Wall clock time and date at job start Tue Mar 31 2020 11:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46852 * 110.99732 * 2 1 4 4 C 1.53038 * 109.52031 * 174.16330 * 3 2 1 5 5 C 1.53114 * 109.27909 * 59.18116 * 4 3 2 6 6 H 1.09007 * 109.57790 * 62.28447 * 5 4 3 7 7 N 1.46902 * 109.52210 * 182.43491 * 5 4 3 8 8 C 1.46903 * 111.00338 * 274.68457 * 7 5 4 9 9 C 1.53002 * 109.46965 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.46924 * 59.99962 * 9 8 7 11 11 C 1.52998 * 109.47143 * 300.00090 * 9 8 7 12 12 C 1.50702 * 109.46845 * 179.97438 * 9 8 7 13 13 H 1.07999 * 120.00270 * 359.82142 * 12 9 8 14 14 C 1.37875 * 119.99768 * 179.82405 * 12 9 8 15 15 N 1.31510 * 120.00317 * 1.44904 * 14 12 9 16 16 Si 1.86805 * 119.99946 * 181.45399 * 14 12 9 17 17 H 1.48493 * 109.46912 * 269.99789 * 16 14 12 18 18 H 1.48501 * 109.47142 * 149.99466 * 16 14 12 19 19 H 1.48500 * 109.46952 * 29.99794 * 16 14 12 20 20 C 1.53110 * 109.16427 * 302.34375 * 5 4 3 21 21 C 1.46846 * 111.00126 * 235.79593 * 2 1 3 22 22 H 1.09003 * 109.46493 * 65.81549 * 21 2 1 23 23 C 1.50709 * 109.46209 * 305.85411 * 21 2 1 24 24 C 1.38240 * 119.99526 * 319.67215 * 23 21 2 25 25 C 1.38228 * 119.99821 * 179.74417 * 24 23 21 26 26 C 1.38244 * 119.99960 * 0.53085 * 25 24 23 27 27 C 1.38237 * 119.99538 * 359.74591 * 26 25 24 28 28 C 1.38228 * 120.00167 * 139.94768 * 23 21 2 29 29 H 1.09000 * 109.46861 * 184.20807 * 1 2 3 30 30 H 1.08996 * 109.46741 * 304.20274 * 1 2 3 31 31 H 1.09000 * 109.47382 * 64.20927 * 1 2 3 32 32 H 1.09000 * 109.46169 * 294.17898 * 3 2 1 33 33 H 1.09004 * 109.45920 * 54.14888 * 3 2 1 34 34 H 1.09000 * 109.50707 * 299.23666 * 4 3 2 35 35 H 1.09003 * 109.49846 * 179.12402 * 4 3 2 36 36 H 1.00902 * 110.99753 * 38.63961 * 7 5 4 37 37 H 1.08991 * 109.46894 * 59.99798 * 8 7 5 38 38 H 1.09000 * 109.46874 * 300.00225 * 8 7 5 39 39 H 1.09007 * 109.46781 * 172.73157 * 10 9 8 40 40 H 1.08997 * 109.47410 * 292.73733 * 10 9 8 41 41 H 1.09002 * 109.47186 * 52.74249 * 10 9 8 42 42 H 1.08994 * 109.47165 * 307.64421 * 11 9 8 43 43 H 1.08998 * 109.47082 * 67.65046 * 11 9 8 44 44 H 1.09007 * 109.46817 * 187.64600 * 11 9 8 45 45 H 0.97005 * 120.00168 * 357.01717 * 15 14 12 46 46 H 1.09002 * 109.50857 * 177.59491 * 20 5 4 47 47 H 1.08998 * 109.50438 * 297.67505 * 20 5 4 48 48 H 1.07998 * 119.99841 * 359.97438 * 24 23 21 49 49 H 1.07997 * 120.00107 * 180.29547 * 25 24 23 50 50 H 1.07997 * 119.99673 * 179.77034 * 26 25 24 51 51 H 1.08002 * 119.99341 * 180.02562 * 27 26 25 52 52 H 1.08003 * 120.00283 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1187 0.5371 -1.0145 6 1 3.8896 1.0352 -1.9566 7 7 5.5756 0.4489 -0.8476 8 6 6.2423 1.6320 -1.4078 9 6 7.7547 1.5041 -1.2150 10 6 8.2559 0.2489 -1.9320 11 6 8.0715 1.3993 0.2782 12 6 8.4387 2.7176 -1.7902 13 1 7.8536 3.5001 -2.2501 14 6 9.8117 2.8286 -1.7294 15 7 10.5265 1.8627 -1.1951 16 14 10.6565 4.3512 -2.4058 17 1 10.9856 4.1394 -3.8383 18 1 11.9052 4.6045 -1.6431 19 1 9.7501 5.5201 -2.2737 20 6 3.5182 -0.8713 -1.0210 21 6 1.9953 -0.7706 -1.1338 22 1 1.7324 -0.2707 -2.0661 23 6 1.3982 -2.1544 -1.1208 24 6 1.2360 -2.8258 0.0767 25 6 0.6835 -4.0928 0.0892 26 6 0.3034 -4.6929 -1.0967 27 6 0.4709 -4.0237 -2.2947 28 6 1.0181 -2.7543 -2.3066 29 1 -0.3633 -1.0249 0.0754 30 1 -0.3633 0.5777 0.8499 31 1 -0.3634 0.4471 -0.9253 32 1 1.7324 1.8609 -0.9376 33 1 1.5634 1.9257 0.8331 34 1 3.7814 0.8568 1.0905 35 1 3.9098 2.3513 0.1310 36 1 5.8213 0.3208 0.1226 37 1 5.8855 2.5261 -0.8967 38 1 6.0162 1.7069 -2.4714 39 1 9.3454 0.2258 -1.9052 40 1 7.8612 -0.6364 -1.4335 41 1 7.9183 0.2632 -2.9684 42 1 7.5976 2.2249 0.8090 43 1 7.6921 0.4533 0.6645 44 1 9.1507 1.4449 0.4247 45 1 10.0856 1.0918 -0.8048 46 1 3.9099 -1.4301 -1.8710 47 1 3.7820 -1.3837 -0.0959 48 1 1.5375 -2.3589 1.0027 49 1 0.5524 -4.6155 1.0251 50 1 -0.1249 -5.6843 -1.0872 51 1 0.1735 -4.4923 -3.2211 52 1 1.1486 -2.2314 -3.2425 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414163400.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:43 Heat of formation + Delta-G solvation = 28.419499 kcal Electronic energy + Delta-G solvation = -27214.024263 eV Core-core repulsion = 23791.888661 eV Total energy + Delta-G solvation = -3422.135602 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.27916 -38.50775 -37.05016 -34.87248 -32.65789 -31.78463 -31.01723 -29.60346 -29.12075 -26.20713 -25.84896 -25.29512 -23.83295 -23.31326 -22.82349 -22.23204 -20.78501 -19.75333 -18.60385 -17.15332 -16.74879 -15.87974 -15.70786 -15.16577 -14.96795 -14.55213 -14.38989 -14.18771 -13.94233 -13.70352 -13.45297 -13.23655 -13.19198 -12.75208 -12.71341 -12.46731 -12.27008 -12.12723 -11.94842 -11.52853 -11.33450 -11.26352 -11.15106 -11.08181 -10.96821 -10.72967 -10.56512 -10.44449 -10.39847 -10.33783 -10.04985 -9.62065 -9.30254 -9.04373 -8.80778 -8.49810 -8.28367 -8.18501 -7.73820 -6.14445 -3.98934 1.19353 1.27718 3.45900 3.48713 3.58566 3.64206 3.77050 4.47520 4.54497 4.65945 4.75392 4.84119 4.85705 4.97020 5.03448 5.10240 5.23795 5.27176 5.33970 5.40758 5.42358 5.44350 5.48308 5.55102 5.68391 5.72234 5.77633 5.83732 5.92811 5.96455 6.04234 6.18616 6.23517 6.30656 6.34736 6.37999 6.38765 6.46766 6.52087 6.67240 6.83846 6.85335 6.93510 6.95760 6.99080 7.13859 7.23943 7.30308 7.66965 7.71070 7.83206 8.00939 8.38715 8.51749 8.96456 9.72500 11.11325 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.022671 B = 0.002685 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.786771 B =10426.190138 C =10982.523930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.534 5.534 3 C 0.062 3.938 4 C -0.147 4.147 5 C 0.087 3.913 6 H 0.068 0.932 7 N -0.682 5.682 8 C 0.084 3.916 9 C 0.054 3.946 10 C -0.132 4.132 11 C -0.146 4.146 12 C -0.586 4.586 13 H 0.045 0.955 14 C 0.024 3.976 15 N -0.921 5.921 16 Si 1.065 2.935 17 H -0.289 1.289 18 H -0.286 1.286 19 H -0.291 1.291 20 C -0.091 4.091 21 C 0.126 3.874 22 H 0.047 0.953 23 C -0.074 4.074 24 C -0.093 4.093 25 C -0.126 4.126 26 C -0.124 4.124 27 C -0.123 4.123 28 C -0.116 4.116 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.022 0.978 32 H 0.032 0.968 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.338 0.662 37 H 0.015 0.985 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.026 0.974 41 H 0.028 0.972 42 H 0.028 0.972 43 H 0.021 0.979 44 H 0.068 0.932 45 H 0.283 0.717 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.130 0.870 49 H 0.119 0.881 50 H 0.118 0.882 51 H 0.119 0.881 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.438 -8.620 2.215 24.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.258 5.258 3 C -0.066 4.066 4 C -0.186 4.186 5 C -0.024 4.024 6 H 0.087 0.913 7 N -0.312 5.312 8 C -0.044 4.044 9 C 0.053 3.947 10 C -0.190 4.190 11 C -0.204 4.204 12 C -0.625 4.625 13 H 0.064 0.936 14 C -0.180 4.180 15 N -0.562 5.562 16 Si 0.894 3.106 17 H -0.216 1.216 18 H -0.211 1.211 19 H -0.217 1.217 20 C -0.129 4.129 21 C 0.017 3.983 22 H 0.065 0.935 23 C -0.074 4.074 24 C -0.111 4.111 25 C -0.144 4.144 26 C -0.143 4.143 27 C -0.141 4.141 28 C -0.134 4.134 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.157 0.843 37 H 0.033 0.967 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.045 0.955 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.040 0.960 44 H 0.087 0.913 45 H 0.100 0.900 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.148 0.852 49 H 0.137 0.863 50 H 0.136 0.864 51 H 0.137 0.863 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.669 -8.524 1.821 22.432 hybrid contribution -2.115 0.480 0.104 2.172 sum -22.784 -8.044 1.925 24.239 Atomic orbital electron populations 1.22411 0.87546 1.02505 1.00157 1.61924 1.07338 1.13675 1.42896 1.22021 0.95734 0.88498 1.00337 1.22362 0.94409 1.01273 1.00557 1.21582 0.88983 0.94644 0.97177 0.91349 1.60656 1.04725 1.42190 1.23580 1.22040 0.96181 0.88322 0.97844 1.18256 0.89560 0.94887 0.91948 1.21863 1.01775 0.96831 0.98487 1.22057 1.02907 0.97009 0.98458 1.21883 0.94195 1.04911 1.41538 0.93643 1.25600 0.94421 1.02175 0.95815 1.70805 1.39636 1.09459 1.36290 0.83616 0.75708 0.74954 0.76317 1.21611 1.21133 1.21731 1.21575 0.90778 0.97359 1.03234 1.20590 0.95448 0.90224 0.92041 0.93523 1.19773 0.98532 0.95682 0.93432 1.21081 0.97750 0.94008 0.98265 1.21188 0.99580 0.95568 0.98056 1.21137 1.00558 0.99783 0.92785 1.21074 0.99989 0.95006 0.97998 1.21041 0.99149 0.95663 0.97596 0.90948 0.91573 0.95945 0.94968 0.90807 0.90992 0.91424 0.84327 0.96723 0.92611 0.92068 0.95477 0.95316 0.95294 0.95986 0.91325 0.90042 0.90841 0.91013 0.85179 0.86255 0.86422 0.86280 0.86327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.10 60.07 0.55 0.75 16 2 N -0.53 -5.76 4.11 -236.31 -0.97 -6.74 16 3 C 0.06 0.69 5.46 -3.83 -0.02 0.67 16 4 C -0.15 -1.88 5.35 -26.65 -0.14 -2.02 16 5 C 0.09 1.25 2.53 -67.60 -0.17 1.08 16 6 H 0.07 1.04 7.80 -51.93 -0.41 0.63 16 7 N -0.68 -11.83 5.61 -106.60 -0.60 -12.43 16 8 C 0.08 1.75 4.38 -3.82 -0.02 1.73 16 9 C 0.05 1.30 0.57 -155.66 -0.09 1.22 16 10 C -0.13 -3.19 7.90 37.16 0.29 -2.89 16 11 C -0.15 -3.39 7.61 37.16 0.28 -3.11 16 12 C -0.59 -16.10 8.01 -34.44 -0.28 -16.37 16 13 H 0.05 1.26 7.74 -52.49 -0.41 0.85 16 14 C 0.02 0.66 5.10 -17.82 -0.09 0.57 16 15 N -0.92 -27.00 12.12 55.43 0.67 -26.33 16 16 Si 1.06 25.13 29.90 -169.99 -5.08 20.05 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.09 -1.18 4.96 -26.66 -0.13 -1.32 16 21 C 0.13 1.42 2.04 -68.87 -0.14 1.28 16 22 H 0.05 0.55 8.00 -51.93 -0.42 0.13 16 23 C -0.07 -0.80 3.76 -104.62 -0.39 -1.19 16 24 C -0.09 -0.96 7.93 -39.58 -0.31 -1.28 16 25 C -0.13 -1.17 10.05 -39.58 -0.40 -1.56 16 26 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 27 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 28 C -0.12 -1.18 9.67 -39.59 -0.38 -1.56 16 29 H 0.07 0.68 5.96 -51.93 -0.31 0.37 16 30 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 31 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.74 8.09 -51.93 -0.42 0.32 16 34 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 35 H 0.07 0.93 7.54 -51.93 -0.39 0.53 16 36 H 0.34 5.85 6.66 -39.29 -0.26 5.59 16 37 H 0.01 0.31 7.51 -51.93 -0.39 -0.08 16 38 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 39 H 0.06 1.62 5.19 -51.93 -0.27 1.35 16 40 H 0.03 0.60 7.80 -51.93 -0.41 0.19 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 43 H 0.02 0.45 6.94 -51.93 -0.36 0.09 16 44 H 0.07 1.77 5.25 -51.93 -0.27 1.49 16 45 H 0.28 8.11 3.56 -40.82 -0.15 7.96 16 46 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 47 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 48 H 0.13 1.37 7.73 -52.49 -0.41 0.97 16 49 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 50 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 51 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 52 H 0.12 1.08 8.04 -52.48 -0.42 0.66 16 LS Contribution 388.66 15.07 5.86 5.86 Total: -1.00 -28.76 388.66 -11.50 -40.27 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -9.14 Total: 6.35 kcal Atomic # 6 Polarization: -24.78 SS G_CDS: -2.24 Total: -27.02 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: -0.90 Total: -45.50 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.08 Total: 20.05 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.76 -11.50 -40.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414163400.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.685 kcal (2) G-P(sol) polarization free energy of solvation -28.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds