Wall clock time and date at job start Tue Mar 31 2020 11:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46826 * 2 1 4 4 C 1.53003 * 109.47073 * 240.00365 * 2 1 3 5 5 C 1.52995 * 109.47522 * 119.99829 * 2 1 3 6 6 N 1.46898 * 109.47011 * 35.67591 * 5 2 1 7 7 C 1.46898 * 111.00390 * 288.31273 * 6 5 2 8 8 C 1.50706 * 109.47067 * 314.22214 * 7 6 5 9 9 H 1.08003 * 119.99672 * 4.71438 * 8 7 6 10 10 C 1.37872 * 120.00033 * 184.71096 * 8 7 6 11 11 N 1.31508 * 120.00159 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99800 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47253 * 359.97438 * 12 10 8 14 14 H 1.48499 * 109.47138 * 119.99884 * 12 10 8 15 15 H 1.48498 * 109.46907 * 239.99800 * 12 10 8 16 16 C 1.46897 * 110.99848 * 52.26768 * 6 5 2 17 17 C 1.53001 * 109.47258 * 60.51813 * 16 6 5 18 18 N 1.46904 * 109.46811 * 180.02562 * 17 16 6 19 19 C 1.47909 * 111.00008 * 170.00287 * 18 17 16 20 20 C 1.54601 * 102.63046 * 94.65452 * 19 18 17 21 21 C 1.51579 * 102.81463 * 25.61245 * 20 19 18 22 22 C 1.37919 * 131.57149 * 163.76772 * 21 20 19 23 23 C 1.38307 * 120.08132 * 180.32406 * 22 21 20 24 24 C 1.38303 * 119.88367 * 359.97438 * 23 22 21 25 25 C 1.37909 * 120.26145 * 359.87277 * 24 23 22 26 26 C 1.38962 * 107.94488 * 343.80317 * 21 20 19 27 27 H 1.09004 * 109.47290 * 298.28601 * 1 2 3 28 28 H 1.08999 * 109.47647 * 58.29236 * 1 2 3 29 29 H 1.09007 * 109.46747 * 178.29166 * 1 2 3 30 30 H 1.08995 * 109.47032 * 180.02562 * 3 2 1 31 31 H 1.09007 * 109.47037 * 300.00161 * 3 2 1 32 32 H 1.08996 * 109.47297 * 60.00068 * 3 2 1 33 33 H 1.09006 * 109.46614 * 323.23391 * 4 2 1 34 34 H 1.08997 * 109.47499 * 83.23411 * 4 2 1 35 35 H 1.08996 * 109.46883 * 203.23725 * 4 2 1 36 36 H 1.09004 * 109.47193 * 275.68063 * 5 2 1 37 37 H 1.08994 * 109.47457 * 155.67607 * 5 2 1 38 38 H 1.08997 * 109.47447 * 74.22056 * 7 6 5 39 39 H 1.09000 * 109.47547 * 194.22370 * 7 6 5 40 40 H 0.97001 * 119.99982 * 179.97438 * 11 10 8 41 41 H 1.09004 * 109.47455 * 300.51297 * 16 6 5 42 42 H 1.09009 * 109.47489 * 180.51963 * 16 6 5 43 43 H 1.08998 * 109.47011 * 60.00235 * 17 16 6 44 44 H 1.08996 * 109.46815 * 299.99833 * 17 16 6 45 45 H 1.08993 * 110.77981 * 212.94854 * 19 18 17 46 46 H 1.09001 * 110.77036 * 336.18554 * 19 18 17 47 47 H 1.08995 * 110.74193 * 143.93857 * 20 19 18 48 48 H 1.08999 * 110.74849 * 267.28296 * 20 19 18 49 49 H 1.08001 * 119.96047 * 0.28723 * 22 21 20 50 50 H 1.07997 * 120.05484 * 179.97438 * 23 22 21 51 51 H 1.07998 * 119.87089 * 179.89657 * 24 23 22 52 52 H 1.08000 * 119.89869 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7212 1.2492 6 7 1.1426 -1.8390 1.5700 7 6 -0.1403 -1.3508 2.0931 8 6 0.1119 -0.2789 3.1220 9 1 1.1188 0.0644 3.3084 10 6 -0.9427 0.2634 3.8252 11 7 -2.1688 -0.1543 3.5979 12 14 -0.6301 1.5925 5.1001 13 1 0.8247 1.8835 5.1653 14 1 -1.3655 2.8255 4.7202 15 1 -1.1010 1.1248 6.4285 16 6 0.9393 -2.7034 0.3998 17 6 2.2838 -3.2804 -0.0478 18 7 2.0805 -4.1443 -1.2185 19 6 3.3738 -4.5290 -1.8244 20 6 3.6643 -5.8954 -1.1620 21 6 2.2794 -6.3969 -0.8044 22 6 1.8203 -7.6520 -0.4637 23 6 0.4800 -7.8476 -0.1838 24 6 -0.3995 -6.7820 -0.2458 25 6 0.0550 -5.5244 -0.5829 26 6 1.4048 -5.3187 -0.8643 27 1 -0.3634 0.4870 0.9050 28 1 -0.3634 0.5401 -0.8742 29 1 -0.3633 -1.0273 -0.0306 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.3848 -1.5624 -1.4761 34 1 2.0470 -0.0289 -2.0912 35 1 3.0513 -1.0862 -1.0706 36 1 2.0653 -0.0237 2.0865 37 1 3.0440 -1.1029 1.0639 38 1 -0.7324 -0.9382 1.2762 39 1 -0.6827 -2.1764 2.5540 40 1 -2.9107 0.2270 4.0929 41 1 0.5060 -2.1195 -0.4124 42 1 0.2638 -3.5176 0.6623 43 1 2.7170 -3.8643 0.7643 44 1 2.9592 -2.4663 -0.3105 45 1 3.2781 -4.6355 -2.9049 46 1 4.1481 -3.8032 -1.5760 47 1 4.1494 -6.5706 -1.8667 48 1 4.2722 -5.7687 -0.2661 49 1 2.5081 -8.4833 -0.4158 50 1 0.1209 -8.8307 0.0826 51 1 -1.4463 -6.9353 -0.0289 52 1 -0.6368 -4.6964 -0.6292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428229976.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:12 Heat of formation + Delta-G solvation = 87.422095 kcal Electronic energy + Delta-G solvation = -28472.374427 eV Core-core repulsion = 25052.797371 eV Total energy + Delta-G solvation = -3419.577057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.97501 -40.80958 -37.67027 -35.41815 -34.66384 -33.38870 -31.47807 -30.08346 -29.60162 -29.09808 -27.79216 -27.48111 -26.28616 -23.96266 -23.88151 -22.28098 -21.78495 -21.35528 -19.75504 -18.53002 -17.71517 -16.97003 -16.89254 -16.64270 -16.36792 -16.26559 -15.86397 -15.46862 -15.04039 -14.85446 -14.52536 -14.38954 -14.14719 -13.95094 -13.82490 -13.51957 -13.30002 -13.26148 -13.01405 -12.91168 -12.68627 -12.54945 -12.43864 -12.32667 -12.25639 -12.19506 -12.02134 -11.78934 -11.73398 -11.68996 -11.46961 -11.21669 -11.00526 -10.71750 -10.51951 -10.28081 -9.69901 -8.83033 -8.47198 -8.14061 -6.18841 0.40581 0.47544 1.39084 1.41053 1.52190 2.41751 2.63063 2.87673 3.19759 3.56285 3.65894 3.92116 3.94847 4.06331 4.10721 4.11417 4.13341 4.22327 4.25098 4.36842 4.54772 4.57706 4.62739 4.68669 4.69648 4.76678 4.79378 4.85638 4.90367 4.92177 4.95302 4.98777 5.03008 5.06195 5.12957 5.17552 5.22680 5.27522 5.33978 5.43972 5.49247 5.52689 5.54090 5.56089 5.61834 5.68874 5.74301 5.77035 5.86571 6.03195 6.14018 6.35807 6.49884 6.83513 6.99133 7.47786 8.97768 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015130 B = 0.004086 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.205446 B = 6851.744100 C = 7997.912595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.090 4.090 3 C -0.130 4.130 4 C -0.144 4.144 5 C 0.066 3.934 6 N -0.544 5.544 7 C 0.163 3.837 8 C -0.509 4.509 9 H 0.067 0.933 10 C 0.006 3.994 11 N -0.932 5.932 12 Si 0.954 3.046 13 H -0.263 1.263 14 H -0.281 1.281 15 H -0.285 1.285 16 C 0.041 3.959 17 C 0.070 3.930 18 N -0.499 5.499 19 C 0.049 3.951 20 C -0.103 4.103 21 C -0.154 4.154 22 C -0.098 4.098 23 C -0.136 4.136 24 C -0.116 4.116 25 C -0.132 4.132 26 C 0.075 3.925 27 H 0.055 0.945 28 H 0.040 0.960 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.037 0.963 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.041 0.959 39 H -0.024 1.024 40 H 0.260 0.740 41 H 0.065 0.935 42 H 0.041 0.959 43 H 0.023 0.977 44 H 0.106 0.894 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.106 0.894 48 H 0.081 0.919 49 H 0.143 0.857 50 H 0.149 0.851 51 H 0.137 0.863 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.168 -10.311 -13.070 20.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.092 4.092 3 C -0.188 4.188 4 C -0.200 4.200 5 C -0.062 4.062 6 N -0.267 5.267 7 C 0.037 3.963 8 C -0.547 4.547 9 H 0.085 0.915 10 C -0.192 4.192 11 N -0.573 5.573 12 Si 0.780 3.220 13 H -0.187 1.187 14 H -0.207 1.207 15 H -0.211 1.211 16 C -0.087 4.087 17 C -0.056 4.056 18 N -0.217 5.217 19 C -0.077 4.077 20 C -0.140 4.140 21 C -0.156 4.156 22 C -0.116 4.116 23 C -0.154 4.154 24 C -0.135 4.135 25 C -0.152 4.152 26 C -0.021 4.021 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.058 0.942 39 H -0.006 1.006 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.042 0.958 44 H 0.124 0.876 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.124 0.876 48 H 0.100 0.900 49 H 0.161 0.839 50 H 0.167 0.833 51 H 0.155 0.845 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 11.957 -10.209 -12.996 20.398 hybrid contribution -0.802 0.747 1.119 1.566 sum 11.154 -9.462 -11.877 18.842 Atomic orbital electron populations 1.22716 0.96458 1.01238 1.00648 1.21122 0.94629 0.96703 0.96744 1.21781 1.01149 0.94783 1.01039 1.22440 1.01129 1.00364 0.96065 1.22391 0.95201 0.92290 0.96292 1.62138 1.15407 1.19754 1.29410 1.20527 0.87161 0.93089 0.95494 1.21607 0.93369 1.19441 1.20293 0.91503 1.25739 0.94908 0.99358 0.99162 1.70097 0.99520 1.44484 1.43242 0.85563 0.78595 0.79027 0.78851 1.18675 1.20682 1.21135 1.22561 0.96995 0.96156 0.92961 1.22362 0.97535 0.95997 0.89671 1.60120 1.19656 1.14540 1.27395 1.23291 0.88718 0.95525 1.00177 1.21699 0.92936 0.97674 1.01739 1.21371 0.96535 0.94911 1.02824 1.20726 0.96142 0.95952 0.98777 1.21366 0.93195 0.99716 1.01166 1.21198 1.00941 0.92125 0.99199 1.20730 0.93744 0.97948 1.02757 1.19744 0.93739 0.90730 0.97894 0.92575 0.94134 0.92132 0.91346 0.92399 0.94371 0.91543 0.92516 0.91421 0.91441 0.91086 0.94224 1.00640 0.93134 0.91756 0.94007 0.95818 0.87577 0.88352 0.88206 0.87567 0.90028 0.83881 0.83323 0.84521 0.87455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.13 6.18 71.98 0.45 -5.68 16 2 C -0.09 -2.98 0.77 -52.18 -0.04 -3.02 16 3 C -0.13 -3.84 8.23 71.98 0.59 -3.25 16 4 C -0.14 -3.84 7.13 71.98 0.51 -3.32 16 5 C 0.07 2.47 4.54 86.30 0.39 2.87 16 6 N -0.54 -23.42 4.90 -900.80 -4.41 -27.83 16 7 C 0.16 8.54 4.23 85.56 0.36 8.90 16 8 C -0.51 -28.08 7.35 25.60 0.19 -27.90 16 9 H 0.07 3.61 5.54 -2.91 -0.02 3.60 16 10 C 0.01 0.34 5.46 84.65 0.46 0.80 16 11 N -0.93 -56.08 13.29 21.44 0.28 -55.80 16 12 Si 0.95 44.43 29.54 68.60 2.03 46.45 16 13 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 14 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 15 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 16 C 0.04 1.52 3.87 86.30 0.33 1.85 16 17 C 0.07 2.06 3.50 86.30 0.30 2.37 16 18 N -0.50 -13.23 5.00 -688.65 -3.44 -16.68 16 19 C 0.05 0.93 7.00 86.65 0.61 1.53 16 20 C -0.10 -1.86 6.97 30.67 0.21 -1.64 16 21 C -0.15 -3.72 6.23 -19.49 -0.12 -3.84 16 22 C -0.10 -2.09 10.03 22.21 0.22 -1.87 16 23 C -0.14 -2.95 10.06 22.30 0.22 -2.73 16 24 C -0.12 -2.97 10.02 22.21 0.22 -2.75 16 25 C -0.13 -3.99 8.55 22.47 0.19 -3.80 16 26 C 0.07 2.15 5.29 38.28 0.20 2.36 16 27 H 0.06 2.70 5.52 -2.38 -0.01 2.69 16 28 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 2.56 3.28 -2.38 -0.01 2.55 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 31 H 0.06 1.55 8.12 -2.38 -0.02 1.53 16 32 H 0.04 1.27 8.12 -2.39 -0.02 1.25 16 33 H 0.07 1.94 4.68 -2.38 -0.01 1.93 16 34 H 0.06 1.36 7.92 -2.39 -0.02 1.34 16 35 H 0.07 1.57 5.72 -2.39 -0.01 1.56 16 36 H 0.07 2.87 4.98 -2.38 -0.01 2.86 16 37 H 0.07 2.29 6.35 -2.39 -0.02 2.27 16 38 H 0.04 2.15 3.26 -11.04 -0.04 2.11 16 39 H -0.02 -1.49 8.14 -2.39 -0.02 -1.51 16 40 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 41 H 0.07 2.40 2.71 -2.38 -0.01 2.39 16 42 H 0.04 1.72 5.55 -2.38 -0.01 1.70 16 43 H 0.02 0.78 8.06 -2.39 -0.02 0.76 16 44 H 0.11 2.80 3.33 -2.39 -0.01 2.80 16 45 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.10 1.54 7.60 -2.39 -0.02 1.52 16 47 H 0.11 1.40 8.14 -2.39 -0.02 1.39 16 48 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.14 2.23 8.06 -2.91 -0.02 2.20 16 50 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 51 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 52 H 0.11 3.50 7.15 -2.91 -0.02 3.48 16 Total: -1.00 -65.33 368.65 0.66 -64.67 By element: Atomic # 1 Polarization: 27.42 SS G_CDS: 0.89 Total: 28.31 kcal Atomic # 6 Polarization: -44.44 SS G_CDS: 5.31 Total: -39.12 kcal Atomic # 7 Polarization: -92.73 SS G_CDS: -7.57 Total: -100.31 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -65.33 0.66 -64.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428229976.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.087 kcal (2) G-P(sol) polarization free energy of solvation -65.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds