Wall clock time and date at job start Tue Mar 31 2020 11:27:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08999 * 109.91087 * 2 1
4 4 C 1.54002 * 109.91606 * 238.89336 * 2 1 3
5 5 C 1.54591 * 105.14001 * 239.42560 * 4 2 1
6 6 H 1.08996 * 110.72692 * 96.40569 * 5 4 2
7 7 N 1.46896 * 110.87618 * 219.61656 * 5 4 2
8 8 C 1.46901 * 111.00182 * 200.04507 * 7 5 4
9 9 C 1.53006 * 109.47339 * 179.97438 * 8 7 5
10 10 C 1.53001 * 109.46821 * 300.00107 * 9 8 7
11 11 C 1.52998 * 109.46886 * 59.99787 * 9 8 7
12 12 C 1.50695 * 109.46978 * 179.97438 * 9 8 7
13 13 H 1.07998 * 120.00147 * 0.02562 * 12 9 8
14 14 C 1.37875 * 119.99692 * 179.97438 * 12 9 8
15 15 N 1.31520 * 120.00352 * 0.02562 * 14 12 9
16 16 Si 1.86807 * 120.00001 * 179.97438 * 14 12 9
17 17 H 1.48503 * 109.46919 * 60.00027 * 16 14 12
18 18 H 1.48499 * 109.47136 * 180.02562 * 16 14 12
19 19 H 1.48492 * 109.47273 * 300.00147 * 16 14 12
20 20 C 1.54937 * 102.92249 * 338.04460 * 5 4 2
21 21 N 1.47900 * 109.91436 * 121.30989 * 2 1 3
22 22 C 1.46908 * 110.99815 * 265.19326 * 21 2 1
23 23 C 1.50699 * 109.47020 * 312.48040 * 22 21 2
24 24 C 1.38231 * 119.99969 * 269.72698 * 23 22 21
25 25 C 1.38241 * 120.00350 * 179.79255 * 24 23 22
26 26 C 1.38237 * 119.99100 * 0.43395 * 25 24 23
27 27 C 1.38228 * 120.00380 * 359.81576 * 26 25 24
28 28 C 1.38228 * 120.00301 * 359.97438 * 27 26 25
29 29 H 1.09000 * 109.47522 * 179.64759 * 1 2 3
30 30 H 1.08997 * 109.47435 * 299.64971 * 1 2 3
31 31 H 1.09000 * 109.46800 * 59.65014 * 1 2 3
32 32 H 1.09004 * 110.30355 * 120.50807 * 4 2 1
33 33 H 1.09003 * 110.30666 * 358.34347 * 4 2 1
34 34 H 1.00907 * 111.00264 * 323.99671 * 7 5 4
35 35 H 1.09003 * 109.46967 * 299.99359 * 8 7 5
36 36 H 1.08996 * 109.47349 * 59.99591 * 8 7 5
37 37 H 1.08994 * 109.47247 * 59.99944 * 10 9 8
38 38 H 1.09005 * 109.46827 * 180.02562 * 10 9 8
39 39 H 1.09002 * 109.47221 * 299.99507 * 10 9 8
40 40 H 1.08994 * 109.47400 * 60.00586 * 11 9 8
41 41 H 1.09005 * 109.46806 * 179.97438 * 11 9 8
42 42 H 1.09001 * 109.47668 * 299.99913 * 11 9 8
43 43 H 0.96995 * 120.00078 * 180.02562 * 15 14 12
44 44 H 1.09001 * 110.66941 * 155.85558 * 20 5 4
45 45 H 1.09004 * 110.66919 * 278.98125 * 20 5 4
46 46 H 1.08997 * 109.46549 * 72.48009 * 22 21 2
47 47 H 1.08995 * 109.47028 * 192.47825 * 22 21 2
48 48 H 1.07998 * 120.00142 * 359.97438 * 24 23 22
49 49 H 1.07990 * 120.00345 * 180.27358 * 25 24 23
50 50 H 1.08003 * 119.99304 * 179.83768 * 26 25 24
51 51 H 1.08009 * 119.99873 * 179.97438 * 27 26 25
52 52 H 1.08000 * 120.00535 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9012 1.0248 0.0000
4 6 2.0546 -0.7480 -1.2397
5 6 2.9058 -1.9106 -0.6796
6 1 2.3213 -2.8295 -0.6340
7 7 4.1180 -2.1074 -1.4855
8 6 4.6742 -3.4515 -1.2803
9 6 5.9325 -3.6187 -2.1347
10 6 5.5747 -3.4347 -3.6109
11 6 6.9691 -2.5700 -1.7266
12 6 6.5034 -4.9973 -1.9236
13 1 6.0172 -5.6855 -1.2481
14 6 7.6458 -5.3803 -2.5938
15 7 8.2376 -4.5424 -3.4169
16 14 8.3539 -7.0890 -2.3317
17 1 7.3479 -8.1076 -2.7263
18 1 9.5750 -7.2513 -3.1610
19 1 8.7020 -7.2662 -0.8991
20 6 3.2680 -1.4199 0.7447
21 7 2.0338 -0.7226 1.1880
22 6 2.3211 0.2082 2.2877
23 6 3.1231 1.3717 1.7643
24 6 4.5043 1.3156 1.7658
25 6 5.2399 2.3812 1.2817
26 6 4.5943 3.5065 0.8044
27 6 3.2133 3.5647 0.8077
28 6 2.4776 2.4974 1.2877
29 1 -0.3634 -1.0276 -0.0063
30 1 -0.3634 0.5084 0.8931
31 1 -0.3633 0.5193 -0.8868
32 1 2.6714 -0.0863 -1.8479
33 1 1.2227 -1.1369 -1.8270
34 1 3.9340 -1.9377 -2.4630
35 1 4.9288 -3.5827 -0.2286
36 1 3.9359 -4.1986 -1.5714
37 1 5.1621 -2.4374 -3.7631
38 1 6.4711 -3.5543 -4.2195
39 1 4.8362 -4.1818 -3.9016
40 1 7.2240 -2.7011 -0.6750
41 1 7.8657 -2.6894 -2.3349
42 1 6.5564 -1.5727 -1.8789
43 1 9.0411 -4.8120 -3.8886
44 1 3.4888 -2.2642 1.3979
45 1 4.1097 -0.7281 0.7108
46 1 1.3844 0.5728 2.7091
47 1 2.8910 -0.3075 3.0606
48 1 5.0087 0.4381 2.1425
49 1 6.3189 2.3356 1.2788
50 1 5.1691 4.3401 0.4286
51 1 2.7089 4.4442 0.4351
52 1 1.3986 2.5430 1.2907
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000459730200.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:27:45
Heat of formation + Delta-G solvation = 16.222009 kcal
Electronic energy + Delta-G solvation = -27620.150860 eV
Core-core repulsion = 24197.486336 eV
Total energy + Delta-G solvation = -3422.664524 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-41.28141 -39.42386 -38.23646 -35.59089 -33.82674 -32.82509 -31.92332 -31.33390
-29.75320 -27.54033 -27.26893 -26.96847 -25.85888 -24.94419 -23.53883 -22.46131
-21.45271 -20.67985 -20.26783 -17.94927 -17.61641 -17.23081 -16.80597 -16.48224
-16.14470 -16.00568 -15.84643 -15.24752 -15.15826 -14.76351 -14.47319 -14.32777
-14.09974 -13.90277 -13.84973 -13.36160 -13.32289 -13.17576 -13.02810 -12.92856
-12.72696 -12.57718 -12.45525 -12.26278 -12.13007 -12.10815 -12.03442 -11.89428
-11.82720 -11.67660 -11.55508 -11.29724 -10.88353 -10.60088 -10.34156 -9.77182
-9.61407 -9.35397 -9.19316 -7.96637 -6.13551 0.42789 0.49955 1.43013
1.43726 1.50589 2.46164 2.81689 3.03189 3.25277 3.53481 3.71783
3.73314 3.90698 3.97456 4.14679 4.16913 4.28224 4.35852 4.39999
4.52739 4.58990 4.61778 4.65035 4.67303 4.75588 4.79983 4.86494
4.88232 4.94512 4.97838 5.03549 5.04401 5.11398 5.12983 5.15909
5.17417 5.22019 5.28845 5.42665 5.46089 5.53049 5.57157 5.63025
5.65455 5.69685 5.76627 5.93295 6.11309 6.12512 6.18923 6.28689
6.34864 6.49889 6.64376 6.95495 7.53889 9.01253
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.017094 B = 0.003243 C = 0.003000
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1637.648422 B = 8632.645567 C = 9330.380139
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 C 0.049 3.951
3 H 0.076 0.924
4 C -0.122 4.122
5 C 0.081 3.919
6 H 0.040 0.960
7 N -0.676 5.676
8 C 0.094 3.906
9 C 0.060 3.940
10 C -0.120 4.120
11 C -0.101 4.101
12 C -0.528 4.528
13 H 0.043 0.957
14 C 0.024 3.976
15 N -0.902 5.902
16 Si 0.943 3.057
17 H -0.276 1.276
18 H -0.285 1.285
19 H -0.276 1.276
20 C 0.045 3.955
21 N -0.504 5.504
22 C 0.084 3.916
23 C -0.125 4.125
24 C -0.121 4.121
25 C -0.133 4.133
26 C -0.127 4.127
27 C -0.127 4.127
28 C -0.112 4.112
29 H 0.052 0.948
30 H 0.062 0.938
31 H 0.068 0.932
32 H 0.068 0.932
33 H 0.078 0.922
34 H 0.340 0.660
35 H 0.045 0.955
36 H 0.006 0.994
37 H 0.033 0.967
38 H 0.056 0.944
39 H 0.016 0.984
40 H 0.008 0.992
41 H 0.048 0.952
42 H 0.032 0.968
43 H 0.257 0.743
44 H 0.063 0.937
45 H 0.055 0.945
46 H 0.099 0.901
47 H 0.079 0.921
48 H 0.112 0.888
49 H 0.125 0.875
50 H 0.137 0.863
51 H 0.144 0.856
52 H 0.138 0.862
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.261 16.328 8.586 23.317
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.186 4.186
2 C -0.059 4.059
3 H 0.093 0.907
4 C -0.160 4.160
5 C -0.029 4.029
6 H 0.058 0.942
7 N -0.308 5.308
8 C -0.035 4.035
9 C 0.060 3.940
10 C -0.177 4.177
11 C -0.159 4.159
12 C -0.567 4.567
13 H 0.061 0.939
14 C -0.175 4.175
15 N -0.541 5.541
16 Si 0.770 3.230
17 H -0.201 1.201
18 H -0.210 1.210
19 H -0.202 1.202
20 C -0.083 4.083
21 N -0.226 5.226
22 C -0.044 4.044
23 C -0.126 4.126
24 C -0.140 4.140
25 C -0.151 4.151
26 C -0.145 4.145
27 C -0.145 4.145
28 C -0.130 4.130
29 H 0.071 0.929
30 H 0.081 0.919
31 H 0.087 0.913
32 H 0.086 0.914
33 H 0.097 0.903
34 H 0.160 0.840
35 H 0.064 0.936
36 H 0.024 0.976
37 H 0.052 0.948
38 H 0.075 0.925
39 H 0.035 0.965
40 H 0.027 0.973
41 H 0.066 0.934
42 H 0.051 0.949
43 H 0.067 0.933
44 H 0.082 0.918
45 H 0.073 0.927
46 H 0.118 0.882
47 H 0.098 0.902
48 H 0.130 0.870
49 H 0.143 0.857
50 H 0.155 0.845
51 H 0.162 0.838
52 H 0.156 0.844
Dipole moment (debyes) X Y Z Total
from point charges -14.104 16.232 9.132 23.362
hybrid contribution 0.983 -1.321 -0.703 1.790
sum -13.121 14.911 8.429 21.577
Atomic orbital electron populations
1.21709 0.92753 1.02032 1.02087 1.22680 0.96937 0.97688 0.88577
0.90674 1.22596 0.99053 0.96506 0.97862 1.22356 0.89708 0.97061
0.93805 0.94192 1.60557 1.28867 1.28782 1.12631 1.21808 0.95687
0.87101 0.98883 1.18134 0.90861 0.93372 0.91642 1.21650 0.99901
0.96606 0.99591 1.21425 1.00348 0.96608 0.97497 1.21401 1.10183
0.99654 1.25443 0.93877 1.25515 0.97065 0.99918 0.95023 1.69956
1.19813 1.35811 1.28567 0.85856 0.77778 0.81442 0.77955 1.20110
1.21011 1.20190 1.23170 0.92290 0.97885 0.94953 1.65106 1.25310
1.24930 1.07269 1.21404 0.99474 0.89425 0.94052 1.20617 0.94196
0.97037 1.00777 1.21202 0.94149 0.98442 1.00215 1.21377 1.00549
0.94161 0.99030 1.21436 0.95339 0.98334 0.99366 1.21449 0.94128
0.99248 0.99657 1.21242 1.00577 0.92708 0.98514 0.92922 0.91891
0.91347 0.91367 0.90294 0.84013 0.93634 0.97604 0.94803 0.92545
0.96523 0.97306 0.93356 0.94922 0.93314 0.91814 0.92669 0.88232
0.90219 0.86963 0.85704 0.84488 0.83838 0.84412
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.16 9.32 71.98 0.67 -1.49 16
2 C 0.05 1.04 2.79 45.06 0.13 1.17 16
3 H 0.08 1.59 4.03 -2.39 -0.01 1.58 16
4 C -0.12 -2.97 6.08 31.47 0.19 -2.78 16
5 C 0.08 2.44 3.35 46.12 0.15 2.59 16
6 H 0.04 1.28 7.89 -2.39 -0.02 1.26 16
7 N -0.68 -23.80 5.53 -485.38 -2.68 -26.48 16
8 C 0.09 3.97 4.44 86.31 0.38 4.35 16
9 C 0.06 2.95 0.57 -52.93 -0.03 2.92 16
10 C -0.12 -5.66 7.92 71.98 0.57 -5.09 16
11 C -0.10 -4.97 8.09 71.98 0.58 -4.39 16
12 C -0.53 -28.86 8.01 25.60 0.21 -28.66 16
13 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16
14 C 0.02 1.31 5.15 84.65 0.44 1.74 16
15 N -0.90 -50.64 9.35 21.45 0.20 -50.44 16
16 Si 0.94 43.69 29.54 68.60 2.03 45.71 16
17 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16
18 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16
19 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16
20 C 0.05 1.30 6.01 86.65 0.52 1.83 16
21 N -0.50 -11.77 5.17 -862.60 -4.46 -16.23 16
22 C 0.08 1.68 5.72 85.56 0.49 2.17 16
23 C -0.12 -2.61 4.05 -19.87 -0.08 -2.69 16
24 C -0.12 -2.87 8.04 22.27 0.18 -2.69 16
25 C -0.13 -2.97 10.05 22.27 0.22 -2.74 16
26 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16
27 C -0.13 -2.17 10.05 22.26 0.22 -1.95 16
28 C -0.11 -2.00 7.35 22.27 0.16 -1.83 16
29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16
30 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16
31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16
32 H 0.07 1.74 8.01 -2.38 -0.02 1.72 16
33 H 0.08 1.74 7.69 -2.39 -0.02 1.72 16
34 H 0.34 11.75 6.51 -89.69 -0.58 11.16 16
35 H 0.05 1.99 8.13 -2.39 -0.02 1.97 16
36 H 0.01 0.25 8.08 -2.39 -0.02 0.23 16
37 H 0.03 1.40 6.57 -2.39 -0.02 1.38 16
38 H 0.06 2.98 6.07 -2.38 -0.01 2.97 16
39 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16
40 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16
41 H 0.05 2.62 6.07 -2.38 -0.01 2.60 16
42 H 0.03 1.47 7.60 -2.39 -0.02 1.45 16
43 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16
44 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16
45 H 0.06 1.72 5.32 -2.39 -0.01 1.70 16
46 H 0.10 1.63 8.09 -2.39 -0.02 1.61 16
47 H 0.08 1.61 8.03 -2.39 -0.02 1.59 16
48 H 0.11 2.77 7.56 -2.91 -0.02 2.74 16
49 H 0.12 2.56 8.06 -2.92 -0.02 2.54 16
50 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16
51 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16
52 H 0.14 1.90 7.94 -2.91 -0.02 1.88 16
Total: -1.00 -58.63 390.60 0.61 -58.02
By element:
Atomic # 1 Polarization: 28.85 SS G_CDS: 0.29 Total: 29.14 kcal
Atomic # 6 Polarization: -44.96 SS G_CDS: 5.23 Total: -39.72 kcal
Atomic # 7 Polarization: -86.21 SS G_CDS: -6.94 Total: -93.15 kcal
Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.71 kcal
Total: -58.63 0.61 -58.02 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000459730200.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 74.240 kcal
(2) G-P(sol) polarization free energy of solvation -58.630 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.610 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.612 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.018 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.222 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds