Wall clock time and date at job start Tue Mar 31 2020 11:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.91087 * 2 1 4 4 C 1.54002 * 109.91606 * 238.89336 * 2 1 3 5 5 C 1.54591 * 105.14001 * 239.42560 * 4 2 1 6 6 H 1.08996 * 110.72692 * 96.40569 * 5 4 2 7 7 N 1.46896 * 110.87618 * 219.61656 * 5 4 2 8 8 C 1.46901 * 111.00182 * 200.04507 * 7 5 4 9 9 C 1.53006 * 109.47339 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.46821 * 300.00107 * 9 8 7 11 11 C 1.52998 * 109.46886 * 59.99787 * 9 8 7 12 12 C 1.50695 * 109.46978 * 179.97438 * 9 8 7 13 13 H 1.07998 * 120.00147 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99692 * 179.97438 * 12 9 8 15 15 N 1.31520 * 120.00352 * 0.02562 * 14 12 9 16 16 Si 1.86807 * 120.00001 * 179.97438 * 14 12 9 17 17 H 1.48503 * 109.46919 * 60.00027 * 16 14 12 18 18 H 1.48499 * 109.47136 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47273 * 300.00147 * 16 14 12 20 20 C 1.54937 * 102.92249 * 338.04460 * 5 4 2 21 21 N 1.47900 * 109.91436 * 121.30989 * 2 1 3 22 22 C 1.46908 * 110.99815 * 265.19326 * 21 2 1 23 23 C 1.50699 * 109.47020 * 312.48040 * 22 21 2 24 24 C 1.38231 * 119.99969 * 269.72698 * 23 22 21 25 25 C 1.38241 * 120.00350 * 179.79255 * 24 23 22 26 26 C 1.38237 * 119.99100 * 0.43395 * 25 24 23 27 27 C 1.38228 * 120.00380 * 359.81576 * 26 25 24 28 28 C 1.38228 * 120.00301 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47522 * 179.64759 * 1 2 3 30 30 H 1.08997 * 109.47435 * 299.64971 * 1 2 3 31 31 H 1.09000 * 109.46800 * 59.65014 * 1 2 3 32 32 H 1.09004 * 110.30355 * 120.50807 * 4 2 1 33 33 H 1.09003 * 110.30666 * 358.34347 * 4 2 1 34 34 H 1.00907 * 111.00264 * 323.99671 * 7 5 4 35 35 H 1.09003 * 109.46967 * 299.99359 * 8 7 5 36 36 H 1.08996 * 109.47349 * 59.99591 * 8 7 5 37 37 H 1.08994 * 109.47247 * 59.99944 * 10 9 8 38 38 H 1.09005 * 109.46827 * 180.02562 * 10 9 8 39 39 H 1.09002 * 109.47221 * 299.99507 * 10 9 8 40 40 H 1.08994 * 109.47400 * 60.00586 * 11 9 8 41 41 H 1.09005 * 109.46806 * 179.97438 * 11 9 8 42 42 H 1.09001 * 109.47668 * 299.99913 * 11 9 8 43 43 H 0.96995 * 120.00078 * 180.02562 * 15 14 12 44 44 H 1.09001 * 110.66941 * 155.85558 * 20 5 4 45 45 H 1.09004 * 110.66919 * 278.98125 * 20 5 4 46 46 H 1.08997 * 109.46549 * 72.48009 * 22 21 2 47 47 H 1.08995 * 109.47028 * 192.47825 * 22 21 2 48 48 H 1.07998 * 120.00142 * 359.97438 * 24 23 22 49 49 H 1.07990 * 120.00345 * 180.27358 * 25 24 23 50 50 H 1.08003 * 119.99304 * 179.83768 * 26 25 24 51 51 H 1.08009 * 119.99873 * 179.97438 * 27 26 25 52 52 H 1.08000 * 120.00535 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9012 1.0248 0.0000 4 6 2.0546 -0.7480 -1.2397 5 6 2.9058 -1.9106 -0.6796 6 1 2.3213 -2.8295 -0.6340 7 7 4.1180 -2.1074 -1.4855 8 6 4.6742 -3.4515 -1.2803 9 6 5.9325 -3.6187 -2.1347 10 6 5.5747 -3.4347 -3.6109 11 6 6.9691 -2.5700 -1.7266 12 6 6.5034 -4.9973 -1.9236 13 1 6.0172 -5.6855 -1.2481 14 6 7.6458 -5.3803 -2.5938 15 7 8.2376 -4.5424 -3.4169 16 14 8.3539 -7.0890 -2.3317 17 1 7.3479 -8.1076 -2.7263 18 1 9.5750 -7.2513 -3.1610 19 1 8.7020 -7.2662 -0.8991 20 6 3.2680 -1.4199 0.7447 21 7 2.0338 -0.7226 1.1880 22 6 2.3211 0.2082 2.2877 23 6 3.1231 1.3717 1.7643 24 6 4.5043 1.3156 1.7658 25 6 5.2399 2.3812 1.2817 26 6 4.5943 3.5065 0.8044 27 6 3.2133 3.5647 0.8077 28 6 2.4776 2.4974 1.2877 29 1 -0.3634 -1.0276 -0.0063 30 1 -0.3634 0.5084 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 2.6714 -0.0863 -1.8479 33 1 1.2227 -1.1369 -1.8270 34 1 3.9340 -1.9377 -2.4630 35 1 4.9288 -3.5827 -0.2286 36 1 3.9359 -4.1986 -1.5714 37 1 5.1621 -2.4374 -3.7631 38 1 6.4711 -3.5543 -4.2195 39 1 4.8362 -4.1818 -3.9016 40 1 7.2240 -2.7011 -0.6750 41 1 7.8657 -2.6894 -2.3349 42 1 6.5564 -1.5727 -1.8789 43 1 9.0411 -4.8120 -3.8886 44 1 3.4888 -2.2642 1.3979 45 1 4.1097 -0.7281 0.7108 46 1 1.3844 0.5728 2.7091 47 1 2.8910 -0.3075 3.0606 48 1 5.0087 0.4381 2.1425 49 1 6.3189 2.3356 1.2788 50 1 5.1691 4.3401 0.4286 51 1 2.7089 4.4442 0.4351 52 1 1.3986 2.5430 1.2907 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459730200.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:45 Heat of formation + Delta-G solvation = 16.222009 kcal Electronic energy + Delta-G solvation = -27620.150860 eV Core-core repulsion = 24197.486336 eV Total energy + Delta-G solvation = -3422.664524 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.28141 -39.42386 -38.23646 -35.59089 -33.82674 -32.82509 -31.92332 -31.33390 -29.75320 -27.54033 -27.26893 -26.96847 -25.85888 -24.94419 -23.53883 -22.46131 -21.45271 -20.67985 -20.26783 -17.94927 -17.61641 -17.23081 -16.80597 -16.48224 -16.14470 -16.00568 -15.84643 -15.24752 -15.15826 -14.76351 -14.47319 -14.32777 -14.09974 -13.90277 -13.84973 -13.36160 -13.32289 -13.17576 -13.02810 -12.92856 -12.72696 -12.57718 -12.45525 -12.26278 -12.13007 -12.10815 -12.03442 -11.89428 -11.82720 -11.67660 -11.55508 -11.29724 -10.88353 -10.60088 -10.34156 -9.77182 -9.61407 -9.35397 -9.19316 -7.96637 -6.13551 0.42789 0.49955 1.43013 1.43726 1.50589 2.46164 2.81689 3.03189 3.25277 3.53481 3.71783 3.73314 3.90698 3.97456 4.14679 4.16913 4.28224 4.35852 4.39999 4.52739 4.58990 4.61778 4.65035 4.67303 4.75588 4.79983 4.86494 4.88232 4.94512 4.97838 5.03549 5.04401 5.11398 5.12983 5.15909 5.17417 5.22019 5.28845 5.42665 5.46089 5.53049 5.57157 5.63025 5.65455 5.69685 5.76627 5.93295 6.11309 6.12512 6.18923 6.28689 6.34864 6.49889 6.64376 6.95495 7.53889 9.01253 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017094 B = 0.003243 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.648422 B = 8632.645567 C = 9330.380139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.049 3.951 3 H 0.076 0.924 4 C -0.122 4.122 5 C 0.081 3.919 6 H 0.040 0.960 7 N -0.676 5.676 8 C 0.094 3.906 9 C 0.060 3.940 10 C -0.120 4.120 11 C -0.101 4.101 12 C -0.528 4.528 13 H 0.043 0.957 14 C 0.024 3.976 15 N -0.902 5.902 16 Si 0.943 3.057 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.276 1.276 20 C 0.045 3.955 21 N -0.504 5.504 22 C 0.084 3.916 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.133 4.133 26 C -0.127 4.127 27 C -0.127 4.127 28 C -0.112 4.112 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.340 0.660 35 H 0.045 0.955 36 H 0.006 0.994 37 H 0.033 0.967 38 H 0.056 0.944 39 H 0.016 0.984 40 H 0.008 0.992 41 H 0.048 0.952 42 H 0.032 0.968 43 H 0.257 0.743 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.099 0.901 47 H 0.079 0.921 48 H 0.112 0.888 49 H 0.125 0.875 50 H 0.137 0.863 51 H 0.144 0.856 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.261 16.328 8.586 23.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.059 4.059 3 H 0.093 0.907 4 C -0.160 4.160 5 C -0.029 4.029 6 H 0.058 0.942 7 N -0.308 5.308 8 C -0.035 4.035 9 C 0.060 3.940 10 C -0.177 4.177 11 C -0.159 4.159 12 C -0.567 4.567 13 H 0.061 0.939 14 C -0.175 4.175 15 N -0.541 5.541 16 Si 0.770 3.230 17 H -0.201 1.201 18 H -0.210 1.210 19 H -0.202 1.202 20 C -0.083 4.083 21 N -0.226 5.226 22 C -0.044 4.044 23 C -0.126 4.126 24 C -0.140 4.140 25 C -0.151 4.151 26 C -0.145 4.145 27 C -0.145 4.145 28 C -0.130 4.130 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.160 0.840 35 H 0.064 0.936 36 H 0.024 0.976 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.035 0.965 40 H 0.027 0.973 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.067 0.933 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.118 0.882 47 H 0.098 0.902 48 H 0.130 0.870 49 H 0.143 0.857 50 H 0.155 0.845 51 H 0.162 0.838 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.104 16.232 9.132 23.362 hybrid contribution 0.983 -1.321 -0.703 1.790 sum -13.121 14.911 8.429 21.577 Atomic orbital electron populations 1.21709 0.92753 1.02032 1.02087 1.22680 0.96937 0.97688 0.88577 0.90674 1.22596 0.99053 0.96506 0.97862 1.22356 0.89708 0.97061 0.93805 0.94192 1.60557 1.28867 1.28782 1.12631 1.21808 0.95687 0.87101 0.98883 1.18134 0.90861 0.93372 0.91642 1.21650 0.99901 0.96606 0.99591 1.21425 1.00348 0.96608 0.97497 1.21401 1.10183 0.99654 1.25443 0.93877 1.25515 0.97065 0.99918 0.95023 1.69956 1.19813 1.35811 1.28567 0.85856 0.77778 0.81442 0.77955 1.20110 1.21011 1.20190 1.23170 0.92290 0.97885 0.94953 1.65106 1.25310 1.24930 1.07269 1.21404 0.99474 0.89425 0.94052 1.20617 0.94196 0.97037 1.00777 1.21202 0.94149 0.98442 1.00215 1.21377 1.00549 0.94161 0.99030 1.21436 0.95339 0.98334 0.99366 1.21449 0.94128 0.99248 0.99657 1.21242 1.00577 0.92708 0.98514 0.92922 0.91891 0.91347 0.91367 0.90294 0.84013 0.93634 0.97604 0.94803 0.92545 0.96523 0.97306 0.93356 0.94922 0.93314 0.91814 0.92669 0.88232 0.90219 0.86963 0.85704 0.84488 0.83838 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 9.32 71.98 0.67 -1.49 16 2 C 0.05 1.04 2.79 45.06 0.13 1.17 16 3 H 0.08 1.59 4.03 -2.39 -0.01 1.58 16 4 C -0.12 -2.97 6.08 31.47 0.19 -2.78 16 5 C 0.08 2.44 3.35 46.12 0.15 2.59 16 6 H 0.04 1.28 7.89 -2.39 -0.02 1.26 16 7 N -0.68 -23.80 5.53 -485.38 -2.68 -26.48 16 8 C 0.09 3.97 4.44 86.31 0.38 4.35 16 9 C 0.06 2.95 0.57 -52.93 -0.03 2.92 16 10 C -0.12 -5.66 7.92 71.98 0.57 -5.09 16 11 C -0.10 -4.97 8.09 71.98 0.58 -4.39 16 12 C -0.53 -28.86 8.01 25.60 0.21 -28.66 16 13 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 14 C 0.02 1.31 5.15 84.65 0.44 1.74 16 15 N -0.90 -50.64 9.35 21.45 0.20 -50.44 16 16 Si 0.94 43.69 29.54 68.60 2.03 45.71 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 20 C 0.05 1.30 6.01 86.65 0.52 1.83 16 21 N -0.50 -11.77 5.17 -862.60 -4.46 -16.23 16 22 C 0.08 1.68 5.72 85.56 0.49 2.17 16 23 C -0.12 -2.61 4.05 -19.87 -0.08 -2.69 16 24 C -0.12 -2.87 8.04 22.27 0.18 -2.69 16 25 C -0.13 -2.97 10.05 22.27 0.22 -2.74 16 26 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 27 C -0.13 -2.17 10.05 22.26 0.22 -1.95 16 28 C -0.11 -2.00 7.35 22.27 0.16 -1.83 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 1.74 8.01 -2.38 -0.02 1.72 16 33 H 0.08 1.74 7.69 -2.39 -0.02 1.72 16 34 H 0.34 11.75 6.51 -89.69 -0.58 11.16 16 35 H 0.05 1.99 8.13 -2.39 -0.02 1.97 16 36 H 0.01 0.25 8.08 -2.39 -0.02 0.23 16 37 H 0.03 1.40 6.57 -2.39 -0.02 1.38 16 38 H 0.06 2.98 6.07 -2.38 -0.01 2.97 16 39 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.05 2.62 6.07 -2.38 -0.01 2.60 16 42 H 0.03 1.47 7.60 -2.39 -0.02 1.45 16 43 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 44 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.06 1.72 5.32 -2.39 -0.01 1.70 16 46 H 0.10 1.63 8.09 -2.39 -0.02 1.61 16 47 H 0.08 1.61 8.03 -2.39 -0.02 1.59 16 48 H 0.11 2.77 7.56 -2.91 -0.02 2.74 16 49 H 0.12 2.56 8.06 -2.92 -0.02 2.54 16 50 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 51 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 52 H 0.14 1.90 7.94 -2.91 -0.02 1.88 16 Total: -1.00 -58.63 390.60 0.61 -58.02 By element: Atomic # 1 Polarization: 28.85 SS G_CDS: 0.29 Total: 29.14 kcal Atomic # 6 Polarization: -44.96 SS G_CDS: 5.23 Total: -39.72 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -6.94 Total: -93.15 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal Total: -58.63 0.61 -58.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459730200.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.240 kcal (2) G-P(sol) polarization free energy of solvation -58.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds