Wall clock time and date at job start Tue Mar 31 2020 11:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.91087 * 2 1 4 4 C 1.54002 * 109.91606 * 238.89336 * 2 1 3 5 5 C 1.54591 * 105.14001 * 239.42560 * 4 2 1 6 6 H 1.08996 * 110.72692 * 96.40569 * 5 4 2 7 7 N 1.46896 * 110.87618 * 219.61656 * 5 4 2 8 8 C 1.46901 * 111.00182 * 200.04507 * 7 5 4 9 9 C 1.53006 * 109.47339 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.46821 * 300.00107 * 9 8 7 11 11 C 1.52998 * 109.46886 * 59.99787 * 9 8 7 12 12 C 1.50695 * 109.46978 * 179.97438 * 9 8 7 13 13 H 1.07998 * 120.00147 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99692 * 179.97438 * 12 9 8 15 15 N 1.31520 * 120.00352 * 0.02562 * 14 12 9 16 16 Si 1.86807 * 120.00001 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.46919 * 60.00027 * 16 14 12 18 18 H 1.48499 * 109.47136 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47273 * 300.00147 * 16 14 12 20 20 C 1.54937 * 102.92249 * 338.04460 * 5 4 2 21 21 N 1.47900 * 109.91436 * 121.30989 * 2 1 3 22 22 C 1.46908 * 110.99815 * 265.19326 * 21 2 1 23 23 C 1.50699 * 109.47020 * 312.48040 * 22 21 2 24 24 C 1.38231 * 119.99969 * 269.72698 * 23 22 21 25 25 C 1.38241 * 120.00350 * 179.79255 * 24 23 22 26 26 C 1.38237 * 119.99100 * 0.43395 * 25 24 23 27 27 C 1.38228 * 120.00380 * 359.81576 * 26 25 24 28 28 C 1.38228 * 120.00301 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47522 * 179.64759 * 1 2 3 30 30 H 1.08997 * 109.47435 * 299.64971 * 1 2 3 31 31 H 1.09000 * 109.46800 * 59.65014 * 1 2 3 32 32 H 1.09004 * 110.30355 * 120.50807 * 4 2 1 33 33 H 1.09003 * 110.30666 * 358.34347 * 4 2 1 34 34 H 1.00907 * 111.00264 * 323.99671 * 7 5 4 35 35 H 1.09003 * 109.46967 * 299.99359 * 8 7 5 36 36 H 1.08996 * 109.47349 * 59.99591 * 8 7 5 37 37 H 1.08994 * 109.47247 * 59.99944 * 10 9 8 38 38 H 1.09005 * 109.46827 * 180.02562 * 10 9 8 39 39 H 1.09002 * 109.47221 * 299.99507 * 10 9 8 40 40 H 1.08994 * 109.47400 * 60.00586 * 11 9 8 41 41 H 1.09005 * 109.46806 * 179.97438 * 11 9 8 42 42 H 1.09001 * 109.47668 * 299.99913 * 11 9 8 43 43 H 0.96995 * 120.00078 * 180.02562 * 15 14 12 44 44 H 1.09001 * 110.66941 * 155.85558 * 20 5 4 45 45 H 1.09004 * 110.66919 * 278.98125 * 20 5 4 46 46 H 1.08997 * 109.46549 * 72.48009 * 22 21 2 47 47 H 1.08995 * 109.47028 * 192.47825 * 22 21 2 48 48 H 1.07998 * 120.00142 * 359.97438 * 24 23 22 49 49 H 1.07990 * 120.00345 * 180.27358 * 25 24 23 50 50 H 1.08003 * 119.99304 * 179.83768 * 26 25 24 51 51 H 1.08009 * 119.99873 * 179.97438 * 27 26 25 52 52 H 1.08000 * 120.00535 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0248 0.0000 4 6 2.0546 -0.7480 -1.2397 5 6 2.9058 -1.9106 -0.6796 6 1 2.3213 -2.8295 -0.6340 7 7 4.1180 -2.1074 -1.4855 8 6 4.6742 -3.4515 -1.2803 9 6 5.9325 -3.6187 -2.1347 10 6 5.5747 -3.4347 -3.6109 11 6 6.9691 -2.5700 -1.7266 12 6 6.5034 -4.9973 -1.9236 13 1 6.0172 -5.6855 -1.2481 14 6 7.6458 -5.3803 -2.5938 15 7 8.2376 -4.5424 -3.4169 16 14 8.3539 -7.0890 -2.3317 17 1 7.3479 -8.1076 -2.7263 18 1 9.5750 -7.2513 -3.1610 19 1 8.7020 -7.2662 -0.8991 20 6 3.2680 -1.4199 0.7447 21 7 2.0338 -0.7226 1.1880 22 6 2.3211 0.2082 2.2877 23 6 3.1231 1.3717 1.7643 24 6 4.5043 1.3156 1.7658 25 6 5.2399 2.3812 1.2817 26 6 4.5943 3.5065 0.8044 27 6 3.2133 3.5647 0.8077 28 6 2.4776 2.4974 1.2877 29 1 -0.3634 -1.0276 -0.0063 30 1 -0.3634 0.5084 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 2.6714 -0.0863 -1.8479 33 1 1.2227 -1.1369 -1.8270 34 1 3.9340 -1.9377 -2.4630 35 1 4.9288 -3.5827 -0.2286 36 1 3.9359 -4.1986 -1.5714 37 1 5.1621 -2.4374 -3.7631 38 1 6.4711 -3.5543 -4.2195 39 1 4.8362 -4.1818 -3.9016 40 1 7.2240 -2.7011 -0.6750 41 1 7.8657 -2.6894 -2.3349 42 1 6.5564 -1.5727 -1.8789 43 1 9.0411 -4.8120 -3.8886 44 1 3.4888 -2.2642 1.3979 45 1 4.1097 -0.7281 0.7108 46 1 1.3844 0.5728 2.7091 47 1 2.8910 -0.3075 3.0606 48 1 5.0087 0.4381 2.1425 49 1 6.3189 2.3356 1.2788 50 1 5.1691 4.3401 0.4286 51 1 2.7089 4.4442 0.4351 52 1 1.3986 2.5430 1.2907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459730200.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:46 Heat of formation + Delta-G solvation = 30.257492 kcal Electronic energy + Delta-G solvation = -27619.542236 eV Core-core repulsion = 24197.486336 eV Total energy + Delta-G solvation = -3422.055900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.35584 -38.39105 -36.59577 -34.13157 -32.64662 -31.39187 -30.84222 -30.39569 -28.50239 -26.07118 -25.51503 -25.18560 -24.70232 -23.48815 -22.70378 -21.59328 -20.26143 -19.69755 -18.40419 -16.81377 -16.33632 -15.72494 -15.54538 -15.28097 -15.02609 -14.91351 -14.40889 -14.15991 -13.73331 -13.59531 -13.35825 -13.11807 -12.85160 -12.61593 -12.45996 -12.33681 -12.07396 -11.98748 -11.68365 -11.39123 -11.23014 -11.13465 -11.08927 -10.95960 -10.86043 -10.73118 -10.69677 -10.55775 -10.35286 -10.13878 -10.02850 -9.36484 -9.03547 -8.94874 -8.79323 -8.60740 -8.37178 -8.27102 -7.69207 -5.89347 -3.99686 1.23647 1.30958 3.33797 3.38484 3.41311 3.66262 4.03076 4.45673 4.62993 4.68197 4.77026 4.84815 4.91626 4.95869 5.03287 5.14464 5.23843 5.35983 5.39721 5.47016 5.54011 5.58397 5.64622 5.65135 5.79380 5.91121 5.93064 5.95509 5.97664 6.05072 6.17277 6.23597 6.29688 6.35959 6.37718 6.43517 6.46710 6.52585 6.74504 6.89391 6.90923 6.96469 7.06715 7.10675 7.19095 7.40179 7.50070 7.77016 7.78639 7.86253 8.00591 8.23263 8.36577 8.58107 9.01640 9.65187 11.11058 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017094 B = 0.003243 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.648422 B = 8632.645567 C = 9330.380139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.048 3.952 3 H 0.073 0.927 4 C -0.127 4.127 5 C 0.084 3.916 6 H 0.049 0.951 7 N -0.678 5.678 8 C 0.077 3.923 9 C 0.069 3.931 10 C -0.132 4.132 11 C -0.117 4.117 12 C -0.507 4.507 13 H 0.051 0.949 14 C 0.066 3.934 15 N -0.885 5.885 16 Si 0.888 3.112 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.040 3.960 21 N -0.503 5.503 22 C 0.083 3.917 23 C -0.118 4.118 24 C -0.102 4.102 25 C -0.116 4.116 26 C -0.120 4.120 27 C -0.125 4.125 28 C -0.110 4.110 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.338 0.662 35 H 0.055 0.945 36 H 0.012 0.988 37 H 0.010 0.990 38 H 0.083 0.917 39 H 0.018 0.982 40 H 0.016 0.984 41 H 0.073 0.927 42 H 0.019 0.981 43 H 0.258 0.742 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.119 0.881 51 H 0.119 0.881 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.495 15.027 8.408 21.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.061 4.061 3 H 0.091 0.909 4 C -0.166 4.166 5 C -0.027 4.027 6 H 0.067 0.933 7 N -0.310 5.310 8 C -0.052 4.052 9 C 0.069 3.931 10 C -0.189 4.189 11 C -0.175 4.175 12 C -0.545 4.545 13 H 0.069 0.931 14 C -0.135 4.135 15 N -0.524 5.524 16 Si 0.716 3.284 17 H -0.205 1.205 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.088 4.088 21 N -0.226 5.226 22 C -0.045 4.045 23 C -0.120 4.120 24 C -0.121 4.121 25 C -0.134 4.134 26 C -0.138 4.138 27 C -0.143 4.143 28 C -0.129 4.129 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.158 0.842 35 H 0.073 0.927 36 H 0.031 0.969 37 H 0.029 0.971 38 H 0.101 0.899 39 H 0.037 0.963 40 H 0.036 0.964 41 H 0.092 0.908 42 H 0.038 0.962 43 H 0.068 0.932 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.099 0.901 47 H 0.100 0.900 48 H 0.141 0.859 49 H 0.140 0.860 50 H 0.137 0.863 51 H 0.137 0.863 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.327 14.922 8.946 21.323 hybrid contribution 0.436 -0.970 -0.667 1.255 sum -11.891 13.952 8.280 20.115 Atomic orbital electron populations 1.21741 0.94503 1.02102 1.00747 1.22633 0.95669 0.98038 0.89743 0.90928 1.22615 0.99248 0.97556 0.97133 1.22315 0.90551 0.96377 0.93486 0.93347 1.60631 1.27213 1.30991 1.12215 1.22173 0.97092 0.85562 1.00323 1.18084 0.89663 0.94677 0.90724 1.21826 1.01227 0.95349 1.00535 1.21617 1.01293 0.95799 0.98750 1.21079 1.09690 0.98343 1.25427 0.93092 1.24878 0.96693 0.96812 0.95137 1.69825 1.19748 1.34586 1.28224 0.86734 0.78423 0.85142 0.78091 1.20478 1.21382 1.20409 1.23331 0.91539 0.98259 0.95663 1.65078 1.26722 1.24129 1.06633 1.21353 0.98622 0.89776 0.94720 1.20572 0.94562 0.96451 1.00402 1.21140 0.93394 0.98349 0.99206 1.21198 1.00130 0.93634 0.98401 1.21150 0.94640 0.98254 0.99782 1.21107 0.94253 0.98532 1.00431 1.20996 0.99551 0.93144 0.99173 0.92152 0.93095 0.92784 0.90859 0.91466 0.84168 0.92651 0.96929 0.97111 0.89866 0.96272 0.96430 0.90840 0.96206 0.93177 0.90638 0.91567 0.90064 0.89984 0.85944 0.85965 0.86275 0.86311 0.86296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 9.32 37.16 0.35 -0.98 16 2 C 0.05 0.56 2.79 -66.64 -0.19 0.37 16 3 H 0.07 0.86 4.03 -51.93 -0.21 0.66 16 4 C -0.13 -1.66 6.08 -25.37 -0.15 -1.82 16 5 C 0.08 1.28 3.35 -65.86 -0.22 1.06 16 6 H 0.05 0.79 7.89 -51.93 -0.41 0.38 16 7 N -0.68 -12.09 5.53 -104.77 -0.58 -12.67 16 8 C 0.08 1.61 4.44 -3.82 -0.02 1.59 16 9 C 0.07 1.67 0.57 -155.66 -0.09 1.58 16 10 C -0.13 -3.12 7.92 37.16 0.29 -2.82 16 11 C -0.12 -2.85 8.09 37.16 0.30 -2.55 16 12 C -0.51 -13.69 8.01 -34.44 -0.28 -13.96 16 13 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 14 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 15 N -0.88 -24.55 9.35 55.43 0.52 -24.03 16 16 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.04 0.58 6.01 -1.90 -0.01 0.57 16 21 N -0.50 -6.23 5.17 -224.00 -1.16 -7.39 16 22 C 0.08 0.89 5.72 -4.97 -0.03 0.86 16 23 C -0.12 -1.31 4.05 -104.63 -0.42 -1.74 16 24 C -0.10 -1.21 8.04 -39.58 -0.32 -1.53 16 25 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 26 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16 27 C -0.13 -1.23 10.05 -39.59 -0.40 -1.63 16 28 C -0.11 -1.12 7.35 -39.59 -0.29 -1.41 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 1.00 8.01 -51.93 -0.42 0.59 16 33 H 0.07 0.82 7.69 -51.93 -0.40 0.42 16 34 H 0.34 6.03 6.51 -39.29 -0.26 5.77 16 35 H 0.05 1.19 8.13 -51.93 -0.42 0.77 16 36 H 0.01 0.27 8.08 -51.93 -0.42 -0.15 16 37 H 0.01 0.22 6.57 -51.93 -0.34 -0.13 16 38 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 1.97 6.07 -51.93 -0.32 1.65 16 42 H 0.02 0.44 7.60 -51.93 -0.39 0.04 16 43 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.07 1.02 5.32 -51.93 -0.28 0.74 16 46 H 0.08 0.77 8.09 -51.93 -0.42 0.35 16 47 H 0.08 0.85 8.03 -51.93 -0.42 0.43 16 48 H 0.12 1.43 7.56 -52.49 -0.40 1.04 16 49 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 50 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 51 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 52 H 0.12 1.04 7.94 -52.49 -0.42 0.62 16 LS Contribution 390.60 15.07 5.89 5.89 Total: -1.00 -27.56 390.60 -11.88 -39.44 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -9.17 Total: 6.62 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: -2.36 Total: -24.05 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -1.22 Total: -44.08 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -27.56 -11.88 -39.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459730200.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.701 kcal (2) G-P(sol) polarization free energy of solvation -27.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds