18442 0.93209 0.92335 0.92332 1.21937 0.97097 0.99220 0.99183 1.22274 1.00686 0.99033 0.98267 1.21236 1.11511 1.17421 1.04889 0.95361 1.25807 0.97193 0.93921 1.01160 1.70120 1.45341 1.15838 1.27640 0.86361 0.82000 0.75857 0.78468 1.21074 1.24652 1.13766 1.21702 0.93641 0.95242 1.02854 1.20346 0.94108 0.90209 0.92568 0.93727 1.19855 0.99285 0.95593 0.93812 1.21129 0.98454 0.94497 0.97914 1.21445 0.99084 0.95258 0.99032 1.21441 1.00039 1.00717 0.92471 1.21347 0.99511 0.94769 0.99062 1.21216 0.99618 0.96235 0.97776 0.90734 0.91004 0.96729 0.90791 0.94871 0.90528 0.92759 0.84130 0.97179 0.93170 0.92623 0.95302 0.94859 0.93691 0.95386 0.91287 0.92882 0.91400 0.90136 0.85355 0.84467 0.84342 0.84737 0.86179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 9.09 127.69 1.16 1.68 16 2 N -0.53 -11.28 4.10 -901.61 -3.69 -14.97 16 3 C 0.07 1.63 5.32 86.33 0.46 2.09 16 4 C -0.10 -2.37 5.70 30.65 0.17 -2.19 16 5 C 0.08 2.07 2.84 44.99 0.13 2.20 16 6 H 0.04 1.02 7.80 -2.39 -0.02 1.00 16 7 N -0.68 -19.81 4.39 -491.18 -2.16 -21.97 16 8 C 0.10 3.85 4.37 86.30 0.38 4.23 16 9 C 0.04 1.65 0.57 -52.92 -0.03 1.62 16 10 C -0.12 -4.90 7.55 71.98 0.54 -4.35 16 11 C -0.15 -5.75 7.36 71.98 0.53 -5.22 16 12 C -0.51 -28.73 8.62 25.60 0.22 -28.51 16 13 H 0.03 1.77 7.99 -2.91 -0.02 1.75 16 14 C 0.02 0.93 5.32 84.65 0.45 1.38 16 15 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 16 Si 0.94 45.10 22.79 68.60 1.56 46.67 16 17 H -0.28 -13.21 7.10 99.48 0.71 -12.51 16 18 H -0.32 -15.56 7.11 99.48 0.71 -14.85 16 19 H -0.21 -9.05 4.65 99.48 0.46 -8.59 16 20 C -0.10 -2.05 4.74 30.65 0.15 -1.91 16 21 C 0.14 2.92 1.90 44.19 0.08 3.00 16 22 H 0.04 1.12 7.52 -2.39 -0.02 1.10 16 23 C -0.09 -1.68 3.78 -19.87 -0.08 -1.76 16 24 C -0.10 -1.84 7.89 22.27 0.18 -1.66 16 25 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16 26 C -0.13 -1.90 10.05 22.27 0.22 -1.68 16 27 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 28 C -0.13 -2.48 9.67 22.27 0.22 -2.26 16 29 H 0.07 1.29 8.10 -2.39 -0.02 1.27 16 30 H 0.07 1.36 5.92 -2.39 -0.01 1.34 16 31 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.07 1.60 8.09 -2.39 -0.02 1.58 16 33 H 0.03 0.93 7.69 -2.39 -0.02 0.91 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.05 1.47 7.43 -2.39 -0.02 1.45 16 36 H 0.34 9.47 6.33 -89.70 -0.57 8.90 16 37 H 0.01 0.40 8.06 -2.39 -0.02 0.38 16 38 H 0.05 2.02 7.43 -2.38 -0.02 2.01 16 39 H 0.05 2.04 7.88 -2.39 -0.02 2.02 16 40 H 0.03 1.27 4.30 -2.39 -0.01 1.26 16 41 H 0.03 1.40 8.12 -2.39 -0.02 1.38 16 42 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.03 1.17 2.25 -2.39 -0.01 1.17 16 44 H 0.07 2.22 6.57 -2.39 -0.02 2.20 16 45 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 46 H 0.07 1.41 8.08 -2.39 -0.02 1.39 16 47 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.13 2.31 7.71 -2.91 -0.02 2.29 16 49 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 50 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 51 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 52 H 0.12 2.20 8.04 -2.91 -0.02 2.17 16 Total: -1.00 -64.00 379.31 1.31 -62.69 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: 0.07 Total: 24.37 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 5.23 Total: -36.99 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -5.55 Total: -96.72 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.56 Total: 46.67 kcal Total: -64.00 1.31 -62.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414163397.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.788 kcal (2) G-P(sol) polarization free energy of solvation -64.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds