Wall clock time and date at job start Tue Mar 31 2020 11:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00626 * 2 1 4 4 C 1.50707 * 109.46835 * 66.04648 * 3 2 1 5 5 C 1.38633 * 119.74579 * 269.73235 * 4 3 2 6 6 C 1.37628 * 120.24158 * 179.72559 * 5 4 3 7 7 C 1.40711 * 119.74557 * 0.56636 * 6 5 4 8 8 C 1.41397 * 120.24438 * 179.68692 * 7 6 5 9 9 H 1.07995 * 120.00072 * 161.86972 * 8 7 6 10 10 C 1.39942 * 119.99804 * 341.86778 * 8 7 6 11 11 N 1.30824 * 120.00087 * 328.76952 * 10 8 7 12 12 Si 1.86800 * 120.00085 * 148.77293 * 10 8 7 13 13 H 1.48498 * 109.47166 * 94.98472 * 12 10 8 14 14 H 1.48499 * 109.47281 * 214.99244 * 12 10 8 15 15 H 1.48503 * 109.46744 * 334.99023 * 12 10 8 16 16 C 1.40717 * 119.51264 * 359.70726 * 7 6 5 17 17 C 1.37618 * 119.74158 * 359.97438 * 16 7 6 18 18 C 1.46906 * 110.99615 * 236.04655 * 2 1 3 19 19 C 1.53006 * 109.46861 * 177.93432 * 18 2 1 20 20 C 1.53001 * 109.46851 * 57.93381 * 18 2 1 21 21 C 1.52997 * 109.47307 * 297.93017 * 18 2 1 22 22 N 1.46899 * 109.47595 * 297.26017 * 21 18 2 23 23 C 1.48541 * 111.00060 * 59.32496 * 22 21 18 24 24 C 1.54930 * 103.22857 * 159.72494 * 23 22 21 25 25 C 1.54601 * 102.92324 * 322.58896 * 24 23 22 26 26 C 1.47898 * 111.00392 * 176.72279 * 22 21 18 27 27 H 1.08997 * 109.47238 * 184.50422 * 1 2 3 28 28 H 1.09003 * 109.46820 * 304.49695 * 1 2 3 29 29 H 1.08995 * 109.47076 * 64.49648 * 1 2 3 30 30 H 1.08998 * 109.47695 * 186.04972 * 3 2 1 31 31 H 1.08999 * 109.46968 * 306.05257 * 3 2 1 32 32 H 1.07993 * 119.88328 * 359.97438 * 5 4 3 33 33 H 1.08002 * 120.12597 * 180.27490 * 6 5 4 34 34 H 0.97003 * 119.99683 * 179.97438 * 11 10 8 35 35 H 1.07997 * 120.13080 * 179.97438 * 16 7 6 36 36 H 1.08001 * 119.87343 * 180.02562 * 17 16 7 37 37 H 1.09004 * 109.46703 * 180.02562 * 19 18 2 38 38 H 1.09002 * 109.46870 * 299.99989 * 19 18 2 39 39 H 1.08999 * 109.47454 * 60.00237 * 19 18 2 40 40 H 1.08994 * 109.47141 * 294.38576 * 20 18 2 41 41 H 1.08994 * 109.47088 * 54.39202 * 20 18 2 42 42 H 1.09008 * 109.46823 * 174.38766 * 20 18 2 43 43 H 1.09009 * 109.46553 * 57.25596 * 21 18 2 44 44 H 1.08995 * 109.47302 * 177.25579 * 21 18 2 45 45 H 1.09004 * 110.66746 * 278.15847 * 23 22 21 46 46 H 1.08994 * 110.66417 * 41.28789 * 23 22 21 47 47 H 1.08994 * 110.72627 * 204.22774 * 24 23 22 48 48 H 1.08997 * 110.72493 * 80.94402 * 24 23 22 49 49 H 1.08997 * 110.30604 * 263.04581 * 25 24 23 50 50 H 1.08994 * 110.39594 * 140.91736 * 25 24 23 51 51 H 1.09004 * 109.91478 * 333.51036 * 26 22 21 52 52 H 1.08996 * 109.91592 * 94.60400 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3713 0.0000 4 6 1.6371 2.0470 1.2985 5 6 0.4492 2.7544 1.4008 6 6 0.1090 3.3707 2.5834 7 6 0.9778 3.2907 3.6875 8 6 0.6419 3.9254 4.9055 9 1 1.1368 3.6347 5.8203 10 6 -0.3318 4.9303 4.9255 11 7 -0.4952 5.7037 3.8832 12 14 -1.3983 5.1674 6.4408 13 1 -0.8034 6.2179 7.3053 14 1 -2.7627 5.5815 6.0259 15 1 -1.4765 3.8909 7.1956 16 6 2.1835 2.5747 3.5703 17 6 2.5001 1.9608 2.3800 18 6 1.9954 -0.7660 -1.1377 19 6 3.5240 -0.7003 -1.1332 20 6 1.4631 -0.1712 -2.4430 21 6 1.5473 -2.2243 -1.0217 22 7 2.1126 -2.8147 0.1989 23 6 1.6702 -2.0693 1.4051 24 6 1.8934 -3.0865 2.5522 25 6 1.4991 -4.4327 1.9022 26 6 1.6371 -4.2027 0.3857 27 1 -0.3633 -1.0245 0.0807 28 1 -0.3633 0.5821 0.8470 29 1 -0.3633 0.4425 -0.9275 30 1 3.0798 1.3443 -0.1083 31 1 1.5612 1.9273 -0.8308 32 1 -0.2136 2.8188 0.5506 33 1 -0.8190 3.9175 2.6624 34 1 -1.1704 6.4000 3.8970 35 1 2.8578 2.5072 4.4111 36 1 3.4247 1.4104 2.2878 37 1 3.9145 -1.2683 -1.9776 38 1 3.8432 0.3387 -1.2158 39 1 3.9032 -1.1241 -0.2033 40 1 0.3828 -0.3078 -2.4906 41 1 1.6967 0.8928 -2.4792 42 1 1.9307 -0.6749 -3.2890 43 1 0.4591 -2.2674 -0.9757 44 1 1.8967 -2.7820 -1.8905 45 1 2.2833 -1.1805 1.5545 46 1 0.6163 -1.8024 1.3272 47 1 1.2442 -2.8621 3.3985 48 1 2.9391 -3.0982 2.8593 49 1 0.4696 -4.6872 2.1540 50 1 2.1743 -5.2239 2.2278 51 1 0.6695 -4.3321 -0.0991 52 1 2.3594 -4.9024 -0.0347 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419371365.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:32 Heat of formation + Delta-G solvation = 29.476346 kcal Electronic energy + Delta-G solvation = -28016.119616 eV Core-core repulsion = 24594.029843 eV Total energy + Delta-G solvation = -3422.089773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.07398 -39.42110 -38.28746 -35.77044 -34.03185 -32.00774 -31.59682 -31.12168 -29.61024 -29.27461 -27.77688 -26.52100 -25.98537 -24.35347 -22.75598 -22.11665 -21.52868 -21.29986 -19.43016 -19.20262 -17.50956 -17.07388 -16.81038 -16.42959 -16.23780 -15.83930 -15.69324 -15.08119 -14.97120 -14.82669 -14.59173 -14.26872 -13.99142 -13.84845 -13.75814 -13.32294 -13.23283 -13.17994 -12.94498 -12.86365 -12.71853 -12.62401 -12.36890 -12.32089 -12.24131 -12.18648 -12.05328 -11.86790 -11.86191 -11.71031 -11.36209 -11.26895 -11.23300 -11.17040 -10.81804 -9.33731 -9.22662 -9.13876 -8.82079 -8.73231 -6.24643 0.99674 1.21598 1.36262 1.46324 1.56543 2.18966 2.62127 3.15576 3.25271 3.77647 3.86296 3.94179 4.04968 4.12364 4.20611 4.25525 4.32627 4.35844 4.50160 4.52479 4.61091 4.65272 4.68269 4.70917 4.76549 4.80862 4.83507 4.84366 4.95520 5.00111 5.04595 5.07115 5.08885 5.11235 5.13363 5.17334 5.20962 5.29640 5.34040 5.40352 5.42004 5.53024 5.57432 5.67935 5.74474 6.04093 6.13085 6.16092 6.21770 6.30702 6.37271 6.43531 6.47245 6.73723 6.96824 7.10387 8.23800 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.016660 B = 0.003521 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.230977 B = 7950.431254 C = 8823.803305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.516 5.516 3 C 0.122 3.878 4 C -0.196 4.196 5 C -0.086 4.086 6 C -0.207 4.207 7 C 0.085 3.915 8 C -0.511 4.511 9 H 0.072 0.928 10 C 0.050 3.950 11 N -0.806 5.806 12 Si 0.969 3.031 13 H -0.259 1.259 14 H -0.264 1.264 15 H -0.260 1.260 16 C -0.253 4.253 17 C -0.063 4.063 18 C 0.105 3.895 19 C -0.127 4.127 20 C -0.175 4.175 21 C 0.066 3.934 22 N -0.514 5.514 23 C 0.057 3.943 24 C -0.135 4.135 25 C -0.125 4.125 26 C 0.034 3.966 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.028 0.972 30 H 0.081 0.919 31 H 0.026 0.974 32 H 0.095 0.905 33 H 0.088 0.912 34 H 0.290 0.710 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.067 0.933 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.029 0.971 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.034 0.966 47 H 0.060 0.940 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.078 0.922 51 H 0.040 0.960 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.747 -15.320 -10.027 18.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.240 5.240 3 C -0.004 4.004 4 C -0.198 4.198 5 C -0.105 4.105 6 C -0.226 4.226 7 C 0.083 3.917 8 C -0.539 4.539 9 H 0.091 0.909 10 C -0.168 4.168 11 N -0.430 5.430 12 Si 0.789 3.211 13 H -0.184 1.184 14 H -0.188 1.188 15 H -0.184 1.184 16 C -0.272 4.272 17 C -0.081 4.081 18 C 0.015 3.985 19 C -0.184 4.184 20 C -0.234 4.234 21 C -0.063 4.063 22 N -0.238 5.238 23 C -0.070 4.070 24 C -0.174 4.174 25 C -0.163 4.163 26 C -0.094 4.094 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.046 0.954 30 H 0.099 0.901 31 H 0.044 0.956 32 H 0.113 0.887 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.095 0.905 43 H 0.047 0.953 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.052 0.948 47 H 0.079 0.921 48 H 0.084 0.916 49 H 0.084 0.916 50 H 0.097 0.903 51 H 0.058 0.942 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.367 -15.329 -9.791 18.342 hybrid contribution -1.855 1.050 0.176 2.139 sum 0.512 -14.278 -9.615 17.222 Atomic orbital electron populations 1.22451 0.88716 1.01149 1.00151 1.62654 1.06985 1.13048 1.41289 1.20728 0.99660 0.87365 0.92694 1.19173 0.97300 1.06766 0.96517 1.20634 0.96396 0.97510 0.95945 1.21049 1.00430 1.06263 0.94857 1.17847 0.90563 0.90331 0.92968 1.19771 1.20862 1.18034 0.95242 0.90949 1.26709 0.96864 0.92795 1.00472 1.69949 1.27822 1.12280 1.32935 0.85412 0.77860 0.79561 0.78253 1.18402 1.18832 1.18417 1.21045 0.98244 1.09599 0.98336 1.20548 0.98086 0.97087 0.92418 1.21170 0.96174 0.92682 0.88433 1.21767 0.92913 1.01009 1.02704 1.22393 1.01348 1.01278 0.98349 1.22287 0.96394 0.93779 0.93811 1.64764 1.55128 1.01705 1.02184 1.23312 0.98983 0.96525 0.88198 1.22609 1.01314 0.95453 0.98008 1.22351 1.01628 0.97674 0.94605 1.22896 0.98830 0.91293 0.96345 0.91507 0.92873 0.95398 0.90069 0.95631 0.88700 0.89371 0.89885 0.89282 0.87281 0.91369 0.93233 0.92027 0.92686 0.92904 0.90547 0.95299 0.89484 0.89385 0.94779 0.92145 0.91636 0.91599 0.90338 0.94170 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 7.42 127.69 0.95 1.62 16 2 N -0.52 -14.54 1.46 -877.14 -1.28 -15.82 16 3 C 0.12 3.94 4.30 85.56 0.37 4.31 16 4 C -0.20 -8.09 4.91 -19.67 -0.10 -8.19 16 5 C -0.09 -3.94 7.87 22.22 0.17 -3.76 16 6 C -0.21 -10.97 8.80 22.73 0.20 -10.77 16 7 C 0.09 4.70 5.61 -21.29 -0.12 4.58 16 8 C -0.51 -28.29 8.98 23.46 0.21 -28.08 16 9 H 0.07 3.92 8.01 -2.91 -0.02 3.90 16 10 C 0.05 2.55 4.86 85.26 0.41 2.96 16 11 N -0.81 -42.47 11.44 21.83 0.25 -42.22 16 12 Si 0.97 38.45 29.65 68.60 2.03 40.49 16 13 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 14 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 15 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 16 C -0.25 -12.71 9.80 22.73 0.22 -12.49 16 17 C -0.06 -2.75 9.67 22.22 0.21 -2.54 16 18 C 0.10 2.38 0.37 3.53 0.00 2.38 16 19 C -0.13 -2.81 7.89 71.98 0.57 -2.24 16 20 C -0.17 -3.52 7.71 71.98 0.56 -2.97 16 21 C 0.07 1.40 3.83 86.30 0.33 1.73 16 22 N -0.51 -11.88 4.46 -883.02 -3.94 -15.82 16 23 C 0.06 1.57 4.72 86.65 0.41 1.98 16 24 C -0.14 -3.31 7.06 31.80 0.22 -3.08 16 25 C -0.12 -2.42 6.93 31.48 0.22 -2.20 16 26 C 0.03 0.67 6.70 86.45 0.58 1.24 16 27 H 0.07 1.79 4.86 -2.39 -0.01 1.78 16 28 H 0.05 1.86 5.86 -2.39 -0.01 1.84 16 29 H 0.03 0.75 6.36 -2.39 -0.02 0.74 16 30 H 0.08 2.49 5.59 -2.39 -0.01 2.48 16 31 H 0.03 0.82 6.77 -2.39 -0.02 0.81 16 32 H 0.09 3.97 7.98 -2.91 -0.02 3.94 16 33 H 0.09 4.91 6.22 -2.91 -0.02 4.90 16 34 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 35 H 0.09 4.33 8.06 -2.91 -0.02 4.30 16 36 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 37 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.05 1.13 6.11 -2.39 -0.01 1.11 16 39 H 0.06 1.57 7.50 -2.39 -0.02 1.55 16 40 H 0.05 1.12 6.68 -2.39 -0.02 1.10 16 41 H 0.05 1.17 6.53 -2.39 -0.02 1.15 16 42 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.03 0.64 6.17 -2.38 -0.01 0.63 16 44 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.09 2.86 6.65 -2.38 -0.02 2.85 16 46 H 0.03 1.01 5.17 -2.39 -0.01 1.00 16 47 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.04 0.75 7.68 -2.39 -0.02 0.73 16 52 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -57.17 379.45 3.38 -53.79 By element: Atomic # 1 Polarization: 34.21 SS G_CDS: 0.89 Total: 35.10 kcal Atomic # 6 Polarization: -60.94 SS G_CDS: 5.42 Total: -55.52 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: -4.97 Total: -73.86 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.49 kcal Total: -57.17 3.38 -53.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419371365.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.269 kcal (2) G-P(sol) polarization free energy of solvation -57.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds