Wall clock time and date at job start Tue Mar 31 2020 11:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46957 * 2 1 4 4 C 1.50697 * 109.47513 * 120.00071 * 2 1 3 5 5 C 1.38231 * 119.99874 * 73.04087 * 4 2 1 6 6 C 1.38238 * 120.00357 * 180.28587 * 5 4 2 7 7 C 1.38236 * 119.99348 * 359.46445 * 6 5 4 8 8 C 1.38234 * 120.00312 * 0.25430 * 7 6 5 9 9 C 1.38235 * 120.00061 * 252.77086 * 4 2 1 10 10 N 1.46896 * 109.47337 * 240.00442 * 2 1 3 11 11 C 1.48538 * 111.00073 * 58.94512 * 10 2 1 12 12 C 1.54936 * 103.22744 * 159.72062 * 11 10 2 13 13 C 1.54598 * 102.92287 * 322.58955 * 12 11 10 14 14 H 1.09002 * 110.30570 * 263.03597 * 13 12 11 15 15 N 1.46898 * 110.30946 * 140.87275 * 13 12 11 16 16 C 1.46904 * 111.00106 * 89.28210 * 15 13 12 17 17 C 1.52998 * 109.47060 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47803 * 300.00261 * 17 16 15 19 19 C 1.53006 * 109.46711 * 60.00608 * 17 16 15 20 20 C 1.50697 * 109.47018 * 179.97438 * 17 16 15 21 21 H 1.08005 * 120.00025 * 0.02562 * 20 17 16 22 22 C 1.37880 * 120.00373 * 180.02562 * 20 17 16 23 23 N 1.31517 * 119.99721 * 0.02562 * 22 20 17 24 24 Si 1.86797 * 120.00365 * 180.02562 * 22 20 17 25 25 H 1.48492 * 109.47022 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47199 * 120.00282 * 24 22 20 27 27 H 1.48500 * 109.46918 * 239.99867 * 24 22 20 28 28 C 1.47904 * 111.00286 * 176.33944 * 10 2 1 29 29 H 1.09003 * 109.47368 * 57.82833 * 1 2 3 30 30 H 1.09000 * 109.47002 * 177.82406 * 1 2 3 31 31 H 1.08994 * 109.47577 * 297.82445 * 1 2 3 32 32 H 1.08003 * 120.00225 * 0.02562 * 5 4 2 33 33 H 1.08000 * 120.00439 * 179.74295 * 6 5 4 34 34 H 1.08003 * 120.00059 * 180.28237 * 7 6 5 35 35 H 1.07997 * 120.00233 * 180.02562 * 8 7 6 36 36 H 1.07996 * 120.00187 * 359.97438 * 9 4 2 37 37 H 1.08996 * 110.66603 * 278.15554 * 11 10 2 38 38 H 1.08996 * 110.66803 * 41.28757 * 11 10 2 39 39 H 1.08998 * 110.72675 * 204.22963 * 12 11 10 40 40 H 1.09001 * 110.72473 * 80.94630 * 12 11 10 41 41 H 1.00897 * 111.00185 * 325.33086 * 15 13 12 42 42 H 1.08994 * 109.46944 * 300.00048 * 16 15 13 43 43 H 1.08998 * 109.46993 * 59.99969 * 16 15 13 44 44 H 1.09000 * 109.46432 * 59.99667 * 18 17 16 45 45 H 1.08992 * 109.47128 * 180.02562 * 18 17 16 46 46 H 1.09006 * 109.46843 * 300.00264 * 18 17 16 47 47 H 1.08994 * 109.47168 * 59.99808 * 19 17 16 48 48 H 1.09003 * 109.47028 * 179.97438 * 19 17 16 49 49 H 1.09004 * 109.46819 * 299.99658 * 19 17 16 50 50 H 0.96996 * 120.00341 * 179.97438 * 23 22 20 51 51 H 1.08998 * 109.91772 * 333.51306 * 28 10 2 52 52 H 1.09005 * 109.91183 * 94.80043 * 28 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.9336 -2.0861 1.3230 6 6 2.3890 -2.7373 2.4541 7 6 2.9534 -2.0137 3.4879 8 6 3.0575 -0.6385 3.3929 9 6 2.5971 0.0131 2.2641 10 7 2.0197 -0.6924 -1.1994 11 6 1.5227 -0.0336 -2.4345 12 6 2.5132 -0.5234 -3.5206 13 6 3.8649 -0.5464 -2.7707 14 1 4.4226 0.3692 -2.9680 15 7 4.6512 -1.7202 -3.1730 16 6 5.4932 -1.4159 -4.3377 17 6 6.2956 -2.6594 -4.7257 18 6 7.1819 -3.0814 -3.5521 19 6 5.3349 -3.7980 -5.0744 20 6 7.1588 -2.3475 -5.9209 21 1 7.1375 -1.3608 -6.3596 22 6 7.9758 -3.3216 -6.4544 23 7 8.0014 -4.5233 -5.9205 24 14 9.0463 -2.9347 -7.9355 25 1 8.8349 -1.5228 -8.3438 26 1 10.4739 -3.1398 -7.5816 27 1 8.6808 -3.8344 -9.0590 28 6 3.4955 -0.6362 -1.2785 29 1 -0.3634 0.5472 -0.8699 30 1 -0.3633 -1.0269 -0.0390 31 1 -0.3634 0.4796 0.9088 32 1 1.4967 -2.6518 0.5133 33 1 2.3081 -3.8117 2.5282 34 1 3.3134 -2.5228 4.3698 35 1 3.4988 -0.0733 4.2005 36 1 2.6787 1.0874 2.1897 37 1 0.5084 -0.3605 -2.6634 38 1 1.5654 1.0510 -2.3359 39 1 2.5472 0.1765 -4.3555 40 1 2.2457 -1.5226 -3.8643 41 1 4.0522 -2.5111 -3.3566 42 1 4.8618 -1.1150 -5.1737 43 1 6.1778 -0.6050 -4.0892 44 1 6.5571 -3.3071 -2.6879 45 1 7.7538 -3.9670 -3.8288 46 1 7.8663 -2.2702 -3.3037 47 1 4.7036 -3.4974 -5.9106 48 1 5.9065 -4.6839 -5.3513 49 1 4.7101 -4.0238 -4.2102 50 1 8.5758 -5.2088 -6.2960 51 1 3.8624 0.2445 -0.7514 52 1 3.9252 -1.5385 -0.8433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459684037.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:31 Heat of formation + Delta-G solvation = 27.031760 kcal Electronic energy + Delta-G solvation = -27039.581907 eV Core-core repulsion = 23617.386129 eV Total energy + Delta-G solvation = -3422.195778 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.03215 -38.60508 -36.63816 -34.64954 -32.58014 -30.96054 -30.76151 -29.51039 -29.18139 -26.98078 -25.52530 -25.17407 -23.88652 -23.46131 -22.67278 -21.50954 -20.43644 -19.89998 -18.46077 -16.96425 -16.38479 -15.84243 -15.70091 -15.28595 -15.02966 -14.56121 -14.23964 -14.05500 -13.90660 -13.40653 -13.20121 -13.15231 -12.90396 -12.66482 -12.48676 -12.39570 -12.06343 -12.00981 -11.67347 -11.60126 -11.36724 -11.23647 -11.06349 -11.01812 -10.93043 -10.77727 -10.63374 -10.57064 -10.48220 -10.14217 -10.02738 -9.35486 -9.02604 -8.95752 -8.78019 -8.58358 -8.42925 -8.26778 -7.61997 -5.88852 -3.99133 1.27885 1.37309 3.31400 3.39779 3.43153 3.68337 3.95061 4.44194 4.48410 4.74388 4.75387 4.83313 4.93564 4.98605 5.06962 5.12355 5.14602 5.28152 5.36560 5.41328 5.44165 5.49846 5.56480 5.60545 5.69952 5.74014 5.89473 5.93185 5.97449 6.00793 6.06024 6.19316 6.27922 6.37559 6.39315 6.47838 6.49661 6.54424 6.76143 6.89051 6.93645 6.96616 7.07302 7.12148 7.20919 7.42840 7.52278 7.79143 7.79623 7.87891 8.04627 8.25293 8.38494 8.59095 9.02691 9.65780 11.11613 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.002783 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.788113 B =10060.049597 C =10882.218346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.113 3.887 3 H 0.046 0.954 4 C -0.076 4.076 5 C -0.086 4.086 6 C -0.123 4.123 7 C -0.123 4.123 8 C -0.124 4.124 9 C -0.118 4.118 10 N -0.508 5.508 11 C 0.039 3.961 12 C -0.152 4.152 13 C 0.079 3.921 14 H 0.075 0.925 15 N -0.675 5.675 16 C 0.076 3.924 17 C 0.069 3.931 18 C -0.118 4.118 19 C -0.132 4.132 20 C -0.506 4.506 21 H 0.051 0.949 22 C 0.065 3.935 23 N -0.884 5.884 24 Si 0.887 3.113 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.286 1.286 28 C 0.049 3.951 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.129 0.871 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.116 0.884 37 H 0.079 0.921 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.341 0.659 42 H 0.012 0.988 43 H 0.053 0.947 44 H 0.020 0.980 45 H 0.073 0.927 46 H 0.017 0.983 47 H 0.018 0.982 48 H 0.083 0.917 49 H 0.011 0.989 50 H 0.257 0.743 51 H 0.039 0.961 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.085 8.156 15.335 23.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.004 3.996 3 H 0.064 0.936 4 C -0.076 4.076 5 C -0.105 4.105 6 C -0.141 4.141 7 C -0.141 4.141 8 C -0.142 4.142 9 C -0.136 4.136 10 N -0.233 5.233 11 C -0.089 4.089 12 C -0.192 4.192 13 C -0.033 4.033 14 H 0.093 0.907 15 N -0.307 5.307 16 C -0.052 4.052 17 C 0.068 3.932 18 C -0.176 4.176 19 C -0.189 4.189 20 C -0.544 4.544 21 H 0.070 0.930 22 C -0.136 4.136 23 N -0.523 5.523 24 Si 0.716 3.284 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.212 1.212 28 C -0.079 4.079 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.147 0.853 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.162 0.838 42 H 0.030 0.970 43 H 0.072 0.928 44 H 0.039 0.961 45 H 0.092 0.908 46 H 0.036 0.964 47 H 0.037 0.963 48 H 0.101 0.899 49 H 0.030 0.970 50 H 0.067 0.933 51 H 0.057 0.943 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.660 7.561 15.794 22.837 hybrid contribution 0.327 1.175 -1.583 1.998 sum -14.333 8.736 14.211 21.994 Atomic orbital electron populations 1.21837 0.93515 1.02855 1.01554 1.20707 0.95614 0.94644 0.88625 0.93577 1.19716 0.98848 0.94199 0.94847 1.21043 0.98321 0.93863 0.97245 1.21208 0.99027 0.99928 0.93980 1.21139 0.99732 0.94267 0.98956 1.21050 1.00496 0.94719 0.97957 1.21006 0.99136 0.99512 0.93973 1.64858 1.07829 1.49970 1.00625 1.23144 0.99270 0.96390 0.90099 1.23268 0.96212 1.02117 0.97575 1.22385 0.92137 0.95304 0.93478 0.90652 1.60645 1.25323 1.05130 1.39606 1.22157 0.94371 1.00330 0.88361 1.18087 0.91861 0.89474 0.93747 1.21630 0.98750 1.01235 0.96006 1.21827 0.97843 1.02843 0.96420 1.21158 1.23191 0.97247 1.12845 0.93037 1.24887 0.96758 0.95115 0.96843 1.69847 1.39177 1.02774 1.40517 0.86618 0.80481 0.78273 0.83063 1.19992 1.21125 1.21191 1.22909 0.86738 1.01819 0.96441 0.92373 0.91509 0.92293 0.85307 0.86166 0.86416 0.86393 0.86622 0.90287 0.94069 0.91359 0.90549 0.83808 0.96953 0.92816 0.96065 0.90814 0.96420 0.96302 0.89879 0.97003 0.93277 0.94252 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.88 37.16 0.33 -0.89 16 2 C 0.11 1.16 1.97 -68.87 -0.14 1.03 16 3 H 0.05 0.48 7.77 -51.92 -0.40 0.07 16 4 C -0.08 -0.83 4.14 -104.63 -0.43 -1.26 16 5 C -0.09 -0.97 9.22 -39.58 -0.37 -1.34 16 6 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 7 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 8 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 9 C -0.12 -1.21 9.67 -39.58 -0.38 -1.59 16 10 N -0.51 -5.95 4.63 -223.89 -1.04 -6.99 16 11 C 0.04 0.42 5.37 -1.90 -0.01 0.41 16 12 C -0.15 -1.94 6.72 -24.87 -0.17 -2.11 16 13 C 0.08 1.16 3.31 -66.36 -0.22 0.94 16 14 H 0.08 1.14 7.82 -51.93 -0.41 0.73 16 15 N -0.68 -12.01 5.41 -105.30 -0.57 -12.58 16 16 C 0.08 1.59 4.44 -3.82 -0.02 1.57 16 17 C 0.07 1.67 0.57 -155.66 -0.09 1.58 16 18 C -0.12 -2.92 8.10 37.16 0.30 -2.62 16 19 C -0.13 -3.12 7.92 37.16 0.29 -2.83 16 20 C -0.51 -13.70 8.01 -34.44 -0.28 -13.97 16 21 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 22 C 0.06 1.77 5.15 -17.82 -0.09 1.67 16 23 N -0.88 -24.66 9.35 55.43 0.52 -24.14 16 24 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 C 0.05 0.67 5.76 -2.76 -0.02 0.65 16 29 H 0.06 0.46 7.03 -51.93 -0.37 0.10 16 30 H 0.07 0.61 8.10 -51.93 -0.42 0.19 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.13 1.47 7.93 -52.48 -0.42 1.06 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 35 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 36 H 0.12 1.01 7.99 -52.49 -0.42 0.59 16 37 H 0.08 0.79 7.71 -51.93 -0.40 0.39 16 38 H 0.04 0.42 8.01 -51.93 -0.42 0.01 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.08 1.05 7.56 -51.93 -0.39 0.66 16 41 H 0.34 6.15 6.14 -39.29 -0.24 5.91 16 42 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.05 1.15 8.07 -51.93 -0.42 0.73 16 44 H 0.02 0.48 7.60 -51.93 -0.39 0.08 16 45 H 0.07 1.99 6.07 -51.93 -0.32 1.68 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 49 H 0.01 0.24 6.57 -51.93 -0.34 -0.10 16 50 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 51 H 0.04 0.53 7.68 -51.93 -0.40 0.13 16 52 H 0.09 1.44 7.93 -51.93 -0.41 1.03 16 LS Contribution 396.59 15.07 5.98 5.98 Total: -1.00 -27.54 396.59 -12.00 -39.54 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -9.40 Total: 5.64 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -2.47 Total: -23.66 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: -1.09 Total: -43.71 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -27.54 -12.00 -39.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459684037.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.571 kcal (2) G-P(sol) polarization free energy of solvation -27.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds