Wall clock time and date at job start Tue Mar 31 2020 11:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46826 * 2 1 4 4 C 1.53003 * 109.47073 * 240.00365 * 2 1 3 5 5 C 1.52995 * 109.47522 * 119.99829 * 2 1 3 6 6 N 1.46898 * 109.47011 * 35.67591 * 5 2 1 7 7 C 1.46898 * 111.00390 * 288.31273 * 6 5 2 8 8 C 1.50706 * 109.47067 * 314.22214 * 7 6 5 9 9 H 1.08003 * 119.99672 * 4.71438 * 8 7 6 10 10 C 1.37872 * 120.00033 * 184.71096 * 8 7 6 11 11 N 1.31508 * 120.00159 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99800 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47253 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47138 * 119.99884 * 12 10 8 15 15 H 1.48498 * 109.46907 * 239.99800 * 12 10 8 16 16 C 1.46897 * 110.99848 * 52.26768 * 6 5 2 17 17 C 1.53001 * 109.47258 * 60.51813 * 16 6 5 18 18 N 1.46904 * 109.46811 * 180.02562 * 17 16 6 19 19 C 1.47909 * 111.00008 * 170.00287 * 18 17 16 20 20 C 1.54601 * 102.63046 * 94.65452 * 19 18 17 21 21 C 1.51579 * 102.81463 * 25.61245 * 20 19 18 22 22 C 1.37919 * 131.57149 * 163.76772 * 21 20 19 23 23 C 1.38307 * 120.08132 * 180.32406 * 22 21 20 24 24 C 1.38303 * 119.88367 * 359.97438 * 23 22 21 25 25 C 1.37909 * 120.26145 * 359.87277 * 24 23 22 26 26 C 1.38962 * 107.94488 * 343.80317 * 21 20 19 27 27 H 1.09004 * 109.47290 * 298.28601 * 1 2 3 28 28 H 1.08999 * 109.47647 * 58.29236 * 1 2 3 29 29 H 1.09007 * 109.46747 * 178.29166 * 1 2 3 30 30 H 1.08995 * 109.47032 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47037 * 300.00161 * 3 2 1 32 32 H 1.08996 * 109.47297 * 60.00068 * 3 2 1 33 33 H 1.09006 * 109.46614 * 323.23391 * 4 2 1 34 34 H 1.08997 * 109.47499 * 83.23411 * 4 2 1 35 35 H 1.08996 * 109.46883 * 203.23725 * 4 2 1 36 36 H 1.09004 * 109.47193 * 275.68063 * 5 2 1 37 37 H 1.08994 * 109.47457 * 155.67607 * 5 2 1 38 38 H 1.08997 * 109.47447 * 74.22056 * 7 6 5 39 39 H 1.09000 * 109.47547 * 194.22370 * 7 6 5 40 40 H 0.97001 * 119.99982 * 179.97438 * 11 10 8 41 41 H 1.09004 * 109.47455 * 300.51297 * 16 6 5 42 42 H 1.09009 * 109.47489 * 180.51963 * 16 6 5 43 43 H 1.08998 * 109.47011 * 60.00235 * 17 16 6 44 44 H 1.08996 * 109.46815 * 299.99833 * 17 16 6 45 45 H 1.08993 * 110.77981 * 212.94854 * 19 18 17 46 46 H 1.09001 * 110.77036 * 336.18554 * 19 18 17 47 47 H 1.08995 * 110.74193 * 143.93857 * 20 19 18 48 48 H 1.08999 * 110.74849 * 267.28296 * 20 19 18 49 49 H 1.08001 * 119.96047 * 0.28723 * 22 21 20 50 50 H 1.07997 * 120.05484 * 179.97438 * 23 22 21 51 51 H 1.07998 * 119.87089 * 179.89657 * 24 23 22 52 52 H 1.08000 * 119.89869 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2492 6 7 1.1426 -1.8390 1.5700 7 6 -0.1403 -1.3508 2.0931 8 6 0.1119 -0.2789 3.1220 9 1 1.1188 0.0644 3.3084 10 6 -0.9427 0.2634 3.8252 11 7 -2.1688 -0.1543 3.5979 12 14 -0.6301 1.5925 5.1001 13 1 0.8247 1.8835 5.1653 14 1 -1.3655 2.8255 4.7202 15 1 -1.1010 1.1248 6.4285 16 6 0.9393 -2.7034 0.3998 17 6 2.2838 -3.2804 -0.0478 18 7 2.0805 -4.1443 -1.2185 19 6 3.3738 -4.5290 -1.8244 20 6 3.6643 -5.8954 -1.1620 21 6 2.2794 -6.3969 -0.8044 22 6 1.8203 -7.6520 -0.4637 23 6 0.4800 -7.8476 -0.1838 24 6 -0.3995 -6.7820 -0.2458 25 6 0.0550 -5.5244 -0.5829 26 6 1.4048 -5.3187 -0.8643 27 1 -0.3634 0.4870 0.9050 28 1 -0.3634 0.5401 -0.8742 29 1 -0.3633 -1.0273 -0.0306 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.3848 -1.5624 -1.4761 34 1 2.0470 -0.0289 -2.0912 35 1 3.0513 -1.0862 -1.0706 36 1 2.0653 -0.0237 2.0865 37 1 3.0440 -1.1029 1.0639 38 1 -0.7324 -0.9382 1.2762 39 1 -0.6827 -2.1764 2.5540 40 1 -2.9107 0.2270 4.0929 41 1 0.5060 -2.1195 -0.4124 42 1 0.2638 -3.5176 0.6623 43 1 2.7170 -3.8643 0.7643 44 1 2.9592 -2.4663 -0.3105 45 1 3.2781 -4.6355 -2.9049 46 1 4.1481 -3.8032 -1.5760 47 1 4.1494 -6.5706 -1.8667 48 1 4.2722 -5.7687 -0.2661 49 1 2.5081 -8.4833 -0.4158 50 1 0.1209 -8.8307 0.0826 51 1 -1.4463 -6.9353 -0.0289 52 1 -0.6368 -4.6964 -0.6292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428229976.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:13 Heat of formation + Delta-G solvation = 103.808404 kcal Electronic energy + Delta-G solvation = -28471.663864 eV Core-core repulsion = 25052.797371 eV Total energy + Delta-G solvation = -3418.866493 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.89448 -39.37372 -36.68340 -33.77639 -33.09066 -31.96036 -30.24834 -29.05711 -28.25960 -27.66110 -26.38161 -25.88212 -24.78139 -23.04290 -22.30826 -21.21549 -20.65646 -19.87825 -18.30359 -16.64591 -16.54567 -15.86214 -15.58269 -15.45015 -15.09533 -14.75310 -14.47473 -13.89229 -13.73494 -13.48932 -13.30493 -13.17567 -12.84003 -12.67757 -12.60581 -12.26896 -12.21731 -11.90078 -11.76049 -11.53580 -11.31570 -11.11516 -11.01582 -10.88894 -10.77659 -10.73745 -10.64708 -10.52891 -10.32606 -9.96184 -9.90988 -9.53279 -9.44171 -9.23319 -8.83528 -8.71784 -8.41857 -7.81090 -6.76646 -6.01358 -4.00200 1.38426 1.46440 3.30221 3.38619 3.41630 3.64573 3.84726 4.43908 4.54326 4.71862 4.93614 5.03409 5.13173 5.15870 5.29429 5.36334 5.36984 5.45566 5.47613 5.51528 5.55147 5.59682 5.64836 5.71740 5.80744 5.87670 5.95917 6.08194 6.11528 6.14979 6.17531 6.24675 6.32685 6.33370 6.40098 6.46753 6.54662 6.57929 6.58741 6.62374 6.66145 6.82109 6.84932 6.90445 7.01854 7.09923 7.33418 7.38268 7.51684 7.57689 7.81647 8.14960 8.33647 8.66420 9.07108 9.62175 11.09609 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015130 B = 0.004086 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.205446 B = 6851.744100 C = 7997.912595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.094 4.094 3 C -0.134 4.134 4 C -0.153 4.153 5 C 0.063 3.937 6 N -0.532 5.532 7 C 0.147 3.853 8 C -0.506 4.506 9 H 0.065 0.935 10 C 0.058 3.942 11 N -0.895 5.895 12 Si 0.889 3.111 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.285 1.285 16 C 0.033 3.967 17 C 0.050 3.950 18 N -0.492 5.492 19 C 0.052 3.948 20 C -0.108 4.108 21 C -0.145 4.145 22 C -0.093 4.093 23 C -0.138 4.138 24 C -0.103 4.103 25 C -0.107 4.107 26 C 0.102 3.898 27 H 0.097 0.903 28 H 0.026 0.974 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.039 0.961 35 H 0.048 0.952 36 H 0.093 0.907 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.023 0.977 40 H 0.259 0.741 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.040 0.960 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.116 0.884 50 H 0.121 0.879 51 H 0.125 0.875 52 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.286 -9.938 -11.732 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.096 4.096 3 C -0.191 4.191 4 C -0.210 4.210 5 C -0.065 4.065 6 N -0.255 5.255 7 C 0.023 3.977 8 C -0.544 4.544 9 H 0.083 0.917 10 C -0.143 4.143 11 N -0.534 5.534 12 Si 0.717 3.283 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.211 1.211 16 C -0.095 4.095 17 C -0.074 4.074 18 N -0.210 5.210 19 C -0.076 4.076 20 C -0.146 4.146 21 C -0.148 4.148 22 C -0.112 4.112 23 C -0.156 4.156 24 C -0.122 4.122 25 C -0.127 4.127 26 C 0.005 3.995 27 H 0.115 0.885 28 H 0.045 0.955 29 H 0.093 0.907 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.111 0.889 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.041 0.959 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.111 0.889 45 H 0.104 0.896 46 H 0.101 0.899 47 H 0.100 0.900 48 H 0.097 0.903 49 H 0.134 0.866 50 H 0.139 0.861 51 H 0.143 0.857 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.048 -9.828 -11.643 17.721 hybrid contribution 0.131 0.723 0.737 1.041 sum 9.179 -9.105 -10.905 16.914 Atomic orbital electron populations 1.22939 0.94274 1.02512 1.02207 1.21182 0.96635 0.95390 0.96348 1.21825 0.99712 0.96226 1.01377 1.22574 1.00613 1.00653 0.97134 1.22409 0.94559 0.93276 0.96272 1.62292 1.17209 1.18673 1.27375 1.20835 0.85552 0.95367 0.95974 1.21320 0.93334 1.19455 1.20313 0.91696 1.24935 0.95156 0.97133 0.97078 1.69963 0.98624 1.42930 1.41914 0.86583 0.78285 0.81750 0.81668 1.19766 1.21183 1.21134 1.22625 0.95280 0.97384 0.94216 1.22634 0.99778 0.95677 0.89338 1.60145 1.17945 1.14477 1.28431 1.23117 0.89889 0.94861 0.99690 1.21660 0.94264 0.97582 1.01121 1.20969 0.95482 0.94936 1.03395 1.20328 0.95598 0.95446 0.99785 1.20994 0.93239 0.98972 1.02423 1.20953 0.99835 0.92266 0.99138 1.20645 0.93339 0.97563 1.01148 1.19556 0.93534 0.89768 0.96595 0.88469 0.95531 0.90725 0.93686 0.93795 0.92252 0.90576 0.94190 0.93283 0.88892 0.93622 0.93833 0.95917 0.93097 0.91871 0.91846 0.94172 0.88941 0.89581 0.89879 0.90022 0.90254 0.86623 0.86076 0.85673 0.85554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 6.18 37.16 0.23 -2.94 16 2 C -0.09 -1.60 0.77 -154.51 -0.12 -1.72 16 3 C -0.13 -2.11 8.23 37.16 0.31 -1.80 16 4 C -0.15 -2.26 7.13 37.16 0.26 -1.99 16 5 C 0.06 1.20 4.54 -3.83 -0.02 1.18 16 6 N -0.53 -11.09 4.90 -236.07 -1.16 -12.25 16 7 C 0.15 3.64 4.23 -4.97 -0.02 3.61 16 8 C -0.51 -13.45 7.35 -34.44 -0.25 -13.70 16 9 H 0.07 1.71 5.54 -52.48 -0.29 1.42 16 10 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 11 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 12 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 13 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 15 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 16 C 0.03 0.59 3.87 -3.83 -0.01 0.58 16 17 C 0.05 0.77 3.50 -3.82 -0.01 0.76 16 18 N -0.49 -6.78 5.00 -169.02 -0.85 -7.63 16 19 C 0.05 0.56 7.00 -2.43 -0.02 0.54 16 20 C -0.11 -1.13 6.97 -26.61 -0.19 -1.32 16 21 C -0.15 -1.87 6.23 -104.04 -0.65 -2.52 16 22 C -0.09 -1.10 10.03 -39.67 -0.40 -1.49 16 23 C -0.14 -1.59 10.06 -39.53 -0.40 -1.99 16 24 C -0.10 -1.30 10.02 -39.68 -0.40 -1.70 16 25 C -0.11 -1.54 8.55 -39.27 -0.34 -1.88 16 26 C 0.10 1.47 5.29 -83.40 -0.44 1.03 16 27 H 0.10 2.24 5.52 -51.93 -0.29 1.95 16 28 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 1.50 3.28 -51.92 -0.17 1.33 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.64 8.12 -51.92 -0.42 0.22 16 32 H 0.06 1.02 8.12 -51.93 -0.42 0.59 16 33 H 0.08 1.18 4.68 -51.93 -0.24 0.93 16 34 H 0.04 0.55 7.92 -51.93 -0.41 0.14 16 35 H 0.05 0.67 5.72 -51.93 -0.30 0.37 16 36 H 0.09 1.97 4.98 -51.93 -0.26 1.71 16 37 H 0.05 0.78 6.35 -51.93 -0.33 0.46 16 38 H 0.04 1.10 3.26 -61.14 -0.20 0.90 16 39 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.06 1.14 2.71 -51.93 -0.14 1.00 16 42 H 0.06 1.21 5.55 -51.92 -0.29 0.92 16 43 H 0.04 0.67 8.06 -51.93 -0.42 0.25 16 44 H 0.09 1.34 3.33 -51.93 -0.17 1.17 16 45 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.08 0.80 7.60 -51.93 -0.39 0.40 16 47 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 50 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 51 H 0.13 1.33 8.06 -52.49 -0.42 0.90 16 52 H 0.13 1.85 7.15 -52.49 -0.38 1.48 16 LS Contribution 368.65 15.07 5.56 5.56 Total: -1.00 -28.65 368.65 -11.35 -40.00 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -8.06 Total: 7.07 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: -2.56 Total: -23.86 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: -1.27 Total: -44.95 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.65 -11.35 -40.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428229976.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.805 kcal (2) G-P(sol) polarization free energy of solvation -28.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds