Wall clock time and date at job start Tue Mar 31 2020 11:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47160 * 2 1 4 4 C 1.50698 * 109.47114 * 239.99155 * 2 1 3 5 5 C 1.38234 * 120.00656 * 285.72401 * 4 2 1 6 6 C 1.38237 * 120.00283 * 179.74440 * 5 4 2 7 7 C 1.38233 * 119.99899 * 0.55374 * 6 5 4 8 8 C 1.38236 * 119.99848 * 359.69997 * 7 6 5 9 9 C 1.38233 * 119.99860 * 106.00137 * 4 2 1 10 10 N 1.46907 * 109.46974 * 119.99640 * 2 1 3 11 11 C 1.47901 * 111.00039 * 183.91435 * 10 2 1 12 12 C 1.53994 * 107.05787 * 145.84180 * 11 10 2 13 13 C 1.54601 * 105.13888 * 358.77531 * 12 11 10 14 14 H 1.09001 * 110.72311 * 96.58040 * 13 12 11 15 15 N 1.46900 * 110.72249 * 219.68198 * 13 12 11 16 16 C 1.46896 * 111.00193 * 273.54472 * 15 13 12 17 17 C 1.53005 * 109.47213 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47328 * 300.00346 * 17 16 15 19 19 C 1.53001 * 109.46480 * 60.00256 * 17 16 15 20 20 C 1.50698 * 109.46953 * 180.02562 * 17 16 15 21 21 H 1.07994 * 120.00475 * 359.97438 * 20 17 16 22 22 C 1.37881 * 119.99832 * 180.02562 * 20 17 16 23 23 N 1.31519 * 119.99590 * 359.97438 * 22 20 17 24 24 Si 1.86794 * 119.99887 * 179.97438 * 22 20 17 25 25 H 1.48494 * 109.47616 * 59.99568 * 24 22 20 26 26 H 1.48503 * 109.46799 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47299 * 299.99352 * 24 22 20 28 28 C 1.48531 * 110.99789 * 301.31133 * 10 2 1 29 29 H 1.08998 * 109.47254 * 300.00505 * 1 2 3 30 30 H 1.09003 * 109.46837 * 60.00991 * 1 2 3 31 31 H 1.09000 * 109.46909 * 180.02562 * 1 2 3 32 32 H 1.08005 * 119.99460 * 0.02562 * 5 4 2 33 33 H 1.07994 * 119.99609 * 180.27596 * 6 5 4 34 34 H 1.07994 * 119.99982 * 179.72457 * 7 6 5 35 35 H 1.08007 * 119.99877 * 179.97438 * 8 7 6 36 36 H 1.08007 * 120.00028 * 0.02562 * 9 4 2 37 37 H 1.09000 * 109.91086 * 26.48957 * 11 10 2 38 38 H 1.08992 * 110.07670 * 265.28942 * 11 10 2 39 39 H 1.09000 * 110.31041 * 239.86078 * 12 11 10 40 40 H 1.08995 * 110.30519 * 117.69133 * 12 11 10 41 41 H 1.00904 * 110.99662 * 149.58943 * 15 13 12 42 42 H 1.08997 * 109.47343 * 300.00108 * 16 15 13 43 43 H 1.09001 * 109.46889 * 60.00378 * 16 15 13 44 44 H 1.09010 * 109.46611 * 59.99897 * 18 17 16 45 45 H 1.08994 * 109.46951 * 179.97438 * 18 17 16 46 46 H 1.08993 * 109.47101 * 300.00418 * 18 17 16 47 47 H 1.08997 * 109.47346 * 60.00207 * 19 17 16 48 48 H 1.09007 * 109.46779 * 180.02562 * 19 17 16 49 49 H 1.08999 * 109.47433 * 299.99774 * 19 17 16 50 50 H 0.97000 * 119.99173 * 180.02562 * 23 22 20 51 51 H 1.08999 * 110.67019 * 81.84001 * 28 10 2 52 52 H 1.09001 * 110.67111 * 318.71636 * 28 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 6 1.9569 -2.0884 -1.3121 6 6 2.4129 -2.7398 -2.4429 7 6 2.9548 -2.0141 -3.4873 8 6 3.0350 -0.6367 -3.4034 9 6 2.5739 0.0151 -2.2749 10 7 2.0197 -0.6925 1.1995 11 6 3.4951 -0.6311 1.2818 12 6 3.8610 -0.5420 2.7750 13 6 2.5075 -0.5251 3.5220 14 1 2.2445 -1.5253 3.8663 15 7 2.5474 0.4167 4.6487 16 6 3.0830 -0.2281 5.8551 17 6 3.1096 0.7819 7.0041 18 6 3.9989 1.9666 6.6214 19 6 1.6888 1.2787 7.2793 20 6 3.6596 0.1206 8.2415 21 1 3.9597 -0.9164 8.2116 22 6 3.7786 0.8392 9.4122 23 7 3.4126 2.1019 9.4487 24 14 4.4597 0.0193 10.9462 25 1 5.8387 -0.4626 10.6793 26 1 4.4856 0.9996 12.0613 27 1 3.5967 -1.1307 11.3175 28 6 1.5176 -0.0374 2.4345 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.5376 -2.6557 -0.4943 33 1 2.3498 -3.8159 -2.5085 34 1 3.3151 -2.5233 -4.3689 35 1 3.4588 -0.0697 -4.2192 36 1 2.6373 1.0913 -2.2090 37 1 3.8598 0.2518 0.7568 38 1 3.9319 -1.5293 0.8454 39 1 4.4148 0.3753 2.9748 40 1 4.4469 -1.4113 3.0734 41 1 1.6348 0.8100 4.8237 42 1 2.4496 -1.0723 6.1275 43 1 4.0953 -0.5816 5.6591 44 1 3.6014 2.4450 5.7262 45 1 4.0175 2.6862 7.4398 46 1 5.0110 1.6127 6.4252 47 1 1.0552 0.4347 7.5519 48 1 1.7078 1.9986 8.0976 49 1 1.2914 1.7571 6.3841 50 1 3.4968 2.6075 10.2722 51 1 0.5040 -0.3682 2.6606 52 1 1.5566 1.0476 2.3375 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459684032.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:28 Heat of formation + Delta-G solvation = 13.037646 kcal Electronic energy + Delta-G solvation = -26727.517361 eV Core-core repulsion = 23304.714752 eV Total energy + Delta-G solvation = -3422.802609 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.92389 -39.57641 -38.25715 -35.88511 -34.11221 -32.44012 -31.71719 -31.02372 -29.07831 -28.86223 -27.48896 -27.23565 -25.41133 -24.33946 -23.44857 -22.59603 -21.27140 -20.89239 -20.18307 -18.01495 -17.69092 -17.24424 -17.06851 -16.64649 -16.23139 -15.78226 -15.45815 -15.13061 -15.06687 -14.81601 -14.52561 -14.20578 -14.15036 -13.91133 -13.87089 -13.63374 -13.31069 -13.15286 -12.99600 -12.92654 -12.62659 -12.58345 -12.51027 -12.35250 -12.22891 -12.15419 -12.07680 -11.93413 -11.81974 -11.58666 -11.49917 -11.28608 -10.89245 -10.59303 -10.33422 -9.75162 -9.57785 -9.42606 -9.19932 -7.96141 -6.12765 0.48615 0.57591 1.43419 1.44180 1.50957 2.46523 2.78008 3.01487 3.25784 3.52267 3.63117 3.67513 3.98590 4.05232 4.16454 4.22830 4.33417 4.34959 4.35424 4.39969 4.50539 4.61403 4.66118 4.68011 4.69516 4.75389 4.85056 4.87774 4.94397 4.95950 4.98863 5.04453 5.13564 5.17874 5.18317 5.22943 5.24079 5.30169 5.31100 5.43773 5.54600 5.60801 5.68761 5.70677 5.71243 5.78132 5.86943 6.10813 6.18807 6.20524 6.29242 6.35826 6.50698 6.65775 6.96496 7.54508 9.01730 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.031910 B = 0.002293 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.270749 B =12205.675821 C =12458.131280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.113 3.887 3 H 0.047 0.953 4 C -0.084 4.084 5 C -0.103 4.103 6 C -0.133 4.133 7 C -0.129 4.129 8 C -0.128 4.128 9 C -0.128 4.128 10 N -0.508 5.508 11 C 0.053 3.947 12 C -0.118 4.118 13 C 0.082 3.918 14 H 0.044 0.956 15 N -0.677 5.677 16 C 0.095 3.905 17 C 0.060 3.940 18 C -0.104 4.104 19 C -0.121 4.121 20 C -0.526 4.526 21 H 0.043 0.957 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.943 3.057 25 H -0.277 1.277 26 H -0.285 1.285 27 H -0.276 1.276 28 C 0.047 3.953 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.122 0.878 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.126 0.874 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.341 0.659 42 H 0.007 0.993 43 H 0.045 0.955 44 H 0.034 0.966 45 H 0.048 0.952 46 H 0.008 0.992 47 H 0.017 0.983 48 H 0.055 0.945 49 H 0.035 0.965 50 H 0.257 0.743 51 H 0.089 0.911 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.420 -5.388 -25.479 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.005 3.995 3 H 0.065 0.935 4 C -0.085 4.085 5 C -0.121 4.121 6 C -0.150 4.150 7 C -0.147 4.147 8 C -0.146 4.146 9 C -0.146 4.146 10 N -0.232 5.232 11 C -0.075 4.075 12 C -0.157 4.157 13 C -0.029 4.029 14 H 0.062 0.938 15 N -0.310 5.310 16 C -0.035 4.035 17 C 0.059 3.941 18 C -0.162 4.162 19 C -0.179 4.179 20 C -0.565 4.565 21 H 0.061 0.939 22 C -0.177 4.177 23 N -0.542 5.542 24 Si 0.770 3.230 25 H -0.202 1.202 26 H -0.211 1.211 27 H -0.201 1.201 28 C -0.081 4.081 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.140 0.860 33 H 0.152 0.848 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.144 0.856 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.160 0.840 42 H 0.026 0.974 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.067 0.933 46 H 0.027 0.973 47 H 0.036 0.964 48 H 0.074 0.926 49 H 0.054 0.946 50 H 0.067 0.933 51 H 0.107 0.893 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.019 -5.496 -25.575 26.466 hybrid contribution 0.127 -0.085 1.570 1.578 sum -3.892 -5.581 -24.005 24.950 Atomic orbital electron populations 1.21821 0.92450 1.02772 1.02415 1.20757 0.96493 0.94497 0.87763 0.93471 1.19787 0.99344 0.94279 0.95076 1.21093 0.99132 0.94034 0.97829 1.21433 0.99026 1.00802 0.93787 1.21444 0.99423 0.94430 0.99364 1.21370 0.99965 0.95050 0.98218 1.21242 0.99097 1.00285 0.93998 1.64778 1.06740 1.50563 1.01148 1.22663 0.88436 1.00867 0.95534 1.22393 0.97244 1.01949 0.94121 1.22388 0.95440 0.94145 0.90902 0.93800 1.60600 1.30452 1.34514 1.05390 1.21795 0.97291 0.94997 0.89371 1.18146 0.92838 0.92232 0.90892 1.21460 0.96794 0.99401 0.98553 1.21662 0.96864 0.99492 0.99862 1.21398 1.42197 0.96832 0.96081 0.93873 1.25532 0.95804 0.95408 1.00978 1.69959 1.48411 1.08503 1.27298 0.85848 0.78920 0.78325 0.79880 1.20230 1.21076 1.20101 1.23214 0.98554 0.97456 0.88889 0.91903 0.91276 0.91922 0.85973 0.84810 0.84347 0.84385 0.85566 0.93907 0.90607 0.91577 0.91921 0.83950 0.97438 0.93622 0.94691 0.93335 0.97266 0.96429 0.92590 0.94588 0.93328 0.89309 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.95 71.98 0.64 -1.64 16 2 C 0.11 2.16 1.97 44.17 0.09 2.25 16 3 H 0.05 0.94 7.78 -2.39 -0.02 0.92 16 4 C -0.08 -1.59 4.15 -19.87 -0.08 -1.67 16 5 C -0.10 -1.93 9.21 22.27 0.21 -1.73 16 6 C -0.13 -2.15 10.05 22.27 0.22 -1.92 16 7 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 8 C -0.13 -1.92 10.05 22.27 0.22 -1.69 16 9 C -0.13 -2.18 9.67 22.27 0.22 -1.96 16 10 N -0.51 -11.11 4.58 -862.24 -3.95 -15.05 16 11 C 0.05 1.23 5.95 86.45 0.51 1.75 16 12 C -0.12 -3.22 6.61 31.48 0.21 -3.01 16 13 C 0.08 2.33 3.35 46.12 0.15 2.49 16 14 H 0.04 1.34 7.89 -2.39 -0.02 1.32 16 15 N -0.68 -22.95 5.52 -485.36 -2.68 -25.63 16 16 C 0.09 3.90 4.44 86.31 0.38 4.28 16 17 C 0.06 2.86 0.57 -52.93 -0.03 2.83 16 18 C -0.10 -5.08 8.09 71.98 0.58 -4.50 16 19 C -0.12 -5.63 7.92 71.98 0.57 -5.06 16 20 C -0.53 -28.53 8.01 25.60 0.21 -28.32 16 21 H 0.04 2.34 7.74 -2.91 -0.02 2.32 16 22 C 0.02 1.19 5.15 84.65 0.44 1.62 16 23 N -0.90 -50.44 9.35 21.45 0.20 -50.24 16 24 Si 0.94 43.54 29.54 68.60 2.03 45.56 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 27 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 28 C 0.05 1.10 4.79 86.65 0.41 1.51 16 29 H 0.06 1.02 6.91 -2.39 -0.02 1.01 16 30 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.08 8.08 -2.39 -0.02 1.06 16 32 H 0.12 2.40 7.90 -2.91 -0.02 2.38 16 33 H 0.13 1.68 8.06 -2.91 -0.02 1.65 16 34 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 35 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 36 H 0.13 1.85 8.00 -2.91 -0.02 1.82 16 37 H 0.04 0.99 7.67 -2.39 -0.02 0.97 16 38 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 1.99 8.05 -2.39 -0.02 1.98 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.34 11.18 6.54 -89.69 -0.59 10.59 16 42 H 0.01 0.31 8.08 -2.39 -0.02 0.29 16 43 H 0.05 1.96 8.13 -2.39 -0.02 1.94 16 44 H 0.03 1.54 7.60 -2.38 -0.02 1.53 16 45 H 0.05 2.61 6.07 -2.39 -0.01 2.59 16 46 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.06 2.93 6.07 -2.38 -0.01 2.91 16 49 H 0.04 1.45 6.57 -2.39 -0.02 1.43 16 50 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 51 H 0.09 1.92 7.66 -2.39 -0.02 1.90 16 52 H 0.05 1.29 8.01 -2.39 -0.02 1.27 16 Total: -1.00 -57.43 397.22 1.06 -56.37 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: 0.28 Total: 25.43 kcal Atomic # 6 Polarization: -41.61 SS G_CDS: 5.18 Total: -36.43 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -6.42 Total: -90.93 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -57.43 1.06 -56.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459684032.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.406 kcal (2) G-P(sol) polarization free energy of solvation -57.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds