Wall clock time and date at job start Tue Mar 31 2020 11:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46852 * 110.99732 * 2 1 4 4 C 1.53038 * 109.52031 * 174.16330 * 3 2 1 5 5 C 1.53114 * 109.27909 * 59.18116 * 4 3 2 6 6 H 1.09007 * 109.57790 * 62.28447 * 5 4 3 7 7 N 1.46902 * 109.52210 * 182.43491 * 5 4 3 8 8 C 1.46903 * 111.00338 * 274.68457 * 7 5 4 9 9 C 1.53002 * 109.46965 * 179.97438 * 8 7 5 10 10 C 1.53002 * 109.46924 * 59.99962 * 9 8 7 11 11 C 1.52998 * 109.47143 * 300.00090 * 9 8 7 12 12 C 1.50702 * 109.46845 * 179.97438 * 9 8 7 13 13 H 1.07999 * 120.00270 * 359.82142 * 12 9 8 14 14 C 1.37875 * 119.99768 * 179.82405 * 12 9 8 15 15 N 1.31510 * 120.00317 * 1.44904 * 14 12 9 16 16 Si 1.86805 * 119.99946 * 181.45399 * 14 12 9 17 17 H 1.48493 * 109.46912 * 269.99789 * 16 14 12 18 18 H 1.48501 * 109.47142 * 149.99466 * 16 14 12 19 19 H 1.48500 * 109.46952 * 29.99794 * 16 14 12 20 20 C 1.53110 * 109.16427 * 302.34375 * 5 4 3 21 21 C 1.46846 * 111.00126 * 235.79593 * 2 1 3 22 22 H 1.09003 * 109.46493 * 65.81549 * 21 2 1 23 23 C 1.50709 * 109.46209 * 305.85411 * 21 2 1 24 24 C 1.38240 * 119.99526 * 319.67215 * 23 21 2 25 25 C 1.38228 * 119.99821 * 179.74417 * 24 23 21 26 26 C 1.38244 * 119.99960 * 0.53085 * 25 24 23 27 27 C 1.38237 * 119.99538 * 359.74591 * 26 25 24 28 28 C 1.38228 * 120.00167 * 139.94768 * 23 21 2 29 29 H 1.09000 * 109.46861 * 184.20807 * 1 2 3 30 30 H 1.08996 * 109.46741 * 304.20274 * 1 2 3 31 31 H 1.09000 * 109.47382 * 64.20927 * 1 2 3 32 32 H 1.09000 * 109.46169 * 294.17898 * 3 2 1 33 33 H 1.09004 * 109.45920 * 54.14888 * 3 2 1 34 34 H 1.09000 * 109.50707 * 299.23666 * 4 3 2 35 35 H 1.09003 * 109.49846 * 179.12402 * 4 3 2 36 36 H 1.00902 * 110.99753 * 38.63961 * 7 5 4 37 37 H 1.08991 * 109.46894 * 59.99798 * 8 7 5 38 38 H 1.09000 * 109.46874 * 300.00225 * 8 7 5 39 39 H 1.09007 * 109.46781 * 172.73157 * 10 9 8 40 40 H 1.08997 * 109.47410 * 292.73733 * 10 9 8 41 41 H 1.09002 * 109.47186 * 52.74249 * 10 9 8 42 42 H 1.08994 * 109.47165 * 307.64421 * 11 9 8 43 43 H 1.08998 * 109.47082 * 67.65046 * 11 9 8 44 44 H 1.09007 * 109.46817 * 187.64600 * 11 9 8 45 45 H 0.97005 * 120.00168 * 357.01717 * 15 14 12 46 46 H 1.09002 * 109.50857 * 177.59491 * 20 5 4 47 47 H 1.08998 * 109.50438 * 297.67505 * 20 5 4 48 48 H 1.07998 * 119.99841 * 359.97438 * 24 23 21 49 49 H 1.07997 * 120.00107 * 180.29547 * 25 24 23 50 50 H 1.07997 * 119.99673 * 179.77034 * 26 25 24 51 51 H 1.08002 * 119.99341 * 180.02562 * 27 26 25 52 52 H 1.08003 * 120.00283 * 359.97438 * 28 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3710 0.0000 4 6 3.5181 1.3342 0.1467 5 6 4.1187 0.5371 -1.0145 6 1 3.8896 1.0352 -1.9566 7 7 5.5756 0.4489 -0.8476 8 6 6.2423 1.6320 -1.4078 9 6 7.7547 1.5041 -1.2150 10 6 8.2559 0.2489 -1.9320 11 6 8.0715 1.3993 0.2782 12 6 8.4387 2.7176 -1.7902 13 1 7.8536 3.5001 -2.2501 14 6 9.8117 2.8286 -1.7294 15 7 10.5265 1.8627 -1.1951 16 14 10.6565 4.3512 -2.4058 17 1 10.9856 4.1394 -3.8383 18 1 11.9052 4.6045 -1.6431 19 1 9.7501 5.5201 -2.2737 20 6 3.5182 -0.8713 -1.0210 21 6 1.9953 -0.7706 -1.1338 22 1 1.7324 -0.2707 -2.0661 23 6 1.3982 -2.1544 -1.1208 24 6 1.2360 -2.8258 0.0767 25 6 0.6835 -4.0928 0.0892 26 6 0.3034 -4.6929 -1.0967 27 6 0.4709 -4.0237 -2.2947 28 6 1.0181 -2.7543 -2.3066 29 1 -0.3633 -1.0249 0.0754 30 1 -0.3633 0.5777 0.8499 31 1 -0.3634 0.4471 -0.9253 32 1 1.7324 1.8609 -0.9376 33 1 1.5634 1.9257 0.8331 34 1 3.7814 0.8568 1.0905 35 1 3.9098 2.3513 0.1310 36 1 5.8213 0.3208 0.1226 37 1 5.8855 2.5261 -0.8967 38 1 6.0162 1.7069 -2.4714 39 1 9.3454 0.2258 -1.9052 40 1 7.8612 -0.6364 -1.4335 41 1 7.9183 0.2632 -2.9684 42 1 7.5976 2.2249 0.8090 43 1 7.6921 0.4533 0.6645 44 1 9.1507 1.4449 0.4247 45 1 10.0856 1.0918 -0.8048 46 1 3.9099 -1.4301 -1.8710 47 1 3.7820 -1.3837 -0.0959 48 1 1.5375 -2.3589 1.0027 49 1 0.5524 -4.6155 1.0251 50 1 -0.1249 -5.6843 -1.0872 51 1 0.1735 -4.4923 -3.2211 52 1 1.1486 -2.2314 -3.2425 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414163400.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:09:42 Heat of formation + Delta-G solvation = 13.964495 kcal Electronic energy + Delta-G solvation = -27214.651079 eV Core-core repulsion = 23791.888661 eV Total energy + Delta-G solvation = -3422.762418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.16128 -39.54683 -38.59438 -36.29632 -33.50313 -33.42621 -31.75236 -31.12471 -30.00545 -27.80599 -27.61031 -26.96497 -25.05428 -24.56662 -23.62899 -23.17478 -21.76353 -20.86291 -20.43523 -18.79606 -17.82190 -16.83817 -16.58690 -16.28616 -15.99596 -15.78721 -15.64579 -15.42859 -15.30256 -14.94794 -14.72652 -14.53673 -14.20499 -14.15331 -13.80546 -13.57685 -13.48777 -13.28971 -13.09188 -13.07851 -12.83917 -12.49410 -12.46459 -12.38803 -12.38097 -12.17197 -12.04492 -11.91427 -11.84160 -11.65225 -11.49537 -11.44249 -11.10500 -10.35832 -10.26142 -9.76484 -9.56388 -9.35361 -9.17633 -8.33304 -6.19510 0.46041 0.55552 1.54631 1.62105 1.79083 2.61487 2.80521 2.93745 3.30282 3.33488 3.64248 3.79566 4.00926 4.02963 4.16150 4.23229 4.26056 4.30723 4.34088 4.39359 4.45241 4.47655 4.52418 4.57348 4.64533 4.67680 4.68117 4.76322 4.80269 4.83419 4.93869 4.97811 5.00286 5.02760 5.07606 5.13285 5.18589 5.21199 5.22440 5.26912 5.29919 5.34242 5.60453 5.67514 5.68640 5.73509 5.91415 6.07898 6.11255 6.13730 6.17844 6.26373 6.43250 6.55966 6.82365 7.58905 8.93309 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.022671 B = 0.002685 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.786771 B =10426.190138 C =10982.523930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.537 5.537 3 C 0.067 3.933 4 C -0.139 4.139 5 C 0.089 3.911 6 H 0.060 0.940 7 N -0.682 5.682 8 C 0.102 3.898 9 C 0.044 3.956 10 C -0.118 4.118 11 C -0.135 4.135 12 C -0.601 4.601 13 H 0.036 0.964 14 C -0.022 4.022 15 N -0.945 5.945 16 Si 1.106 2.894 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.277 1.277 20 C -0.081 4.081 21 C 0.133 3.867 22 H 0.042 0.958 23 C -0.086 4.086 24 C -0.102 4.102 25 C -0.131 4.131 26 C -0.127 4.127 27 C -0.128 4.128 28 C -0.129 4.129 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.022 0.978 32 H 0.031 0.969 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.058 0.942 36 H 0.340 0.660 37 H 0.011 0.989 38 H 0.043 0.957 39 H 0.035 0.965 40 H 0.042 0.958 41 H 0.020 0.980 42 H 0.030 0.970 43 H 0.045 0.955 44 H 0.041 0.959 45 H 0.279 0.721 46 H 0.061 0.939 47 H 0.066 0.934 48 H 0.126 0.874 49 H 0.137 0.863 50 H 0.141 0.859 51 H 0.138 0.862 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.361 -9.176 2.518 26.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.262 5.262 3 C -0.062 4.062 4 C -0.178 4.178 5 C -0.022 4.022 6 H 0.078 0.922 7 N -0.312 5.312 8 C -0.027 4.027 9 C 0.044 3.956 10 C -0.176 4.176 11 C -0.193 4.193 12 C -0.640 4.640 13 H 0.054 0.946 14 C -0.221 4.221 15 N -0.586 5.586 16 Si 0.930 3.070 17 H -0.206 1.206 18 H -0.211 1.211 19 H -0.202 1.202 20 C -0.119 4.119 21 C 0.024 3.976 22 H 0.060 0.940 23 C -0.086 4.086 24 C -0.120 4.120 25 C -0.149 4.149 26 C -0.145 4.145 27 C -0.145 4.145 28 C -0.147 4.147 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.159 0.841 37 H 0.029 0.971 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.061 0.939 41 H 0.039 0.961 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.143 0.857 49 H 0.155 0.845 50 H 0.158 0.842 51 H 0.156 0.844 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -22.624 -9.090 2.126 24.474 hybrid contribution -1.578 0.575 0.010 1.680 sum -24.202 -8.515 2.136 25.745 Atomic orbital electron populations 1.22410 0.86342 1.02755 1.00722 1.61917 1.08380 1.13322 1.42537 1.21981 0.94321 0.88917 1.00964 1.22238 0.95773 1.00250 0.99548 1.21611 0.87166 0.95878 0.97510 0.92207 1.60583 1.06645 1.40435 1.23571 1.21665 0.94268 0.89483 0.97284 1.18315 0.91539 0.93550 0.92242 1.21707 0.99973 0.97712 0.98257 1.21891 1.01067 0.98376 0.97929 1.22237 0.94575 1.05823 1.41339 0.94557 1.26803 0.95584 1.03961 0.95749 1.70877 1.40029 1.10098 1.37631 0.83070 0.75080 0.72663 0.76200 1.20568 1.21147 1.20183 1.21435 0.92157 0.95949 1.02365 1.20443 0.94083 0.90995 0.92052 0.94012 1.19743 0.99452 0.95411 0.94001 1.21108 0.98353 0.94665 0.97881 1.21448 0.99011 0.95216 0.99178 1.21464 0.99895 1.00696 0.92416 1.21362 0.99415 0.94645 0.99120 1.21211 0.99561 0.96361 0.97606 0.90995 0.90297 0.95897 0.95044 0.89269 0.91065 0.92310 0.84117 0.97115 0.93813 0.94583 0.93854 0.96058 0.95074 0.93616 0.94025 0.90575 0.91982 0.91565 0.85652 0.84493 0.84157 0.84402 0.85915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.10 127.69 1.16 1.59 16 2 N -0.54 -10.82 4.11 -901.56 -3.71 -14.53 16 3 C 0.07 1.37 5.46 86.32 0.47 1.84 16 4 C -0.14 -3.42 5.35 30.64 0.16 -3.25 16 5 C 0.09 2.49 2.53 44.99 0.11 2.61 16 6 H 0.06 1.80 7.80 -2.38 -0.02 1.78 16 7 N -0.68 -23.32 5.61 -491.17 -2.76 -26.08 16 8 C 0.10 4.22 4.38 86.30 0.38 4.59 16 9 C 0.04 2.14 0.57 -52.93 -0.03 2.11 16 10 C -0.12 -5.77 7.90 71.98 0.57 -5.21 16 11 C -0.13 -6.22 7.61 71.98 0.55 -5.67 16 12 C -0.60 -33.27 8.01 25.60 0.21 -33.06 16 13 H 0.04 2.02 7.74 -2.91 -0.02 2.00 16 14 C -0.02 -1.24 5.10 84.65 0.43 -0.81 16 15 N -0.94 -56.14 12.12 21.45 0.26 -55.88 16 16 Si 1.11 50.63 29.90 68.60 2.05 52.68 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 18 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 20 C -0.08 -2.05 4.96 30.64 0.15 -1.90 16 21 C 0.13 2.90 2.04 44.19 0.09 2.99 16 22 H 0.04 0.95 8.00 -2.39 -0.02 0.93 16 23 C -0.09 -1.76 3.76 -19.86 -0.07 -1.83 16 24 C -0.10 -1.98 7.93 22.27 0.18 -1.80 16 25 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 26 C -0.13 -1.94 10.05 22.27 0.22 -1.71 16 27 C -0.13 -2.08 10.05 22.27 0.22 -1.86 16 28 C -0.13 -2.46 9.67 22.27 0.22 -2.25 16 29 H 0.07 1.24 5.96 -2.39 -0.01 1.22 16 30 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 31 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.09 1.59 8.09 -2.38 -0.02 1.57 16 34 H 0.07 1.78 8.10 -2.39 -0.02 1.76 16 35 H 0.06 1.56 7.54 -2.39 -0.02 1.54 16 36 H 0.34 11.42 6.66 -89.69 -0.60 10.83 16 37 H 0.01 0.45 7.51 -2.39 -0.02 0.43 16 38 H 0.04 1.90 8.06 -2.39 -0.02 1.88 16 39 H 0.04 1.93 5.19 -2.38 -0.01 1.92 16 40 H 0.04 1.91 7.80 -2.39 -0.02 1.90 16 41 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.03 1.37 8.13 -2.39 -0.02 1.35 16 43 H 0.04 1.85 6.94 -2.39 -0.02 1.83 16 44 H 0.04 2.15 5.25 -2.38 -0.01 2.14 16 45 H 0.28 16.29 3.56 -92.70 -0.33 15.96 16 46 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 47 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.13 2.50 7.73 -2.91 -0.02 2.48 16 49 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 50 H 0.14 1.46 8.06 -2.91 -0.02 1.43 16 51 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 52 H 0.12 2.14 8.04 -2.91 -0.02 2.12 16 Total: -1.00 -61.32 388.66 1.80 -59.51 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.71 Total: 29.86 kcal Atomic # 6 Polarization: -50.81 SS G_CDS: 5.24 Total: -45.57 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -6.20 Total: -96.49 kcal Atomic # 14 Polarization: 50.63 SS G_CDS: 2.05 Total: 52.68 kcal Total: -61.32 1.80 -59.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414163400.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.479 kcal (2) G-P(sol) polarization free energy of solvation -61.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds