Wall clock time and date at job start Tue Mar 31 2020 11:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.28558 * 2 1 4 4 C 1.54378 * 110.41004 * 122.18432 * 2 1 3 5 5 N 1.48559 * 104.59169 * 142.79388 * 4 2 1 6 6 C 1.46907 * 111.00351 * 200.96121 * 5 4 2 7 7 C 1.50702 * 109.46818 * 285.42379 * 6 5 4 8 8 C 1.38234 * 120.00257 * 89.99881 * 7 6 5 9 9 C 1.38238 * 119.99675 * 180.25732 * 8 7 6 10 10 C 1.38228 * 120.00114 * 359.50218 * 9 8 7 11 11 C 1.38234 * 120.00051 * 0.47390 * 10 9 8 12 12 C 1.38235 * 119.99522 * 269.96894 * 7 6 5 13 13 C 1.48558 * 104.22345 * 320.51895 * 5 4 2 14 14 C 1.54260 * 110.32439 * 237.87712 * 2 1 3 15 15 H 1.08995 * 110.32656 * 122.10483 * 14 2 1 16 16 N 1.46903 * 110.40833 * 359.93824 * 14 2 1 17 17 C 1.46897 * 110.99729 * 157.85999 * 16 14 2 18 18 C 1.53000 * 109.47129 * 180.02562 * 17 16 14 19 19 C 1.52997 * 109.47012 * 299.99764 * 18 17 16 20 20 C 1.52997 * 109.47159 * 59.99842 * 18 17 16 21 21 C 1.50703 * 109.47055 * 180.02562 * 18 17 16 22 22 H 1.08000 * 119.99954 * 359.97438 * 21 18 17 23 23 C 1.37884 * 119.99819 * 179.97438 * 21 18 17 24 24 N 1.31517 * 119.99712 * 0.02562 * 23 21 18 25 25 Si 1.86793 * 119.99956 * 179.97438 * 23 21 18 26 26 H 1.48501 * 109.47202 * 60.00068 * 25 23 21 27 27 H 1.48497 * 109.47411 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47321 * 300.00601 * 25 23 21 29 29 H 1.08995 * 109.47215 * 182.12473 * 1 2 3 30 30 H 1.09002 * 109.46829 * 302.12679 * 1 2 3 31 31 H 1.08996 * 109.47054 * 62.12634 * 1 2 3 32 32 H 1.08998 * 110.40804 * 24.01917 * 4 2 1 33 33 H 1.08998 * 110.41376 * 261.57255 * 4 2 1 34 34 H 1.08993 * 109.47718 * 165.41825 * 6 5 4 35 35 H 1.08998 * 109.46552 * 45.41647 * 6 5 4 36 36 H 1.08002 * 119.99744 * 359.97115 * 8 7 6 37 37 H 1.08004 * 119.99577 * 179.72816 * 9 8 7 38 38 H 1.07999 * 119.99927 * 180.26554 * 10 9 8 39 39 H 1.08001 * 120.00294 * 179.78842 * 11 10 9 40 40 H 1.07996 * 120.00471 * 0.02562 * 12 7 6 41 41 H 1.09010 * 110.41284 * 158.26564 * 13 5 4 42 42 H 1.08998 * 110.41110 * 280.58646 * 13 5 4 43 43 H 1.00893 * 110.99949 * 281.81643 * 16 14 2 44 44 H 1.09006 * 109.47073 * 299.99883 * 17 16 14 45 45 H 1.08998 * 109.47208 * 60.00172 * 17 16 14 46 46 H 1.09006 * 109.46911 * 60.00195 * 19 18 17 47 47 H 1.09001 * 109.47302 * 179.97438 * 19 18 17 48 48 H 1.09005 * 109.47551 * 300.00107 * 19 18 17 49 49 H 1.08997 * 109.47150 * 60.00243 * 20 18 17 50 50 H 1.09006 * 109.46971 * 180.02562 * 20 18 17 51 51 H 1.08997 * 109.47326 * 299.99996 * 20 18 17 52 52 H 0.97000 * 119.99750 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0684 -0.7707 1.2245 5 7 3.2721 -1.4806 0.7204 6 6 3.6120 -2.6193 1.5840 7 6 4.2319 -2.1137 2.8611 8 6 3.4317 -1.8237 3.9504 9 6 4.0000 -1.3548 5.1201 10 6 5.3693 -1.1857 5.2039 11 6 6.1696 -1.4761 4.1149 12 6 5.6009 -1.9404 2.9435 13 6 2.8828 -1.9399 -0.6377 14 6 2.0658 -0.7692 -1.2251 15 1 2.7067 -0.1244 -1.8264 16 7 0.9526 -1.2802 -2.0361 17 6 1.3821 -1.5371 -3.4172 18 6 0.1984 -2.0663 -4.2294 19 6 -0.3092 -3.3665 -3.6030 20 6 -0.9250 -1.0276 -4.2295 21 6 0.6392 -2.3304 -5.6461 22 1 1.6614 -2.1395 -5.9381 23 6 -0.2624 -2.8158 -6.5695 24 7 -1.5072 -3.0478 -6.2140 25 14 0.2838 -3.1426 -8.3256 26 1 1.3747 -4.1502 -8.3254 27 1 -0.8650 -3.6563 -9.1139 28 1 0.7761 -1.8804 -8.9339 29 1 -0.3633 -1.0269 0.0381 30 1 -0.3633 0.5465 0.8703 31 1 -0.3633 0.4804 -0.9084 32 1 1.3264 -1.4857 1.5799 33 1 2.3413 -0.0774 2.0202 34 1 4.3201 -3.2678 1.0683 35 1 2.7076 -3.1813 1.8168 36 1 2.3622 -1.9591 3.8859 37 1 3.3743 -1.1241 5.9697 38 1 5.8136 -0.8234 6.1192 39 1 7.2391 -1.3408 4.1792 40 1 6.2261 -2.1670 2.0926 41 1 3.7690 -2.1272 -1.2443 42 1 2.2701 -2.8391 -0.5738 43 1 0.5537 -2.1089 -1.6214 44 1 1.7434 -0.6106 -3.8637 45 1 2.1828 -2.2767 -3.4171 46 1 -0.6280 -3.1759 -2.5782 47 1 -1.1528 -3.7434 -4.1813 48 1 0.4912 -4.1066 -3.6029 49 1 -0.5634 -0.1013 -4.6758 50 1 -1.7685 -1.4049 -4.8078 51 1 -1.2437 -0.8370 -3.2048 52 1 -2.1415 -3.3889 -6.8636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459735465.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:36 Heat of formation + Delta-G solvation = 27.484175 kcal Electronic energy + Delta-G solvation = -26917.358950 eV Core-core repulsion = 23495.182790 eV Total energy + Delta-G solvation = -3422.176160 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.94670 -38.90292 -36.52983 -34.43461 -32.55726 -31.25673 -31.08912 -30.61408 -27.61360 -26.58908 -25.57001 -25.20006 -24.51584 -23.42571 -22.74926 -21.63847 -20.89587 -19.23008 -18.53198 -16.97679 -16.31520 -15.86562 -15.60415 -15.39143 -15.08098 -14.86128 -14.44527 -14.04703 -13.69823 -13.54392 -13.39756 -13.34135 -12.83187 -12.68726 -12.46064 -12.41020 -12.22257 -11.93252 -11.79083 -11.43176 -11.18720 -11.14659 -11.09172 -11.01983 -10.84864 -10.68858 -10.59454 -10.47957 -10.26810 -10.16693 -10.05304 -9.39225 -9.10579 -9.04750 -8.98909 -8.63266 -8.53191 -8.28322 -7.66438 -5.90835 -4.01069 1.14902 1.22499 3.32740 3.37601 3.40320 3.51937 4.09138 4.44256 4.52320 4.65046 4.66879 4.80077 4.86526 4.92113 4.96668 5.15573 5.24682 5.31976 5.32443 5.34603 5.44837 5.46278 5.56579 5.68065 5.80280 5.81196 5.83157 5.87999 5.98363 6.08848 6.23259 6.27996 6.31629 6.34584 6.43206 6.44238 6.49844 6.67082 6.72485 6.77742 6.82842 6.90408 6.94983 7.07370 7.16851 7.38416 7.48371 7.74897 7.76450 7.84234 7.97082 8.21256 8.35129 8.56407 9.00221 9.63816 11.09583 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.027195 B = 0.002471 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.367424 B =11326.840687 C =11840.775085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.087 4.087 3 H 0.074 0.926 4 C 0.036 3.964 5 N -0.503 5.503 6 C 0.080 3.920 7 C -0.070 4.070 8 C -0.113 4.113 9 C -0.122 4.122 10 C -0.125 4.125 11 C -0.122 4.122 12 C -0.100 4.100 13 C 0.005 3.995 14 C 0.088 3.912 15 H 0.083 0.917 16 N -0.672 5.672 17 C 0.074 3.926 18 C 0.070 3.930 19 C -0.131 4.131 20 C -0.118 4.118 21 C -0.506 4.506 22 H 0.051 0.949 23 C 0.065 3.935 24 N -0.885 5.885 25 Si 0.888 3.112 26 H -0.279 1.279 27 H -0.288 1.288 28 H -0.278 1.278 29 H 0.050 0.950 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.078 0.922 42 H 0.045 0.955 43 H 0.336 0.664 44 H 0.056 0.944 45 H 0.012 0.988 46 H 0.009 0.991 47 H 0.083 0.917 48 H 0.018 0.982 49 H 0.018 0.982 50 H 0.073 0.927 51 H 0.020 0.980 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.678 2.831 20.962 23.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.106 4.106 3 H 0.093 0.907 4 C -0.091 4.091 5 N -0.226 5.226 6 C -0.048 4.048 7 C -0.070 4.070 8 C -0.131 4.131 9 C -0.140 4.140 10 C -0.143 4.143 11 C -0.140 4.140 12 C -0.119 4.119 13 C -0.124 4.124 14 C -0.024 4.024 15 H 0.101 0.899 16 N -0.303 5.303 17 C -0.054 4.054 18 C 0.069 3.931 19 C -0.189 4.189 20 C -0.176 4.176 21 C -0.545 4.545 22 H 0.069 0.931 23 C -0.136 4.136 24 N -0.524 5.524 25 Si 0.717 3.283 26 H -0.205 1.205 27 H -0.214 1.214 28 H -0.204 1.204 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.097 0.903 42 H 0.063 0.937 43 H 0.157 0.843 44 H 0.074 0.926 45 H 0.031 0.969 46 H 0.028 0.972 47 H 0.101 0.899 48 H 0.037 0.963 49 H 0.037 0.963 50 H 0.092 0.908 51 H 0.039 0.961 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.712 3.713 20.690 23.156 hybrid contribution 0.297 -1.633 -0.813 1.849 sum 10.009 2.080 19.877 22.352 Atomic orbital electron populations 1.21512 0.93611 1.01628 1.01247 1.21915 0.96734 0.98958 0.93014 0.90719 1.23282 0.90569 0.97427 0.97871 1.65377 1.33567 1.21865 1.01809 1.21217 0.99544 0.92564 0.91459 1.19740 0.93723 0.99016 0.94561 1.21065 0.99542 0.99441 0.93086 1.21105 0.95131 0.99937 0.97812 1.21126 0.93939 1.00575 0.98642 1.21144 0.99773 0.99685 0.93421 1.21035 0.94442 0.98788 0.97608 1.23964 1.00085 0.98034 0.90351 1.22307 0.91338 0.94713 0.94055 0.89876 1.60810 1.28964 1.37319 1.03186 1.22184 0.98122 0.98387 0.86687 1.18077 0.90605 0.91774 0.92649 1.21832 1.01650 0.98811 0.96618 1.21633 1.00965 0.97156 0.97868 1.21074 0.96038 1.43034 0.94349 0.93102 1.24885 0.94948 0.95487 0.98274 1.69824 1.03054 1.45429 1.34072 0.86728 0.77985 0.78516 0.85114 1.20511 1.21393 1.20404 0.93056 0.94418 0.90836 0.93903 0.90598 0.90057 0.93648 0.86426 0.86254 0.86354 0.86214 0.86060 0.90324 0.93713 0.84343 0.92552 0.96935 0.97226 0.89855 0.96328 0.96329 0.90833 0.96105 0.93164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.57 8.12 37.16 0.30 -1.27 16 2 C -0.09 -1.10 3.65 -89.24 -0.33 -1.43 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.04 0.42 5.25 -2.18 -0.01 0.41 16 5 N -0.50 -6.11 5.33 -231.41 -1.23 -7.34 16 6 C 0.08 0.86 4.98 -4.97 -0.02 0.84 16 7 C -0.07 -0.73 5.19 -104.62 -0.54 -1.27 16 8 C -0.11 -1.09 8.93 -39.58 -0.35 -1.45 16 9 C -0.12 -1.07 10.05 -39.59 -0.40 -1.47 16 10 C -0.12 -1.05 10.05 -39.59 -0.40 -1.45 16 11 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 12 C -0.10 -1.00 9.70 -39.58 -0.38 -1.38 16 13 C 0.01 0.07 6.05 -2.18 -0.01 0.06 16 14 C 0.09 1.26 3.34 -66.33 -0.22 1.04 16 15 H 0.08 1.27 7.86 -51.93 -0.41 0.86 16 16 N -0.67 -11.29 3.79 -105.27 -0.40 -11.69 16 17 C 0.07 1.50 4.42 -3.83 -0.02 1.49 16 18 C 0.07 1.64 0.57 -155.66 -0.09 1.56 16 19 C -0.13 -3.05 7.92 37.16 0.29 -2.75 16 20 C -0.12 -2.84 8.09 37.16 0.30 -2.54 16 21 C -0.51 -13.49 8.01 -34.44 -0.28 -13.77 16 22 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 23 C 0.06 1.75 5.15 -17.82 -0.09 1.66 16 24 N -0.88 -24.37 9.35 55.43 0.52 -23.85 16 25 Si 0.89 21.09 29.54 -169.99 -5.02 16.06 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 29 H 0.05 0.69 7.44 -51.93 -0.39 0.30 16 30 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 1.08 7.84 -51.93 -0.41 0.68 16 32 H 0.04 0.49 7.44 -51.93 -0.39 0.11 16 33 H 0.08 0.87 7.89 -51.93 -0.41 0.46 16 34 H 0.08 0.84 8.03 -51.93 -0.42 0.43 16 35 H 0.05 0.48 7.71 -51.93 -0.40 0.08 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 42 H 0.04 0.62 7.45 -51.93 -0.39 0.23 16 43 H 0.34 5.71 5.68 -39.30 -0.22 5.48 16 44 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 45 H 0.01 0.25 8.11 -51.93 -0.42 -0.17 16 46 H 0.01 0.19 6.57 -51.93 -0.34 -0.16 16 47 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.07 1.94 6.07 -51.93 -0.32 1.63 16 51 H 0.02 0.45 7.60 -51.93 -0.39 0.05 16 52 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 395.75 15.07 5.96 5.96 Total: -1.00 -26.99 395.75 -12.22 -39.21 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -9.40 Total: 4.84 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -2.65 Total: -23.20 kcal Atomic # 7 Polarization: -41.76 SS G_CDS: -1.11 Total: -42.87 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -26.99 -12.22 -39.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459735465.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.691 kcal (2) G-P(sol) polarization free energy of solvation -26.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds