Wall clock time and date at job start Tue Mar 31 2020 11:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00626 * 2 1 4 4 C 1.50707 * 109.46835 * 66.04648 * 3 2 1 5 5 C 1.38633 * 119.74579 * 269.73235 * 4 3 2 6 6 C 1.37628 * 120.24158 * 179.72559 * 5 4 3 7 7 C 1.40711 * 119.74557 * 0.56636 * 6 5 4 8 8 C 1.41397 * 120.24438 * 179.68692 * 7 6 5 9 9 H 1.07995 * 120.00072 * 161.86972 * 8 7 6 10 10 C 1.39942 * 119.99804 * 341.86778 * 8 7 6 11 11 N 1.30824 * 120.00087 * 328.76952 * 10 8 7 12 12 Si 1.86800 * 120.00085 * 148.77293 * 10 8 7 13 13 H 1.48498 * 109.47166 * 94.98472 * 12 10 8 14 14 H 1.48499 * 109.47281 * 214.99244 * 12 10 8 15 15 H 1.48503 * 109.46744 * 334.99023 * 12 10 8 16 16 C 1.40717 * 119.51264 * 359.70726 * 7 6 5 17 17 C 1.37618 * 119.74158 * 359.97438 * 16 7 6 18 18 C 1.46906 * 110.99615 * 236.04655 * 2 1 3 19 19 C 1.53006 * 109.46861 * 177.93432 * 18 2 1 20 20 C 1.53001 * 109.46851 * 57.93381 * 18 2 1 21 21 C 1.52997 * 109.47307 * 297.93017 * 18 2 1 22 22 N 1.46899 * 109.47595 * 297.26017 * 21 18 2 23 23 C 1.48541 * 111.00060 * 59.32496 * 22 21 18 24 24 C 1.54930 * 103.22857 * 159.72494 * 23 22 21 25 25 C 1.54601 * 102.92324 * 322.58896 * 24 23 22 26 26 C 1.47898 * 111.00392 * 176.72279 * 22 21 18 27 27 H 1.08997 * 109.47238 * 184.50422 * 1 2 3 28 28 H 1.09003 * 109.46820 * 304.49695 * 1 2 3 29 29 H 1.08995 * 109.47076 * 64.49648 * 1 2 3 30 30 H 1.08998 * 109.47695 * 186.04972 * 3 2 1 31 31 H 1.08999 * 109.46968 * 306.05257 * 3 2 1 32 32 H 1.07993 * 119.88328 * 359.97438 * 5 4 3 33 33 H 1.08002 * 120.12597 * 180.27490 * 6 5 4 34 34 H 0.97003 * 119.99683 * 179.97438 * 11 10 8 35 35 H 1.07997 * 120.13080 * 179.97438 * 16 7 6 36 36 H 1.08001 * 119.87343 * 180.02562 * 17 16 7 37 37 H 1.09004 * 109.46703 * 180.02562 * 19 18 2 38 38 H 1.09002 * 109.46870 * 299.99989 * 19 18 2 39 39 H 1.08999 * 109.47454 * 60.00237 * 19 18 2 40 40 H 1.08994 * 109.47141 * 294.38576 * 20 18 2 41 41 H 1.08994 * 109.47088 * 54.39202 * 20 18 2 42 42 H 1.09008 * 109.46823 * 174.38766 * 20 18 2 43 43 H 1.09009 * 109.46553 * 57.25596 * 21 18 2 44 44 H 1.08995 * 109.47302 * 177.25579 * 21 18 2 45 45 H 1.09004 * 110.66746 * 278.15847 * 23 22 21 46 46 H 1.08994 * 110.66417 * 41.28789 * 23 22 21 47 47 H 1.08994 * 110.72627 * 204.22774 * 24 23 22 48 48 H 1.08997 * 110.72493 * 80.94402 * 24 23 22 49 49 H 1.08997 * 110.30604 * 263.04581 * 25 24 23 50 50 H 1.08994 * 110.39594 * 140.91736 * 25 24 23 51 51 H 1.09004 * 109.91478 * 333.51036 * 26 22 21 52 52 H 1.08996 * 109.91592 * 94.60400 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.6371 2.0470 1.2985 5 6 0.4492 2.7544 1.4008 6 6 0.1090 3.3707 2.5834 7 6 0.9778 3.2907 3.6875 8 6 0.6419 3.9254 4.9055 9 1 1.1368 3.6347 5.8203 10 6 -0.3318 4.9303 4.9255 11 7 -0.4952 5.7037 3.8832 12 14 -1.3983 5.1674 6.4408 13 1 -0.8034 6.2179 7.3053 14 1 -2.7627 5.5815 6.0259 15 1 -1.4765 3.8909 7.1956 16 6 2.1835 2.5747 3.5703 17 6 2.5001 1.9608 2.3800 18 6 1.9954 -0.7660 -1.1377 19 6 3.5240 -0.7003 -1.1332 20 6 1.4631 -0.1712 -2.4430 21 6 1.5473 -2.2243 -1.0217 22 7 2.1126 -2.8147 0.1989 23 6 1.6702 -2.0693 1.4051 24 6 1.8934 -3.0865 2.5522 25 6 1.4991 -4.4327 1.9022 26 6 1.6371 -4.2027 0.3857 27 1 -0.3633 -1.0245 0.0807 28 1 -0.3633 0.5821 0.8470 29 1 -0.3633 0.4425 -0.9275 30 1 3.0798 1.3443 -0.1083 31 1 1.5612 1.9273 -0.8308 32 1 -0.2136 2.8188 0.5506 33 1 -0.8190 3.9175 2.6624 34 1 -1.1704 6.4000 3.8970 35 1 2.8578 2.5072 4.4111 36 1 3.4247 1.4104 2.2878 37 1 3.9145 -1.2683 -1.9776 38 1 3.8432 0.3387 -1.2158 39 1 3.9032 -1.1241 -0.2033 40 1 0.3828 -0.3078 -2.4906 41 1 1.6967 0.8928 -2.4792 42 1 1.9307 -0.6749 -3.2890 43 1 0.4591 -2.2674 -0.9757 44 1 1.8967 -2.7820 -1.8905 45 1 2.2833 -1.1805 1.5545 46 1 0.6163 -1.8024 1.3272 47 1 1.2442 -2.8621 3.3985 48 1 2.9391 -3.0982 2.8593 49 1 0.4696 -4.6872 2.1540 50 1 2.1743 -5.2239 2.2278 51 1 0.6695 -4.3321 -0.0991 52 1 2.3594 -4.9024 -0.0347 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000419371365.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:33 Heat of formation + Delta-G solvation = 40.036916 kcal Electronic energy + Delta-G solvation = -28015.661675 eV Core-core repulsion = 24594.029843 eV Total energy + Delta-G solvation = -3421.631833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.95422 -37.90220 -36.95799 -34.02574 -32.69740 -30.84843 -30.10827 -29.27722 -28.59570 -27.93187 -26.51230 -25.25304 -24.77444 -22.86516 -20.91492 -20.86458 -20.62085 -19.70432 -18.33344 -17.29361 -16.37505 -15.81183 -15.41643 -15.27926 -14.77402 -14.46046 -14.05446 -13.97984 -13.66649 -13.38085 -13.31868 -12.96023 -12.71607 -12.52569 -12.19183 -12.03244 -11.97395 -11.91054 -11.70996 -11.54138 -11.34689 -11.17986 -11.15915 -11.07765 -10.93847 -10.86461 -10.77088 -10.66164 -10.53540 -10.33768 -10.32514 -10.18613 -9.51414 -9.36929 -8.95352 -8.13858 -7.71480 -7.38353 -7.32221 -6.88926 -4.28539 2.75524 3.05309 3.07869 3.13015 3.22894 3.90611 4.16693 4.27544 4.63294 4.76495 4.87081 5.02802 5.05680 5.17447 5.31880 5.44291 5.53891 5.55993 5.59840 5.65775 5.73940 5.76071 5.83168 5.84966 5.86336 5.94372 5.99434 6.05696 6.06642 6.09401 6.14856 6.19039 6.26403 6.38383 6.41333 6.46427 6.47805 6.49981 6.61959 6.81202 6.98361 7.05206 7.19686 7.27535 7.29856 7.40997 7.52006 7.56497 7.64544 7.95365 8.07295 8.20367 8.32337 8.64570 8.90315 9.01945 10.06226 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016660 B = 0.003521 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.230977 B = 7950.431254 C = 8823.803305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.514 5.514 3 C 0.113 3.887 4 C -0.214 4.214 5 C -0.087 4.087 6 C -0.183 4.183 7 C 0.115 3.885 8 C -0.468 4.468 9 H 0.079 0.921 10 C 0.088 3.912 11 N -0.772 5.772 12 Si 0.895 3.105 13 H -0.270 1.270 14 H -0.275 1.275 15 H -0.258 1.258 16 C -0.235 4.235 17 C -0.062 4.062 18 C 0.105 3.895 19 C -0.131 4.131 20 C -0.179 4.179 21 C 0.063 3.937 22 N -0.509 5.509 23 C 0.051 3.949 24 C -0.133 4.133 25 C -0.130 4.130 26 C 0.034 3.966 27 H 0.056 0.944 28 H 0.082 0.918 29 H 0.020 0.980 30 H 0.071 0.929 31 H 0.022 0.978 32 H 0.079 0.921 33 H 0.106 0.894 34 H 0.282 0.718 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.049 0.951 38 H 0.052 0.948 39 H 0.076 0.924 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.032 0.968 44 H 0.069 0.931 45 H 0.113 0.887 46 H 0.048 0.952 47 H 0.066 0.934 48 H 0.068 0.932 49 H 0.060 0.940 50 H 0.064 0.936 51 H 0.035 0.965 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.618 -13.469 -8.512 16.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.237 5.237 3 C -0.013 4.013 4 C -0.215 4.215 5 C -0.106 4.106 6 C -0.202 4.202 7 C 0.113 3.887 8 C -0.496 4.496 9 H 0.097 0.903 10 C -0.133 4.133 11 N -0.396 5.396 12 Si 0.718 3.282 13 H -0.195 1.195 14 H -0.200 1.200 15 H -0.182 1.182 16 C -0.255 4.255 17 C -0.081 4.081 18 C 0.015 3.985 19 C -0.189 4.189 20 C -0.239 4.239 21 C -0.066 4.066 22 N -0.233 5.233 23 C -0.076 4.076 24 C -0.172 4.172 25 C -0.168 4.168 26 C -0.094 4.094 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.038 0.962 30 H 0.089 0.911 31 H 0.040 0.960 32 H 0.098 0.902 33 H 0.124 0.876 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.050 0.950 44 H 0.087 0.913 45 H 0.131 0.869 46 H 0.066 0.934 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.078 0.922 50 H 0.083 0.917 51 H 0.053 0.947 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.226 -13.467 -8.261 15.955 hybrid contribution -1.910 0.581 -0.153 2.002 sum 0.317 -12.886 -8.415 15.393 Atomic orbital electron populations 1.22568 0.88603 1.00948 1.01108 1.62751 1.07126 1.14427 1.39417 1.20858 0.98916 0.86370 0.95111 1.18766 0.98857 1.08709 0.95181 1.20446 0.95549 0.98118 0.96478 1.21087 1.00702 1.04783 0.93621 1.17536 0.89558 0.89245 0.92376 1.19561 1.18504 1.16316 0.95266 0.90302 1.25921 0.96393 0.93777 0.97256 1.69933 1.27030 1.11688 1.30911 0.86528 0.79576 0.79728 0.82338 1.19512 1.19963 1.18162 1.20863 0.98522 1.08945 0.97137 1.20286 0.97094 0.97663 0.93074 1.21083 0.96001 0.92568 0.88893 1.21818 0.93286 1.01062 1.02717 1.22449 1.01229 1.01754 0.98421 1.22270 0.96575 0.94213 0.93497 1.64774 1.54925 1.01048 1.02601 1.23548 1.00512 0.96810 0.86701 1.22632 1.01561 0.94484 0.98501 1.22369 1.00945 0.98582 0.94913 1.22838 0.98192 0.92180 0.96164 0.92579 0.89949 0.96205 0.91108 0.96005 0.90250 0.87570 0.90758 0.89340 0.89623 0.93172 0.92890 0.90548 0.92695 0.92044 0.92529 0.94999 0.91275 0.86883 0.93396 0.91515 0.91365 0.92162 0.91696 0.94710 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 7.42 60.06 0.45 0.68 16 2 N -0.51 -7.60 1.46 -228.59 -0.33 -7.94 16 3 C 0.11 1.92 4.30 -4.97 -0.02 1.89 16 4 C -0.21 -4.43 4.91 -104.33 -0.51 -4.94 16 5 C -0.09 -1.96 7.87 -39.66 -0.31 -2.27 16 6 C -0.18 -4.65 8.80 -38.87 -0.34 -4.99 16 7 C 0.12 3.04 5.61 -106.83 -0.60 2.44 16 8 C -0.47 -12.37 8.98 -37.74 -0.34 -12.71 16 9 H 0.08 2.02 8.01 -52.49 -0.42 1.60 16 10 C 0.09 2.17 4.86 -17.34 -0.08 2.09 16 11 N -0.77 -19.70 11.44 55.55 0.64 -19.06 16 12 Si 0.89 18.32 29.65 -169.99 -5.04 13.28 16 13 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 14 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 15 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 16 C -0.24 -5.72 9.80 -38.87 -0.38 -6.10 16 17 C -0.06 -1.36 9.67 -39.66 -0.38 -1.75 16 18 C 0.10 1.32 0.37 -131.60 -0.05 1.27 16 19 C -0.13 -1.63 7.89 37.16 0.29 -1.34 16 20 C -0.18 -2.09 7.71 37.16 0.29 -1.80 16 21 C 0.06 0.76 3.83 -3.83 -0.01 0.75 16 22 N -0.51 -6.46 4.46 -230.45 -1.03 -7.49 16 23 C 0.05 0.72 4.72 -1.90 -0.01 0.71 16 24 C -0.13 -1.69 7.06 -24.87 -0.18 -1.86 16 25 C -0.13 -1.40 6.93 -25.37 -0.18 -1.58 16 26 C 0.03 0.38 6.70 -2.75 -0.02 0.36 16 27 H 0.06 0.78 4.86 -51.93 -0.25 0.53 16 28 H 0.08 1.44 5.86 -51.93 -0.30 1.14 16 29 H 0.02 0.28 6.36 -51.93 -0.33 -0.05 16 30 H 0.07 1.16 5.59 -51.93 -0.29 0.87 16 31 H 0.02 0.37 6.77 -51.93 -0.35 0.02 16 32 H 0.08 1.66 7.98 -52.49 -0.42 1.24 16 33 H 0.11 2.81 6.22 -52.49 -0.33 2.48 16 34 H 0.28 6.48 8.30 -40.82 -0.34 6.15 16 35 H 0.09 2.06 8.06 -52.49 -0.42 1.64 16 36 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.67 6.11 -51.93 -0.32 0.35 16 39 H 0.08 1.05 7.50 -51.93 -0.39 0.66 16 40 H 0.05 0.64 6.68 -51.93 -0.35 0.29 16 41 H 0.06 0.77 6.53 -51.93 -0.34 0.43 16 42 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 43 H 0.03 0.40 6.17 -51.92 -0.32 0.08 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 45 H 0.11 1.87 6.65 -51.93 -0.35 1.52 16 46 H 0.05 0.73 5.17 -51.93 -0.27 0.46 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 48 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 50 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.03 0.38 7.68 -51.93 -0.40 -0.02 16 52 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 379.45 15.07 5.72 5.72 Total: -1.00 -25.55 379.45 -11.22 -36.78 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -8.78 Total: 7.87 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: -2.39 Total: -29.15 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: -0.73 Total: -34.49 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.04 Total: 13.28 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -25.55 -11.22 -36.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419371365.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.812 kcal (2) G-P(sol) polarization free energy of solvation -25.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds