Wall clock time and date at job start Tue Mar 31 2020 11:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.46957 * 2 1 4 4 C 1.50697 * 109.47513 * 120.00071 * 2 1 3 5 5 C 1.38231 * 119.99874 * 73.04087 * 4 2 1 6 6 C 1.38238 * 120.00357 * 180.28587 * 5 4 2 7 7 C 1.38236 * 119.99348 * 359.46445 * 6 5 4 8 8 C 1.38234 * 120.00312 * 0.25430 * 7 6 5 9 9 C 1.38235 * 120.00061 * 252.77086 * 4 2 1 10 10 N 1.46896 * 109.47337 * 240.00442 * 2 1 3 11 11 C 1.48538 * 111.00073 * 58.94512 * 10 2 1 12 12 C 1.54936 * 103.22744 * 159.72062 * 11 10 2 13 13 C 1.54598 * 102.92287 * 322.58955 * 12 11 10 14 14 H 1.09002 * 110.30570 * 263.03597 * 13 12 11 15 15 N 1.46898 * 110.30946 * 140.87275 * 13 12 11 16 16 C 1.46904 * 111.00106 * 89.28210 * 15 13 12 17 17 C 1.52998 * 109.47060 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47803 * 300.00261 * 17 16 15 19 19 C 1.53006 * 109.46711 * 60.00608 * 17 16 15 20 20 C 1.50697 * 109.47018 * 179.97438 * 17 16 15 21 21 H 1.08005 * 120.00025 * 0.02562 * 20 17 16 22 22 C 1.37880 * 120.00373 * 180.02562 * 20 17 16 23 23 N 1.31517 * 119.99721 * 0.02562 * 22 20 17 24 24 Si 1.86797 * 120.00365 * 180.02562 * 22 20 17 25 25 H 1.48492 * 109.47022 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47199 * 120.00282 * 24 22 20 27 27 H 1.48500 * 109.46918 * 239.99867 * 24 22 20 28 28 C 1.47904 * 111.00286 * 176.33944 * 10 2 1 29 29 H 1.09003 * 109.47368 * 57.82833 * 1 2 3 30 30 H 1.09000 * 109.47002 * 177.82406 * 1 2 3 31 31 H 1.08994 * 109.47577 * 297.82445 * 1 2 3 32 32 H 1.08003 * 120.00225 * 0.02562 * 5 4 2 33 33 H 1.08000 * 120.00439 * 179.74295 * 6 5 4 34 34 H 1.08003 * 120.00059 * 180.28237 * 7 6 5 35 35 H 1.07997 * 120.00233 * 180.02562 * 8 7 6 36 36 H 1.07996 * 120.00187 * 359.97438 * 9 4 2 37 37 H 1.08996 * 110.66603 * 278.15554 * 11 10 2 38 38 H 1.08996 * 110.66803 * 41.28757 * 11 10 2 39 39 H 1.08998 * 110.72675 * 204.22963 * 12 11 10 40 40 H 1.09001 * 110.72473 * 80.94630 * 12 11 10 41 41 H 1.00897 * 111.00185 * 325.33086 * 15 13 12 42 42 H 1.08994 * 109.46944 * 300.00048 * 16 15 13 43 43 H 1.08998 * 109.46993 * 59.99969 * 16 15 13 44 44 H 1.09000 * 109.46432 * 59.99667 * 18 17 16 45 45 H 1.08992 * 109.47128 * 180.02562 * 18 17 16 46 46 H 1.09006 * 109.46843 * 300.00264 * 18 17 16 47 47 H 1.08994 * 109.47168 * 59.99808 * 19 17 16 48 48 H 1.09003 * 109.47028 * 179.97438 * 19 17 16 49 49 H 1.09004 * 109.46819 * 299.99658 * 19 17 16 50 50 H 0.96996 * 120.00341 * 179.97438 * 23 22 20 51 51 H 1.08998 * 109.91772 * 333.51306 * 28 10 2 52 52 H 1.09005 * 109.91183 * 94.80043 * 28 10 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.9336 -2.0861 1.3230 6 6 2.3890 -2.7373 2.4541 7 6 2.9534 -2.0137 3.4879 8 6 3.0575 -0.6385 3.3929 9 6 2.5971 0.0131 2.2641 10 7 2.0197 -0.6924 -1.1994 11 6 1.5227 -0.0336 -2.4345 12 6 2.5132 -0.5234 -3.5206 13 6 3.8649 -0.5464 -2.7707 14 1 4.4226 0.3692 -2.9680 15 7 4.6512 -1.7202 -3.1730 16 6 5.4932 -1.4159 -4.3377 17 6 6.2956 -2.6594 -4.7257 18 6 7.1819 -3.0814 -3.5521 19 6 5.3349 -3.7980 -5.0744 20 6 7.1588 -2.3475 -5.9209 21 1 7.1375 -1.3608 -6.3596 22 6 7.9758 -3.3216 -6.4544 23 7 8.0014 -4.5233 -5.9205 24 14 9.0463 -2.9347 -7.9355 25 1 8.8349 -1.5228 -8.3438 26 1 10.4739 -3.1398 -7.5816 27 1 8.6808 -3.8344 -9.0590 28 6 3.4955 -0.6362 -1.2785 29 1 -0.3634 0.5472 -0.8699 30 1 -0.3633 -1.0269 -0.0390 31 1 -0.3634 0.4796 0.9088 32 1 1.4967 -2.6518 0.5133 33 1 2.3081 -3.8117 2.5282 34 1 3.3134 -2.5228 4.3698 35 1 3.4988 -0.0733 4.2005 36 1 2.6787 1.0874 2.1897 37 1 0.5084 -0.3605 -2.6634 38 1 1.5654 1.0510 -2.3359 39 1 2.5472 0.1765 -4.3555 40 1 2.2457 -1.5226 -3.8643 41 1 4.0522 -2.5111 -3.3566 42 1 4.8618 -1.1150 -5.1737 43 1 6.1778 -0.6050 -4.0892 44 1 6.5571 -3.3071 -2.6879 45 1 7.7538 -3.9670 -3.8288 46 1 7.8663 -2.2702 -3.3037 47 1 4.7036 -3.4974 -5.9106 48 1 5.9065 -4.6839 -5.3513 49 1 4.7101 -4.0238 -4.2102 50 1 8.5758 -5.2088 -6.2960 51 1 3.8624 0.2445 -0.7514 52 1 3.9252 -1.5385 -0.8433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459684037.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:31 Heat of formation + Delta-G solvation = 13.658782 kcal Electronic energy + Delta-G solvation = -27040.161803 eV Core-core repulsion = 23617.386129 eV Total energy + Delta-G solvation = -3422.775674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.92232 -39.59487 -38.23177 -35.93718 -34.02941 -32.40698 -31.70274 -30.41496 -30.16313 -28.17165 -27.49735 -27.23584 -25.13481 -24.67878 -23.45360 -22.38906 -21.52728 -20.81208 -20.36401 -17.91970 -17.74729 -17.28373 -16.74413 -16.68211 -16.18851 -15.90998 -15.44329 -15.22924 -14.80487 -14.72867 -14.50076 -14.16535 -14.01220 -13.96941 -13.68864 -13.55588 -13.29069 -13.19830 -12.94205 -12.91927 -12.81375 -12.60031 -12.44892 -12.33894 -12.26155 -12.19994 -12.06813 -12.02186 -11.77428 -11.67951 -11.52068 -11.30421 -10.88446 -10.58344 -10.34213 -9.73541 -9.55697 -9.34687 -9.07468 -7.96137 -6.13112 0.50521 0.59296 1.40877 1.44132 1.53490 2.46576 2.86850 3.08008 3.25853 3.39709 3.70074 3.75109 3.97621 4.05263 4.20205 4.23593 4.34316 4.36430 4.36630 4.40018 4.51731 4.63760 4.64620 4.68920 4.71622 4.77089 4.85792 4.88984 4.93145 4.97292 4.98623 5.03755 5.13005 5.19107 5.19484 5.21732 5.25094 5.30665 5.32531 5.44490 5.55245 5.62182 5.70156 5.70814 5.73319 5.78079 5.95632 6.16174 6.20779 6.22598 6.31183 6.37390 6.51266 6.67858 6.97083 7.54538 9.02179 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.002783 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.788113 B =10060.049597 C =10882.218346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.114 3.886 3 H 0.050 0.950 4 C -0.086 4.086 5 C -0.102 4.102 6 C -0.135 4.135 7 C -0.131 4.131 8 C -0.130 4.130 9 C -0.128 4.128 10 N -0.513 5.513 11 C 0.046 3.954 12 C -0.147 4.147 13 C 0.077 3.923 14 H 0.072 0.928 15 N -0.678 5.678 16 C 0.093 3.907 17 C 0.060 3.940 18 C -0.104 4.104 19 C -0.119 4.119 20 C -0.525 4.525 21 H 0.044 0.956 22 C 0.022 3.978 23 N -0.904 5.904 24 Si 0.944 3.056 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.283 1.283 28 C 0.061 3.939 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.130 0.870 37 H 0.093 0.907 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.340 0.660 42 H 0.010 0.990 43 H 0.045 0.955 44 H 0.032 0.968 45 H 0.047 0.953 46 H 0.008 0.992 47 H 0.017 0.983 48 H 0.055 0.945 49 H 0.031 0.969 50 H 0.257 0.743 51 H 0.041 0.959 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.137 9.439 15.969 24.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.005 3.995 3 H 0.068 0.932 4 C -0.086 4.086 5 C -0.120 4.120 6 C -0.153 4.153 7 C -0.149 4.149 8 C -0.147 4.147 9 C -0.146 4.146 10 N -0.238 5.238 11 C -0.082 4.082 12 C -0.187 4.187 13 C -0.035 4.035 14 H 0.090 0.910 15 N -0.310 5.310 16 C -0.036 4.036 17 C 0.060 3.940 18 C -0.162 4.162 19 C -0.177 4.177 20 C -0.564 4.564 21 H 0.063 0.937 22 C -0.177 4.177 23 N -0.543 5.543 24 Si 0.771 3.229 25 H -0.196 1.196 26 H -0.210 1.210 27 H -0.209 1.209 28 C -0.067 4.067 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.148 0.852 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.148 0.852 37 H 0.111 0.889 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.161 0.839 42 H 0.028 0.972 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.066 0.934 46 H 0.028 0.972 47 H 0.036 0.964 48 H 0.073 0.927 49 H 0.050 0.950 50 H 0.066 0.934 51 H 0.060 0.940 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -15.729 8.854 16.436 24.412 hybrid contribution 0.646 0.769 -1.715 1.987 sum -15.082 9.623 14.721 23.169 Atomic orbital electron populations 1.21797 0.92186 1.02715 1.02498 1.20757 0.96591 0.94436 0.87669 0.93193 1.19849 0.99188 0.94173 0.95397 1.21080 0.99173 0.94264 0.97498 1.21433 0.99125 1.00706 0.94074 1.21433 0.99400 0.94611 0.99418 1.21371 1.00038 0.94949 0.98384 1.21250 0.98997 1.00347 0.94012 1.64835 1.06457 1.50841 1.01622 1.23146 0.99275 0.97013 0.88755 1.23180 0.95413 1.01909 0.98159 1.22436 0.92755 0.93724 0.94556 0.90967 1.60564 1.26020 1.06416 1.37949 1.21791 0.94236 0.98180 0.89345 1.18133 0.92067 0.91081 0.92739 1.21458 0.98493 0.99626 0.96634 1.21646 0.97517 1.01385 0.97150 1.21473 1.24005 0.96991 1.13944 0.93738 1.25544 0.97926 0.95079 0.99190 1.69978 1.39573 1.03310 1.41432 0.85721 0.78827 0.78130 0.80201 1.19621 1.20972 1.20855 1.22659 0.88092 1.00764 0.95188 0.91366 0.92175 0.91400 0.86140 0.85166 0.84543 0.84358 0.85247 0.88870 0.92833 0.90801 0.91456 0.83926 0.97179 0.93695 0.94894 0.93384 0.97242 0.96400 0.92650 0.94974 0.93355 0.94037 0.91202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.88 71.98 0.64 -1.42 16 2 C 0.11 2.15 1.97 44.17 0.09 2.23 16 3 H 0.05 0.92 7.77 -2.38 -0.02 0.90 16 4 C -0.09 -1.78 4.14 -19.87 -0.08 -1.86 16 5 C -0.10 -2.25 9.22 22.27 0.21 -2.05 16 6 C -0.14 -2.75 10.05 22.27 0.22 -2.52 16 7 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 8 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 9 C -0.13 -2.42 9.67 22.27 0.22 -2.21 16 10 N -0.51 -11.24 4.63 -862.26 -3.99 -15.23 16 11 C 0.05 0.89 5.37 86.65 0.47 1.36 16 12 C -0.15 -3.52 6.72 31.80 0.21 -3.31 16 13 C 0.08 2.17 3.31 45.79 0.15 2.32 16 14 H 0.07 2.10 7.82 -2.39 -0.02 2.09 16 15 N -0.68 -23.72 5.41 -487.05 -2.64 -26.36 16 16 C 0.09 3.87 4.44 86.30 0.38 4.25 16 17 C 0.06 2.94 0.57 -52.93 -0.03 2.91 16 18 C -0.10 -5.19 8.10 71.98 0.58 -4.61 16 19 C -0.12 -5.66 7.92 71.98 0.57 -5.09 16 20 C -0.53 -28.61 8.01 25.60 0.21 -28.41 16 21 H 0.04 2.43 7.74 -2.91 -0.02 2.40 16 22 C 0.02 1.18 5.15 84.65 0.44 1.61 16 23 N -0.90 -50.96 9.35 21.45 0.20 -50.76 16 24 Si 0.94 43.66 29.54 68.60 2.03 45.69 16 25 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 26 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 27 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 28 C 0.06 1.61 5.76 86.44 0.50 2.11 16 29 H 0.07 0.90 7.03 -2.39 -0.02 0.89 16 30 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.12 2.77 7.93 -2.91 -0.02 2.75 16 33 H 0.13 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 35 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 36 H 0.13 2.01 7.99 -2.91 -0.02 1.99 16 37 H 0.09 1.60 7.71 -2.39 -0.02 1.58 16 38 H 0.05 0.94 8.01 -2.39 -0.02 0.92 16 39 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 1.75 7.56 -2.39 -0.02 1.74 16 41 H 0.34 12.02 6.14 -89.70 -0.55 11.47 16 42 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.04 1.92 8.07 -2.39 -0.02 1.90 16 44 H 0.03 1.51 7.60 -2.39 -0.02 1.49 16 45 H 0.05 2.63 6.07 -2.39 -0.01 2.61 16 46 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 47 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.05 2.95 6.07 -2.39 -0.01 2.93 16 49 H 0.03 1.35 6.57 -2.39 -0.02 1.33 16 50 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 51 H 0.04 1.06 7.68 -2.39 -0.02 1.04 16 52 H 0.07 2.16 7.93 -2.38 -0.02 2.15 16 Total: -1.00 -58.40 396.59 1.13 -57.27 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.32 Total: 28.32 kcal Atomic # 6 Polarization: -44.14 SS G_CDS: 5.21 Total: -38.93 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -6.43 Total: -92.35 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -58.40 1.13 -57.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459684037.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.932 kcal (2) G-P(sol) polarization free energy of solvation -58.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds