Wall clock time and date at job start Tue Mar 31 2020 11:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47160 * 2 1 4 4 C 1.50698 * 109.47114 * 239.99155 * 2 1 3 5 5 C 1.38234 * 120.00656 * 285.72401 * 4 2 1 6 6 C 1.38237 * 120.00283 * 179.74440 * 5 4 2 7 7 C 1.38233 * 119.99899 * 0.55374 * 6 5 4 8 8 C 1.38236 * 119.99848 * 359.69997 * 7 6 5 9 9 C 1.38233 * 119.99860 * 106.00137 * 4 2 1 10 10 N 1.46907 * 109.46974 * 119.99640 * 2 1 3 11 11 C 1.47901 * 111.00039 * 183.91435 * 10 2 1 12 12 C 1.53994 * 107.05787 * 145.84180 * 11 10 2 13 13 C 1.54601 * 105.13888 * 358.77531 * 12 11 10 14 14 H 1.09001 * 110.72311 * 96.58040 * 13 12 11 15 15 N 1.46900 * 110.72249 * 219.68198 * 13 12 11 16 16 C 1.46896 * 111.00193 * 273.54472 * 15 13 12 17 17 C 1.53005 * 109.47213 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47328 * 300.00346 * 17 16 15 19 19 C 1.53001 * 109.46480 * 60.00256 * 17 16 15 20 20 C 1.50698 * 109.46953 * 180.02562 * 17 16 15 21 21 H 1.07994 * 120.00475 * 359.97438 * 20 17 16 22 22 C 1.37881 * 119.99832 * 180.02562 * 20 17 16 23 23 N 1.31519 * 119.99590 * 359.97438 * 22 20 17 24 24 Si 1.86794 * 119.99887 * 179.97438 * 22 20 17 25 25 H 1.48494 * 109.47616 * 59.99568 * 24 22 20 26 26 H 1.48503 * 109.46799 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47299 * 299.99352 * 24 22 20 28 28 C 1.48531 * 110.99789 * 301.31133 * 10 2 1 29 29 H 1.08998 * 109.47254 * 300.00505 * 1 2 3 30 30 H 1.09003 * 109.46837 * 60.00991 * 1 2 3 31 31 H 1.09000 * 109.46909 * 180.02562 * 1 2 3 32 32 H 1.08005 * 119.99460 * 0.02562 * 5 4 2 33 33 H 1.07994 * 119.99609 * 180.27596 * 6 5 4 34 34 H 1.07994 * 119.99982 * 179.72457 * 7 6 5 35 35 H 1.08007 * 119.99877 * 179.97438 * 8 7 6 36 36 H 1.08007 * 120.00028 * 0.02562 * 9 4 2 37 37 H 1.09000 * 109.91086 * 26.48957 * 11 10 2 38 38 H 1.08992 * 110.07670 * 265.28942 * 11 10 2 39 39 H 1.09000 * 110.31041 * 239.86078 * 12 11 10 40 40 H 1.08995 * 110.30519 * 117.69133 * 12 11 10 41 41 H 1.00904 * 110.99662 * 149.58943 * 15 13 12 42 42 H 1.08997 * 109.47343 * 300.00108 * 16 15 13 43 43 H 1.09001 * 109.46889 * 60.00378 * 16 15 13 44 44 H 1.09010 * 109.46611 * 59.99897 * 18 17 16 45 45 H 1.08994 * 109.46951 * 179.97438 * 18 17 16 46 46 H 1.08993 * 109.47101 * 300.00418 * 18 17 16 47 47 H 1.08997 * 109.47346 * 60.00207 * 19 17 16 48 48 H 1.09007 * 109.46779 * 180.02562 * 19 17 16 49 49 H 1.08999 * 109.47433 * 299.99774 * 19 17 16 50 50 H 0.97000 * 119.99173 * 180.02562 * 23 22 20 51 51 H 1.08999 * 110.67019 * 81.84001 * 28 10 2 52 52 H 1.09001 * 110.67111 * 318.71636 * 28 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 6 1.9569 -2.0884 -1.3121 6 6 2.4129 -2.7398 -2.4429 7 6 2.9548 -2.0141 -3.4873 8 6 3.0350 -0.6367 -3.4034 9 6 2.5739 0.0151 -2.2749 10 7 2.0197 -0.6925 1.1995 11 6 3.4951 -0.6311 1.2818 12 6 3.8610 -0.5420 2.7750 13 6 2.5075 -0.5251 3.5220 14 1 2.2445 -1.5253 3.8663 15 7 2.5474 0.4167 4.6487 16 6 3.0830 -0.2281 5.8551 17 6 3.1096 0.7819 7.0041 18 6 3.9989 1.9666 6.6214 19 6 1.6888 1.2787 7.2793 20 6 3.6596 0.1206 8.2415 21 1 3.9597 -0.9164 8.2116 22 6 3.7786 0.8392 9.4122 23 7 3.4126 2.1019 9.4487 24 14 4.4597 0.0193 10.9462 25 1 5.8387 -0.4626 10.6793 26 1 4.4856 0.9996 12.0613 27 1 3.5967 -1.1307 11.3175 28 6 1.5176 -0.0374 2.4345 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.5376 -2.6557 -0.4943 33 1 2.3498 -3.8159 -2.5085 34 1 3.3151 -2.5233 -4.3689 35 1 3.4588 -0.0697 -4.2192 36 1 2.6373 1.0913 -2.2090 37 1 3.8598 0.2518 0.7568 38 1 3.9319 -1.5293 0.8454 39 1 4.4148 0.3753 2.9748 40 1 4.4469 -1.4113 3.0734 41 1 1.6348 0.8100 4.8237 42 1 2.4496 -1.0723 6.1275 43 1 4.0953 -0.5816 5.6591 44 1 3.6014 2.4450 5.7262 45 1 4.0175 2.6862 7.4398 46 1 5.0110 1.6127 6.4252 47 1 1.0552 0.4347 7.5519 48 1 1.7078 1.9986 8.0976 49 1 1.2914 1.7571 6.3841 50 1 3.4968 2.6075 10.2722 51 1 0.5040 -0.3682 2.6606 52 1 1.5566 1.0476 2.3375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459684032.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:29 Heat of formation + Delta-G solvation = 26.102651 kcal Electronic energy + Delta-G solvation = -26726.950820 eV Core-core repulsion = 23304.714752 eV Total energy + Delta-G solvation = -3422.236068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.07782 -38.61967 -36.66254 -34.61945 -32.68557 -31.07057 -30.73608 -30.18309 -28.18690 -27.61796 -25.55309 -25.19772 -24.02691 -23.27111 -22.74041 -21.69834 -20.22701 -19.87404 -18.35956 -17.06466 -16.36256 -16.10601 -15.63486 -15.46713 -14.95288 -14.65210 -14.19257 -14.11905 -13.96015 -13.53001 -13.48802 -13.22994 -12.93040 -12.82137 -12.46433 -12.41035 -12.15772 -11.97600 -11.76485 -11.49174 -11.32627 -11.17301 -11.08004 -10.98222 -10.90738 -10.79910 -10.70243 -10.60821 -10.32502 -10.14406 -10.03872 -9.37406 -9.07956 -9.05303 -8.88192 -8.62026 -8.48996 -8.27856 -7.72571 -5.90107 -4.00344 1.16460 1.25095 3.33454 3.38157 3.40932 3.57259 3.86190 4.43824 4.45507 4.68701 4.74565 4.82179 4.82495 4.96083 5.02472 5.09977 5.16425 5.29368 5.33998 5.35278 5.41700 5.42624 5.52935 5.62896 5.72679 5.76951 5.83162 5.90246 5.97267 6.01719 6.07051 6.25440 6.27887 6.30944 6.35277 6.36454 6.44647 6.51111 6.73373 6.80734 6.85721 6.91745 7.01125 7.08912 7.18146 7.38692 7.48671 7.75525 7.77222 7.84682 7.98240 8.22379 8.35632 8.57155 9.00904 9.64471 11.10376 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031910 B = 0.002293 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.270749 B =12205.675821 C =12458.131280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.112 3.888 3 H 0.050 0.950 4 C -0.074 4.074 5 C -0.090 4.090 6 C -0.126 4.126 7 C -0.124 4.124 8 C -0.124 4.124 9 C -0.117 4.117 10 N -0.508 5.508 11 C 0.043 3.957 12 C -0.121 4.121 13 C 0.083 3.917 14 H 0.051 0.949 15 N -0.679 5.679 16 C 0.077 3.923 17 C 0.069 3.931 18 C -0.118 4.118 19 C -0.132 4.132 20 C -0.506 4.506 21 H 0.051 0.949 22 C 0.065 3.935 23 N -0.885 5.885 24 Si 0.889 3.111 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.279 1.279 28 C 0.037 3.963 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.337 0.663 42 H 0.013 0.987 43 H 0.056 0.944 44 H 0.019 0.981 45 H 0.073 0.927 46 H 0.017 0.983 47 H 0.019 0.981 48 H 0.083 0.917 49 H 0.010 0.990 50 H 0.258 0.742 51 H 0.079 0.921 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.133 -4.888 -23.752 24.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.003 3.997 3 H 0.068 0.932 4 C -0.074 4.074 5 C -0.108 4.108 6 C -0.144 4.144 7 C -0.143 4.143 8 C -0.142 4.142 9 C -0.136 4.136 10 N -0.233 5.233 11 C -0.085 4.085 12 C -0.160 4.160 13 C -0.028 4.028 14 H 0.069 0.931 15 N -0.311 5.311 16 C -0.051 4.051 17 C 0.068 3.932 18 C -0.176 4.176 19 C -0.190 4.190 20 C -0.545 4.545 21 H 0.069 0.931 22 C -0.136 4.136 23 N -0.524 5.524 24 Si 0.717 3.283 25 H -0.204 1.204 26 H -0.214 1.214 27 H -0.205 1.205 28 C -0.091 4.091 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.147 0.853 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.157 0.843 42 H 0.031 0.969 43 H 0.074 0.926 44 H 0.038 0.962 45 H 0.092 0.908 46 H 0.036 0.964 47 H 0.038 0.962 48 H 0.102 0.898 49 H 0.029 0.971 50 H 0.068 0.932 51 H 0.097 0.903 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.727 -4.993 -23.834 24.635 hybrid contribution 0.025 -0.232 1.105 1.130 sum -3.701 -5.225 -22.729 23.613 Atomic orbital electron populations 1.21851 0.93318 1.02818 1.01892 1.20733 0.95820 0.94832 0.88303 0.93216 1.19768 0.98594 0.94138 0.94911 1.21061 0.98380 0.93946 0.97413 1.21195 0.99324 0.99855 0.93982 1.21134 1.00010 0.94270 0.98841 1.21071 1.00463 0.94670 0.97967 1.21051 0.99015 0.99687 0.93809 1.64757 1.07235 1.50363 1.00912 1.22782 0.87950 1.00698 0.97041 1.22447 0.97838 1.02792 0.92879 1.22358 0.94115 0.95030 0.91280 0.93140 1.60689 1.30277 1.34069 1.06091 1.22166 0.97692 0.96123 0.89109 1.18091 0.92808 0.91770 0.90516 1.21633 0.97091 0.99853 0.99025 1.21833 0.97115 1.00245 0.99797 1.21071 1.41873 0.96953 0.94597 0.93092 1.24888 0.95391 0.94841 0.98493 1.69828 1.47957 1.07708 1.26897 0.86720 0.79572 0.79133 0.82880 1.20418 1.21382 1.20477 1.23321 0.98789 0.97592 0.89402 0.91996 0.92230 0.91628 0.85297 0.86260 0.86437 0.86322 0.86420 0.94021 0.90861 0.90172 0.91704 0.84297 0.96866 0.92597 0.96197 0.90786 0.96363 0.96218 0.89848 0.97087 0.93162 0.90306 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.95 37.16 0.33 -0.96 16 2 C 0.11 1.15 1.97 -68.86 -0.14 1.01 16 3 H 0.05 0.53 7.78 -51.93 -0.40 0.13 16 4 C -0.07 -0.74 4.15 -104.63 -0.43 -1.18 16 5 C -0.09 -0.90 9.21 -39.58 -0.36 -1.26 16 6 C -0.13 -1.12 10.05 -39.58 -0.40 -1.52 16 7 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 8 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 9 C -0.12 -1.10 9.67 -39.58 -0.38 -1.48 16 10 N -0.51 -5.89 4.58 -223.89 -1.03 -6.92 16 11 C 0.04 0.53 5.95 -2.75 -0.02 0.51 16 12 C -0.12 -1.68 6.61 -25.37 -0.17 -1.85 16 13 C 0.08 1.22 3.35 -65.85 -0.22 1.00 16 14 H 0.05 0.79 7.89 -51.93 -0.41 0.38 16 15 N -0.68 -11.82 5.52 -104.76 -0.58 -12.40 16 16 C 0.08 1.61 4.44 -3.82 -0.02 1.59 16 17 C 0.07 1.65 0.57 -155.66 -0.09 1.56 16 18 C -0.12 -2.88 8.09 37.16 0.30 -2.58 16 19 C -0.13 -3.10 7.92 37.16 0.29 -2.80 16 20 C -0.51 -13.63 8.01 -34.44 -0.28 -13.90 16 21 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 22 C 0.06 1.76 5.15 -17.82 -0.09 1.66 16 23 N -0.89 -24.51 9.35 55.43 0.52 -23.99 16 24 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 C 0.04 0.46 4.79 -1.90 -0.01 0.45 16 29 H 0.06 0.56 6.91 -51.93 -0.36 0.20 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 32 H 0.13 1.31 7.90 -52.48 -0.41 0.90 16 33 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 34 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 36 H 0.12 0.96 8.00 -52.48 -0.42 0.54 16 37 H 0.04 0.51 7.67 -51.93 -0.40 0.11 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.23 8.05 -51.93 -0.42 0.81 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.34 5.80 6.54 -39.29 -0.26 5.54 16 42 H 0.01 0.28 8.08 -51.93 -0.42 -0.14 16 43 H 0.06 1.20 8.13 -51.93 -0.42 0.78 16 44 H 0.02 0.44 7.60 -51.92 -0.39 0.04 16 45 H 0.07 1.98 6.07 -51.93 -0.32 1.66 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.08 2.18 6.07 -51.93 -0.32 1.86 16 49 H 0.01 0.22 6.57 -51.93 -0.34 -0.12 16 50 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 51 H 0.08 0.93 7.66 -51.93 -0.40 0.53 16 52 H 0.05 0.71 8.01 -51.93 -0.42 0.29 16 LS Contribution 397.22 15.07 5.99 5.99 Total: -1.00 -27.25 397.22 -12.03 -39.29 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -9.45 Total: 4.51 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -2.47 Total: -22.63 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: -1.08 Total: -43.30 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -27.25 -12.03 -39.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459684032.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.390 kcal (2) G-P(sol) polarization free energy of solvation -27.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds