Wall clock time and date at job start Tue Mar 31 2020 11:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 110.01643 * 2 1 4 4 C 1.54319 * 109.88871 * 121.11890 * 2 1 3 5 5 C 1.55148 * 103.01934 * 141.68951 * 4 2 1 6 6 H 1.08997 * 110.99189 * 82.47915 * 5 4 2 7 7 N 1.46901 * 110.98962 * 206.25265 * 5 4 2 8 8 C 1.46894 * 111.00307 * 204.99893 * 7 5 4 9 9 C 1.52998 * 109.47529 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.46943 * 300.00219 * 9 8 7 11 11 C 1.52997 * 109.47006 * 59.99695 * 9 8 7 12 12 C 1.50698 * 109.47083 * 180.02562 * 9 8 7 13 13 H 1.07998 * 120.00346 * 357.37158 * 12 9 8 14 14 C 1.37877 * 119.99664 * 177.38170 * 12 9 8 15 15 N 1.31517 * 120.00263 * 2.49262 * 14 12 9 16 16 Si 1.86807 * 120.00025 * 182.49505 * 14 12 9 17 17 H 1.48492 * 109.47195 * 94.98328 * 16 14 12 18 18 H 1.48497 * 109.47384 * 214.98779 * 16 14 12 19 19 H 1.48507 * 109.46905 * 334.98486 * 16 14 12 20 20 C 1.54899 * 101.65128 * 324.34667 * 5 4 2 21 21 N 1.47449 * 109.88990 * 238.88541 * 2 1 3 22 22 C 1.46899 * 110.99684 * 3.85555 * 21 2 1 23 23 C 1.50700 * 109.47085 * 171.50057 * 22 21 2 24 24 C 1.38244 * 119.99870 * 269.72542 * 23 22 21 25 25 C 1.38234 * 120.00085 * 179.78425 * 24 23 22 26 26 C 1.38236 * 119.99931 * 0.46863 * 25 24 23 27 27 C 1.38231 * 119.99822 * 359.75826 * 26 25 24 28 28 C 1.38232 * 120.00549 * 0.02962 * 27 26 25 29 29 H 1.09000 * 109.47151 * 176.13262 * 1 2 3 30 30 H 1.08994 * 109.47201 * 296.13378 * 1 2 3 31 31 H 1.09009 * 109.47237 * 56.13760 * 1 2 3 32 32 H 1.09003 * 110.70479 * 260.06765 * 4 2 1 33 33 H 1.09003 * 110.70793 * 23.13406 * 4 2 1 34 34 H 1.00902 * 110.99908 * 81.04793 * 7 5 4 35 35 H 1.08998 * 109.47237 * 300.00758 * 8 7 5 36 36 H 1.09003 * 109.46815 * 59.99964 * 8 7 5 37 37 H 1.09003 * 109.47480 * 54.19340 * 10 9 8 38 38 H 1.08996 * 109.47243 * 174.20112 * 10 9 8 39 39 H 1.09008 * 109.46922 * 294.19619 * 10 9 8 40 40 H 1.08997 * 109.46880 * 60.00738 * 11 9 8 41 41 H 1.09005 * 109.47077 * 179.97438 * 11 9 8 42 42 H 1.08995 * 109.47765 * 300.00352 * 11 9 8 43 43 H 0.97001 * 119.99927 * 180.02562 * 15 14 12 44 44 H 1.09003 * 110.37610 * 278.23920 * 20 5 4 45 45 H 1.09001 * 110.37188 * 155.90209 * 20 5 4 46 46 H 1.08996 * 109.47483 * 51.49798 * 22 21 2 47 47 H 1.09004 * 109.47086 * 291.49553 * 22 21 2 48 48 H 1.08006 * 119.99660 * 359.97438 * 24 23 22 49 49 H 1.07999 * 119.99661 * 180.24793 * 25 24 23 50 50 H 1.07994 * 119.99768 * 179.79222 * 26 25 24 51 51 H 1.08006 * 120.00034 * 180.02562 * 27 26 25 52 52 H 1.07997 * 120.00805 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9030 1.0242 0.0000 4 6 2.0549 -0.7500 1.2423 5 6 3.2891 -1.5135 0.6940 6 1 4.1659 -0.8667 0.6620 7 7 3.5573 -2.7197 1.4884 8 6 4.9708 -3.1086 1.3944 9 6 5.2106 -4.3660 2.2323 10 6 4.8562 -4.0808 3.6931 11 6 4.3327 -5.5038 1.7073 12 6 6.6608 -4.7645 2.1363 13 1 7.3340 -4.2046 1.5042 14 6 7.1281 -5.8440 2.8555 15 7 6.2986 -6.5558 3.5869 16 14 8.9396 -6.2957 2.7912 17 1 9.6456 -5.6749 3.9407 18 1 9.0845 -7.7720 2.8599 19 1 9.5288 -5.7991 1.5217 20 6 2.8188 -1.8833 -0.7349 21 7 2.0315 -0.7165 -1.1871 22 6 0.9239 -1.1339 -2.0570 23 6 1.4772 -1.6729 -3.3510 24 6 1.6847 -0.8229 -4.4213 25 6 2.1964 -1.3165 -5.6068 26 6 2.4914 -2.6618 -5.7253 27 6 2.2794 -3.5125 -4.6567 28 6 1.7719 -3.0183 -3.4697 29 1 -0.3633 -1.0253 -0.0693 30 1 -0.3633 0.4526 0.9225 31 1 -0.3634 0.5727 -0.8534 32 1 2.3514 -0.0465 2.0204 33 1 1.3043 -1.4451 1.6187 34 1 2.9542 -3.4786 1.2083 35 1 5.2232 -3.3121 0.3538 36 1 5.5962 -2.2978 1.7681 37 1 3.8388 -3.6938 3.7513 38 1 4.9281 -5.0022 4.2710 39 1 5.5492 -3.3431 4.0977 40 1 4.5853 -5.7070 0.6667 41 1 4.5040 -6.3998 2.3040 42 1 3.2839 -5.2154 1.7770 43 1 6.6274 -7.3151 4.0931 44 1 2.1939 -2.7760 -0.7096 45 1 3.6772 -2.0383 -1.3886 46 1 0.2825 -0.2775 -2.2649 47 1 0.3433 -1.9103 -1.5588 48 1 1.4500 0.2274 -4.3302 49 1 2.3623 -0.6516 -6.4416 50 1 2.8880 -3.0479 -6.6526 51 1 2.5103 -4.5636 -4.7491 52 1 1.6059 -3.6830 -2.6349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459730189.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:43 Heat of formation + Delta-G solvation = 15.754372 kcal Electronic energy + Delta-G solvation = -27174.047167 eV Core-core repulsion = 23751.362364 eV Total energy + Delta-G solvation = -3422.684803 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.06602 -39.67966 -38.36366 -35.64546 -33.77935 -32.89370 -31.79198 -31.20284 -30.11173 -27.52324 -27.25864 -26.49765 -26.32119 -24.96492 -23.46315 -22.34303 -21.73454 -20.46682 -20.31300 -17.96270 -17.78012 -17.31369 -16.84126 -16.55337 -16.30045 -15.98830 -15.63974 -15.08495 -15.04556 -14.94430 -14.39495 -14.28141 -14.16047 -14.07271 -13.71325 -13.51687 -13.31115 -13.28434 -13.10533 -12.94084 -12.77972 -12.61325 -12.47814 -12.29066 -12.27056 -12.09275 -12.03629 -11.93768 -11.75972 -11.63798 -11.60294 -11.31983 -10.87157 -10.60977 -10.35246 -9.79797 -9.70608 -9.36082 -9.02622 -7.97873 -6.13885 0.44281 0.52494 1.40934 1.43423 1.51871 2.45674 2.73695 3.08055 3.24712 3.54788 3.68734 3.71050 3.94966 3.99259 4.13293 4.17734 4.20638 4.29248 4.33763 4.40389 4.53545 4.56095 4.60284 4.62192 4.62887 4.70370 4.78647 4.84141 4.87115 4.90970 5.00250 5.07327 5.12199 5.16312 5.17375 5.19562 5.23954 5.27925 5.41161 5.42758 5.54083 5.57924 5.63955 5.69958 5.70606 5.76439 5.97207 6.09530 6.17469 6.17774 6.25940 6.33013 6.47919 6.61598 6.95382 7.53558 9.00826 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.013426 B = 0.003254 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.960068 B = 8603.973682 C =10070.141494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.069 3.931 3 H 0.091 0.909 4 C -0.118 4.118 5 C 0.076 3.924 6 H 0.075 0.925 7 N -0.672 5.672 8 C 0.093 3.907 9 C 0.061 3.939 10 C -0.106 4.106 11 C -0.117 4.117 12 C -0.528 4.528 13 H 0.043 0.957 14 C 0.024 3.976 15 N -0.903 5.903 16 Si 0.943 3.057 17 H -0.280 1.280 18 H -0.284 1.284 19 H -0.274 1.274 20 C 0.032 3.968 21 N -0.522 5.522 22 C 0.089 3.911 23 C -0.089 4.089 24 C -0.110 4.110 25 C -0.128 4.128 26 C -0.130 4.130 27 C -0.134 4.134 28 C -0.129 4.129 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.338 0.662 35 H 0.006 0.994 36 H 0.047 0.953 37 H 0.037 0.963 38 H 0.048 0.952 39 H 0.008 0.992 40 H 0.015 0.985 41 H 0.053 0.947 42 H 0.033 0.967 43 H 0.257 0.743 44 H 0.043 0.957 45 H 0.055 0.945 46 H 0.103 0.897 47 H 0.045 0.955 48 H 0.135 0.865 49 H 0.142 0.858 50 H 0.138 0.862 51 H 0.128 0.872 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.243 12.548 -14.444 23.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.038 4.038 3 H 0.109 0.891 4 C -0.157 4.157 5 C -0.035 4.035 6 H 0.093 0.907 7 N -0.302 5.302 8 C -0.036 4.036 9 C 0.060 3.940 10 C -0.163 4.163 11 C -0.175 4.175 12 C -0.566 4.566 13 H 0.061 0.939 14 C -0.175 4.175 15 N -0.542 5.542 16 Si 0.770 3.230 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.098 4.098 21 N -0.246 5.246 22 C -0.038 4.038 23 C -0.089 4.089 24 C -0.129 4.129 25 C -0.146 4.146 26 C -0.149 4.149 27 C -0.152 4.152 28 C -0.148 4.148 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.158 0.842 35 H 0.024 0.976 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.027 0.973 40 H 0.035 0.965 41 H 0.072 0.928 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.121 0.879 47 H 0.063 0.937 48 H 0.153 0.847 49 H 0.160 0.840 50 H 0.156 0.844 51 H 0.146 0.854 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -13.849 13.069 -14.007 23.639 hybrid contribution 0.950 -1.647 -0.271 1.920 sum -12.900 11.423 -14.278 22.377 Atomic orbital electron populations 1.22317 0.94222 1.02217 1.03337 1.22485 0.95076 0.98541 0.87728 0.89075 1.22788 0.96406 0.98880 0.97599 1.22737 0.98330 0.92612 0.89827 0.90715 1.60582 1.05486 1.07158 1.57014 1.21808 0.87809 0.97595 0.96405 1.18131 0.93299 0.90255 0.92301 1.21481 0.97110 0.99192 0.98559 1.21637 0.96400 1.01402 0.98100 1.21437 0.95466 1.13233 1.26508 0.93912 1.25517 1.00643 0.96191 0.95193 1.69981 1.34884 1.18803 1.30524 0.85785 0.81838 0.77220 0.78197 1.20565 1.20982 1.19839 1.23555 0.97185 0.92474 0.96571 1.63693 1.21808 1.22358 1.16737 1.21353 0.92282 1.00031 0.90097 1.19975 0.99678 0.93397 0.95877 1.21243 0.98875 1.00009 0.92729 1.21465 0.98911 0.95869 0.98319 1.21439 1.00059 0.94067 0.99292 1.21372 0.99609 1.00654 0.93605 1.21210 1.00099 0.95557 0.97942 0.92715 0.90984 0.90793 0.90357 0.91140 0.84204 0.97598 0.93486 0.94356 0.93294 0.97286 0.96543 0.92789 0.94823 0.93329 0.93844 0.92691 0.87854 0.93732 0.84719 0.83986 0.84382 0.85384 0.86985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 7.83 71.98 0.56 -1.84 16 2 C 0.07 1.34 4.02 45.25 0.18 1.52 16 3 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 4 C -0.12 -2.72 6.17 31.78 0.20 -2.52 16 5 C 0.08 2.19 3.38 46.30 0.16 2.34 16 6 H 0.07 2.33 7.83 -2.39 -0.02 2.31 16 7 N -0.67 -23.09 5.52 -484.46 -2.68 -25.76 16 8 C 0.09 3.88 4.45 86.30 0.38 4.26 16 9 C 0.06 2.94 0.57 -52.93 -0.03 2.91 16 10 C -0.11 -5.18 8.05 71.98 0.58 -4.60 16 11 C -0.12 -5.52 7.95 71.98 0.57 -4.95 16 12 C -0.53 -28.85 8.01 25.60 0.21 -28.64 16 13 H 0.04 2.35 7.75 -2.91 -0.02 2.33 16 14 C 0.02 1.30 5.14 84.65 0.44 1.73 16 15 N -0.90 -50.69 9.43 21.45 0.20 -50.49 16 16 Si 0.94 43.79 29.54 68.60 2.03 45.81 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 19 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 20 C 0.03 0.86 5.16 86.77 0.45 1.31 16 21 N -0.52 -11.68 5.16 -865.10 -4.47 -16.15 16 22 C 0.09 1.73 3.83 85.56 0.33 2.06 16 23 C -0.09 -1.91 5.07 -19.86 -0.10 -2.01 16 24 C -0.11 -2.12 9.70 22.27 0.22 -1.91 16 25 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 26 C -0.13 -2.45 10.05 22.27 0.22 -2.23 16 27 C -0.13 -2.88 10.05 22.27 0.22 -2.65 16 28 C -0.13 -2.98 8.87 22.27 0.20 -2.79 16 29 H 0.05 0.87 6.65 -2.39 -0.02 0.85 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.91 6.68 -2.38 -0.02 0.89 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 1.66 7.85 -2.39 -0.02 1.64 16 34 H 0.34 11.48 6.23 -89.69 -0.56 10.92 16 35 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 36 H 0.05 2.04 8.09 -2.39 -0.02 2.02 16 37 H 0.04 1.70 7.43 -2.39 -0.02 1.68 16 38 H 0.05 2.63 6.15 -2.39 -0.01 2.61 16 39 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 40 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.05 2.84 6.19 -2.38 -0.01 2.82 16 42 H 0.03 1.37 6.57 -2.39 -0.02 1.36 16 43 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 44 H 0.04 1.18 6.50 -2.39 -0.02 1.16 16 45 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.10 1.62 6.21 -2.39 -0.01 1.60 16 47 H 0.04 0.87 6.62 -2.38 -0.02 0.86 16 48 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 49 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 50 H 0.14 1.96 8.06 -2.91 -0.02 1.93 16 51 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 52 H 0.11 2.59 7.41 -2.91 -0.02 2.57 16 Total: -1.00 -58.95 390.98 0.41 -58.54 By element: Atomic # 1 Polarization: 27.79 SS G_CDS: 0.32 Total: 28.11 kcal Atomic # 6 Polarization: -45.07 SS G_CDS: 5.00 Total: -40.07 kcal Atomic # 7 Polarization: -85.46 SS G_CDS: -6.94 Total: -92.40 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -58.95 0.41 -58.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459730189.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.292 kcal (2) G-P(sol) polarization free energy of solvation -58.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds