Wall clock time and date at job start Tue Mar 31 2020 11:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 110.01643 * 2 1 4 4 C 1.54319 * 109.88871 * 121.11890 * 2 1 3 5 5 C 1.55148 * 103.01934 * 141.68951 * 4 2 1 6 6 H 1.08997 * 110.99189 * 82.47915 * 5 4 2 7 7 N 1.46901 * 110.98962 * 206.25265 * 5 4 2 8 8 C 1.46894 * 111.00307 * 204.99893 * 7 5 4 9 9 C 1.52998 * 109.47529 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.46943 * 300.00219 * 9 8 7 11 11 C 1.52997 * 109.47006 * 59.99695 * 9 8 7 12 12 C 1.50698 * 109.47083 * 180.02562 * 9 8 7 13 13 H 1.07998 * 120.00346 * 357.37158 * 12 9 8 14 14 C 1.37877 * 119.99664 * 177.38170 * 12 9 8 15 15 N 1.31517 * 120.00263 * 2.49262 * 14 12 9 16 16 Si 1.86807 * 120.00025 * 182.49505 * 14 12 9 17 17 H 1.48492 * 109.47195 * 94.98328 * 16 14 12 18 18 H 1.48497 * 109.47384 * 214.98779 * 16 14 12 19 19 H 1.48507 * 109.46905 * 334.98486 * 16 14 12 20 20 C 1.54899 * 101.65128 * 324.34667 * 5 4 2 21 21 N 1.47449 * 109.88990 * 238.88541 * 2 1 3 22 22 C 1.46899 * 110.99684 * 3.85555 * 21 2 1 23 23 C 1.50700 * 109.47085 * 171.50057 * 22 21 2 24 24 C 1.38244 * 119.99870 * 269.72542 * 23 22 21 25 25 C 1.38234 * 120.00085 * 179.78425 * 24 23 22 26 26 C 1.38236 * 119.99931 * 0.46863 * 25 24 23 27 27 C 1.38231 * 119.99822 * 359.75826 * 26 25 24 28 28 C 1.38232 * 120.00549 * 0.02962 * 27 26 25 29 29 H 1.09000 * 109.47151 * 176.13262 * 1 2 3 30 30 H 1.08994 * 109.47201 * 296.13378 * 1 2 3 31 31 H 1.09009 * 109.47237 * 56.13760 * 1 2 3 32 32 H 1.09003 * 110.70479 * 260.06765 * 4 2 1 33 33 H 1.09003 * 110.70793 * 23.13406 * 4 2 1 34 34 H 1.00902 * 110.99908 * 81.04793 * 7 5 4 35 35 H 1.08998 * 109.47237 * 300.00758 * 8 7 5 36 36 H 1.09003 * 109.46815 * 59.99964 * 8 7 5 37 37 H 1.09003 * 109.47480 * 54.19340 * 10 9 8 38 38 H 1.08996 * 109.47243 * 174.20112 * 10 9 8 39 39 H 1.09008 * 109.46922 * 294.19619 * 10 9 8 40 40 H 1.08997 * 109.46880 * 60.00738 * 11 9 8 41 41 H 1.09005 * 109.47077 * 179.97438 * 11 9 8 42 42 H 1.08995 * 109.47765 * 300.00352 * 11 9 8 43 43 H 0.97001 * 119.99927 * 180.02562 * 15 14 12 44 44 H 1.09003 * 110.37610 * 278.23920 * 20 5 4 45 45 H 1.09001 * 110.37188 * 155.90209 * 20 5 4 46 46 H 1.08996 * 109.47483 * 51.49798 * 22 21 2 47 47 H 1.09004 * 109.47086 * 291.49553 * 22 21 2 48 48 H 1.08006 * 119.99660 * 359.97438 * 24 23 22 49 49 H 1.07999 * 119.99661 * 180.24793 * 25 24 23 50 50 H 1.07994 * 119.99768 * 179.79222 * 26 25 24 51 51 H 1.08006 * 120.00034 * 180.02562 * 27 26 25 52 52 H 1.07997 * 120.00805 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0549 -0.7500 1.2423 5 6 3.2891 -1.5135 0.6940 6 1 4.1659 -0.8667 0.6620 7 7 3.5573 -2.7197 1.4884 8 6 4.9708 -3.1086 1.3944 9 6 5.2106 -4.3660 2.2323 10 6 4.8562 -4.0808 3.6931 11 6 4.3327 -5.5038 1.7073 12 6 6.6608 -4.7645 2.1363 13 1 7.3340 -4.2046 1.5042 14 6 7.1281 -5.8440 2.8555 15 7 6.2986 -6.5558 3.5869 16 14 8.9396 -6.2957 2.7912 17 1 9.6456 -5.6749 3.9407 18 1 9.0845 -7.7720 2.8599 19 1 9.5288 -5.7991 1.5217 20 6 2.8188 -1.8833 -0.7349 21 7 2.0315 -0.7165 -1.1871 22 6 0.9239 -1.1339 -2.0570 23 6 1.4772 -1.6729 -3.3510 24 6 1.6847 -0.8229 -4.4213 25 6 2.1964 -1.3165 -5.6068 26 6 2.4914 -2.6618 -5.7253 27 6 2.2794 -3.5125 -4.6567 28 6 1.7719 -3.0183 -3.4697 29 1 -0.3633 -1.0253 -0.0693 30 1 -0.3633 0.4526 0.9225 31 1 -0.3634 0.5727 -0.8534 32 1 2.3514 -0.0465 2.0204 33 1 1.3043 -1.4451 1.6187 34 1 2.9542 -3.4786 1.2083 35 1 5.2232 -3.3121 0.3538 36 1 5.5962 -2.2978 1.7681 37 1 3.8388 -3.6938 3.7513 38 1 4.9281 -5.0022 4.2710 39 1 5.5492 -3.3431 4.0977 40 1 4.5853 -5.7070 0.6667 41 1 4.5040 -6.3998 2.3040 42 1 3.2839 -5.2154 1.7770 43 1 6.6274 -7.3151 4.0931 44 1 2.1939 -2.7760 -0.7096 45 1 3.6772 -2.0383 -1.3886 46 1 0.2825 -0.2775 -2.2649 47 1 0.3433 -1.9103 -1.5588 48 1 1.4500 0.2274 -4.3302 49 1 2.3623 -0.6516 -6.4416 50 1 2.8880 -3.0479 -6.6526 51 1 2.5103 -4.5636 -4.7491 52 1 1.6059 -3.6830 -2.6349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459730189.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:44 Heat of formation + Delta-G solvation = 29.822465 kcal Electronic energy + Delta-G solvation = -27173.437129 eV Core-core repulsion = 23751.362364 eV Total energy + Delta-G solvation = -3422.074764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.13014 -38.77634 -36.70041 -34.17400 -32.68352 -31.30681 -30.96605 -30.20950 -28.89197 -25.59667 -25.56942 -25.27835 -25.11567 -23.46662 -22.64876 -21.48076 -20.58777 -19.52487 -18.48623 -16.95211 -16.40534 -15.99184 -15.57145 -15.44572 -15.00394 -14.80791 -14.37776 -14.01476 -13.81804 -13.58273 -13.39817 -13.14528 -12.79396 -12.75134 -12.51741 -12.39629 -12.33409 -11.99566 -11.76915 -11.42007 -11.39797 -11.13866 -11.05215 -10.98046 -10.92973 -10.79978 -10.64185 -10.59621 -10.45543 -10.16290 -10.05210 -9.38113 -9.04440 -8.99521 -8.88260 -8.61754 -8.35846 -8.27913 -7.65006 -5.90603 -4.00126 1.24436 1.32764 3.32053 3.39339 3.42461 3.59046 4.04228 4.45158 4.55897 4.68266 4.69517 4.80688 4.89675 4.92797 5.03039 5.14574 5.15557 5.26216 5.28697 5.35511 5.38270 5.45561 5.47912 5.56441 5.61224 5.70901 5.86189 5.94294 5.94860 5.99502 6.08605 6.19431 6.34400 6.36198 6.37836 6.42705 6.44367 6.52757 6.71899 6.88335 6.89821 6.95316 7.02380 7.07611 7.17399 7.38169 7.48466 7.74787 7.76528 7.84695 7.95980 8.20641 8.34706 8.56578 9.01382 9.64809 11.10456 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013426 B = 0.003254 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.960068 B = 8603.973682 C =10070.141494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.066 3.934 3 H 0.085 0.915 4 C -0.126 4.126 5 C 0.080 3.920 6 H 0.086 0.914 7 N -0.674 5.674 8 C 0.076 3.924 9 C 0.069 3.931 10 C -0.120 4.120 11 C -0.130 4.130 12 C -0.507 4.507 13 H 0.052 0.948 14 C 0.066 3.934 15 N -0.885 5.885 16 Si 0.887 3.113 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.019 3.981 21 N -0.516 5.516 22 C 0.086 3.914 23 C -0.076 4.076 24 C -0.102 4.102 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.119 4.119 28 C -0.111 4.111 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.337 0.663 35 H 0.014 0.986 36 H 0.056 0.944 37 H 0.021 0.979 38 H 0.072 0.928 39 H 0.019 0.981 40 H 0.018 0.982 41 H 0.081 0.919 42 H 0.009 0.991 43 H 0.257 0.743 44 H 0.045 0.955 45 H 0.076 0.924 46 H 0.085 0.915 47 H 0.045 0.955 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.119 0.881 51 H 0.121 0.879 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.268 11.157 -13.387 21.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.042 4.042 3 H 0.103 0.897 4 C -0.165 4.165 5 C -0.032 4.032 6 H 0.104 0.896 7 N -0.304 5.304 8 C -0.052 4.052 9 C 0.068 3.932 10 C -0.177 4.177 11 C -0.188 4.188 12 C -0.546 4.546 13 H 0.070 0.930 14 C -0.135 4.135 15 N -0.524 5.524 16 Si 0.716 3.284 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.201 1.201 20 C -0.111 4.111 21 N -0.241 5.241 22 C -0.042 4.042 23 C -0.076 4.076 24 C -0.120 4.120 25 C -0.142 4.142 26 C -0.142 4.142 27 C -0.137 4.137 28 C -0.130 4.130 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.157 0.843 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.040 0.960 38 H 0.091 0.909 39 H 0.038 0.962 40 H 0.038 0.962 41 H 0.099 0.901 42 H 0.028 0.972 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.094 0.906 46 H 0.103 0.897 47 H 0.063 0.937 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.137 0.863 51 H 0.139 0.861 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.861 11.666 -12.945 21.658 hybrid contribution 0.658 -1.240 -0.563 1.513 sum -12.204 10.426 -13.508 20.978 Atomic orbital electron populations 1.22369 0.96077 1.02063 1.02149 1.22458 0.93600 0.98863 0.89242 0.89698 1.22839 0.97809 0.99086 0.96725 1.22705 0.97546 0.93864 0.89092 0.89606 1.60636 1.07523 1.06322 1.55955 1.22178 0.85835 0.99483 0.97747 1.18088 0.94496 0.88659 0.91920 1.21650 0.96495 1.00822 0.98762 1.21821 0.95059 1.02851 0.99050 1.21119 0.93906 1.13041 1.26493 0.92994 1.24881 0.97174 0.96128 0.95331 1.69856 1.33604 1.18677 1.30236 0.86657 0.85987 0.77499 0.78280 1.20839 1.21354 1.20052 1.23827 0.97631 0.91736 0.97897 1.63718 1.20968 1.23254 1.16123 1.21322 0.92727 0.99369 0.90753 1.19816 0.99241 0.93390 0.95186 1.20984 0.99020 0.99307 0.92726 1.21126 0.99730 0.95556 0.97763 1.21134 1.00412 0.93852 0.98791 1.21147 0.99354 0.99876 0.93359 1.21111 0.99136 0.95102 0.97656 0.92342 0.91980 0.92166 0.90729 0.91049 0.84346 0.96796 0.92508 0.96021 0.90886 0.96171 0.96237 0.90066 0.97198 0.93251 0.93647 0.90573 0.89651 0.93676 0.86203 0.86293 0.86335 0.86123 0.86402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 7.83 37.15 0.29 -1.19 16 2 C 0.07 0.72 4.02 -66.73 -0.27 0.45 16 3 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.13 -1.55 6.17 -24.90 -0.15 -1.71 16 5 C 0.08 1.17 3.38 -65.57 -0.22 0.95 16 6 H 0.09 1.35 7.83 -51.93 -0.41 0.94 16 7 N -0.67 -11.76 5.52 -104.48 -0.58 -12.33 16 8 C 0.08 1.57 4.45 -3.83 -0.02 1.56 16 9 C 0.07 1.66 0.57 -155.66 -0.09 1.57 16 10 C -0.12 -2.92 8.05 37.16 0.30 -2.62 16 11 C -0.13 -3.04 7.95 37.16 0.30 -2.75 16 12 C -0.51 -13.68 8.01 -34.44 -0.28 -13.96 16 13 H 0.05 1.41 7.75 -52.49 -0.41 1.00 16 14 C 0.07 1.79 5.14 -17.82 -0.09 1.70 16 15 N -0.88 -24.56 9.43 55.43 0.52 -24.04 16 16 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 C 0.02 0.25 5.16 -2.31 -0.01 0.24 16 21 N -0.52 -6.16 5.16 -224.79 -1.16 -7.33 16 22 C 0.09 0.90 3.83 -4.98 -0.02 0.88 16 23 C -0.08 -0.86 5.07 -104.62 -0.53 -1.39 16 24 C -0.10 -1.07 9.70 -39.58 -0.38 -1.45 16 25 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 26 C -0.12 -1.25 10.05 -39.58 -0.40 -1.64 16 27 C -0.12 -1.30 10.05 -39.59 -0.40 -1.70 16 28 C -0.11 -1.29 8.87 -39.58 -0.35 -1.64 16 29 H 0.06 0.54 6.65 -51.93 -0.35 0.19 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.47 6.68 -51.92 -0.35 0.13 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.07 0.91 7.85 -51.93 -0.41 0.50 16 34 H 0.34 5.86 6.23 -39.29 -0.24 5.61 16 35 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 1.22 8.09 -51.93 -0.42 0.80 16 37 H 0.02 0.48 7.43 -51.93 -0.39 0.09 16 38 H 0.07 1.94 6.15 -51.93 -0.32 1.63 16 39 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 2.12 6.19 -51.93 -0.32 1.80 16 42 H 0.01 0.19 6.57 -51.93 -0.34 -0.15 16 43 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.05 0.62 6.50 -51.93 -0.34 0.29 16 45 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.09 0.79 6.21 -51.93 -0.32 0.46 16 47 H 0.05 0.48 6.62 -51.93 -0.34 0.13 16 48 H 0.12 1.09 8.06 -52.48 -0.42 0.66 16 49 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 50 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 51 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 52 H 0.12 1.33 7.41 -52.49 -0.39 0.94 16 LS Contribution 390.98 15.07 5.89 5.89 Total: -1.00 -27.65 390.98 -12.19 -39.84 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -9.12 Total: 6.10 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: -2.72 Total: -24.33 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: -1.22 Total: -43.70 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -27.65 -12.19 -39.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459730189.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.663 kcal (2) G-P(sol) polarization free energy of solvation -27.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds