Wall clock time and date at job start Tue Mar 31 2020 11:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.28558 * 2 1 4 4 C 1.54378 * 110.41004 * 122.18432 * 2 1 3 5 5 N 1.48559 * 104.59169 * 142.79388 * 4 2 1 6 6 C 1.46907 * 111.00351 * 200.96121 * 5 4 2 7 7 C 1.50702 * 109.46818 * 285.42379 * 6 5 4 8 8 C 1.38234 * 120.00257 * 89.99881 * 7 6 5 9 9 C 1.38238 * 119.99675 * 180.25732 * 8 7 6 10 10 C 1.38228 * 120.00114 * 359.50218 * 9 8 7 11 11 C 1.38234 * 120.00051 * 0.47390 * 10 9 8 12 12 C 1.38235 * 119.99522 * 269.96894 * 7 6 5 13 13 C 1.48558 * 104.22345 * 320.51895 * 5 4 2 14 14 C 1.54260 * 110.32439 * 237.87712 * 2 1 3 15 15 H 1.08995 * 110.32656 * 122.10483 * 14 2 1 16 16 N 1.46903 * 110.40833 * 359.93824 * 14 2 1 17 17 C 1.46897 * 110.99729 * 157.85999 * 16 14 2 18 18 C 1.53000 * 109.47129 * 180.02562 * 17 16 14 19 19 C 1.52997 * 109.47012 * 299.99764 * 18 17 16 20 20 C 1.52997 * 109.47159 * 59.99842 * 18 17 16 21 21 C 1.50703 * 109.47055 * 180.02562 * 18 17 16 22 22 H 1.08000 * 119.99954 * 359.97438 * 21 18 17 23 23 C 1.37884 * 119.99819 * 179.97438 * 21 18 17 24 24 N 1.31517 * 119.99712 * 0.02562 * 23 21 18 25 25 Si 1.86793 * 119.99956 * 179.97438 * 23 21 18 26 26 H 1.48501 * 109.47202 * 60.00068 * 25 23 21 27 27 H 1.48497 * 109.47411 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.47321 * 300.00601 * 25 23 21 29 29 H 1.08995 * 109.47215 * 182.12473 * 1 2 3 30 30 H 1.09002 * 109.46829 * 302.12679 * 1 2 3 31 31 H 1.08996 * 109.47054 * 62.12634 * 1 2 3 32 32 H 1.08998 * 110.40804 * 24.01917 * 4 2 1 33 33 H 1.08998 * 110.41376 * 261.57255 * 4 2 1 34 34 H 1.08993 * 109.47718 * 165.41825 * 6 5 4 35 35 H 1.08998 * 109.46552 * 45.41647 * 6 5 4 36 36 H 1.08002 * 119.99744 * 359.97115 * 8 7 6 37 37 H 1.08004 * 119.99577 * 179.72816 * 9 8 7 38 38 H 1.07999 * 119.99927 * 180.26554 * 10 9 8 39 39 H 1.08001 * 120.00294 * 179.78842 * 11 10 9 40 40 H 1.07996 * 120.00471 * 0.02562 * 12 7 6 41 41 H 1.09010 * 110.41284 * 158.26564 * 13 5 4 42 42 H 1.08998 * 110.41110 * 280.58646 * 13 5 4 43 43 H 1.00893 * 110.99949 * 281.81643 * 16 14 2 44 44 H 1.09006 * 109.47073 * 299.99883 * 17 16 14 45 45 H 1.08998 * 109.47208 * 60.00172 * 17 16 14 46 46 H 1.09006 * 109.46911 * 60.00195 * 19 18 17 47 47 H 1.09001 * 109.47302 * 179.97438 * 19 18 17 48 48 H 1.09005 * 109.47551 * 300.00107 * 19 18 17 49 49 H 1.08997 * 109.47150 * 60.00243 * 20 18 17 50 50 H 1.09006 * 109.46971 * 180.02562 * 20 18 17 51 51 H 1.08997 * 109.47326 * 299.99996 * 20 18 17 52 52 H 0.97000 * 119.99750 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0224 0.0000 4 6 2.0684 -0.7707 1.2245 5 7 3.2721 -1.4806 0.7204 6 6 3.6120 -2.6193 1.5840 7 6 4.2319 -2.1137 2.8611 8 6 3.4317 -1.8237 3.9504 9 6 4.0000 -1.3548 5.1201 10 6 5.3693 -1.1857 5.2039 11 6 6.1696 -1.4761 4.1149 12 6 5.6009 -1.9404 2.9435 13 6 2.8828 -1.9399 -0.6377 14 6 2.0658 -0.7692 -1.2251 15 1 2.7067 -0.1244 -1.8264 16 7 0.9526 -1.2802 -2.0361 17 6 1.3821 -1.5371 -3.4172 18 6 0.1984 -2.0663 -4.2294 19 6 -0.3092 -3.3665 -3.6030 20 6 -0.9250 -1.0276 -4.2295 21 6 0.6392 -2.3304 -5.6461 22 1 1.6614 -2.1395 -5.9381 23 6 -0.2624 -2.8158 -6.5695 24 7 -1.5072 -3.0478 -6.2140 25 14 0.2838 -3.1426 -8.3256 26 1 1.3747 -4.1502 -8.3254 27 1 -0.8650 -3.6563 -9.1139 28 1 0.7761 -1.8804 -8.9339 29 1 -0.3633 -1.0269 0.0381 30 1 -0.3633 0.5465 0.8703 31 1 -0.3633 0.4804 -0.9084 32 1 1.3264 -1.4857 1.5799 33 1 2.3413 -0.0774 2.0202 34 1 4.3201 -3.2678 1.0683 35 1 2.7076 -3.1813 1.8168 36 1 2.3622 -1.9591 3.8859 37 1 3.3743 -1.1241 5.9697 38 1 5.8136 -0.8234 6.1192 39 1 7.2391 -1.3408 4.1792 40 1 6.2261 -2.1670 2.0926 41 1 3.7690 -2.1272 -1.2443 42 1 2.2701 -2.8391 -0.5738 43 1 0.5537 -2.1089 -1.6214 44 1 1.7434 -0.6106 -3.8637 45 1 2.1828 -2.2767 -3.4171 46 1 -0.6280 -3.1759 -2.5782 47 1 -1.1528 -3.7434 -4.1813 48 1 0.4912 -4.1066 -3.6029 49 1 -0.5634 -0.1013 -4.6758 50 1 -1.7685 -1.4049 -4.8078 51 1 -1.2437 -0.8370 -3.2048 52 1 -2.1415 -3.3889 -6.8636 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459735465.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:35 Heat of formation + Delta-G solvation = 15.012924 kcal Electronic energy + Delta-G solvation = -26917.899744 eV Core-core repulsion = 23495.182790 eV Total energy + Delta-G solvation = -3422.716954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.87969 -39.78222 -38.15912 -35.69032 -34.02333 -32.32223 -32.10790 -31.73575 -28.75903 -27.58402 -27.48782 -27.20635 -25.69780 -24.84500 -23.42995 -22.56108 -21.72519 -20.39868 -20.34269 -17.89297 -17.63211 -17.38690 -16.70650 -16.45357 -16.20511 -16.08515 -15.69067 -15.17251 -15.02423 -14.76800 -14.41668 -14.23397 -14.13251 -13.97050 -13.83757 -13.53474 -13.29946 -13.22057 -13.03657 -12.94017 -12.85001 -12.56490 -12.48279 -12.35299 -12.13392 -12.06264 -11.92704 -11.80328 -11.76553 -11.66604 -11.36213 -11.28125 -10.83291 -10.58987 -10.32837 -9.79364 -9.74222 -9.44040 -9.07179 -7.95683 -6.12109 0.45704 0.54883 1.43106 1.44160 1.50655 2.46741 2.76185 3.16435 3.26298 3.52423 3.62858 3.75270 3.94495 3.99694 4.15799 4.20770 4.25937 4.30855 4.35736 4.45720 4.57319 4.61397 4.65462 4.66445 4.71202 4.77641 4.79709 4.86991 4.89115 4.93026 4.98834 5.07634 5.14333 5.19262 5.20168 5.27099 5.31565 5.41206 5.45586 5.55527 5.58077 5.63287 5.66249 5.71197 5.72536 5.79132 5.82175 6.00694 6.16478 6.21207 6.30338 6.37439 6.51555 6.66287 6.97559 7.55172 9.02036 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.027195 B = 0.002471 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.367424 B =11326.840687 C =11840.775085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.081 4.081 3 H 0.078 0.922 4 C 0.045 3.955 5 N -0.507 5.507 6 C 0.083 3.917 7 C -0.085 4.085 8 C -0.123 4.123 9 C -0.127 4.127 10 C -0.128 4.128 11 C -0.129 4.129 12 C -0.115 4.115 13 C 0.013 3.987 14 C 0.086 3.914 15 H 0.073 0.927 16 N -0.667 5.667 17 C 0.091 3.909 18 C 0.061 3.939 19 C -0.119 4.119 20 C -0.104 4.104 21 C -0.525 4.525 22 H 0.043 0.957 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.942 3.058 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.277 1.277 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.124 0.876 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.123 0.877 41 H 0.073 0.927 42 H 0.041 0.959 43 H 0.338 0.662 44 H 0.046 0.954 45 H 0.008 0.992 46 H 0.033 0.967 47 H 0.055 0.945 48 H 0.015 0.985 49 H 0.008 0.992 50 H 0.046 0.954 51 H 0.036 0.964 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.498 3.198 22.832 25.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.101 4.101 3 H 0.096 0.904 4 C -0.083 4.083 5 N -0.230 5.230 6 C -0.045 4.045 7 C -0.085 4.085 8 C -0.141 4.141 9 C -0.145 4.145 10 C -0.146 4.146 11 C -0.147 4.147 12 C -0.134 4.134 13 C -0.117 4.117 14 C -0.025 4.025 15 H 0.092 0.908 16 N -0.298 5.298 17 C -0.038 4.038 18 C 0.060 3.940 19 C -0.177 4.177 20 C -0.162 4.162 21 C -0.564 4.564 22 H 0.061 0.939 23 C -0.177 4.177 24 N -0.542 5.542 25 Si 0.769 3.231 26 H -0.202 1.202 27 H -0.211 1.211 28 H -0.202 1.202 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.065 0.935 36 H 0.142 0.858 37 H 0.157 0.843 38 H 0.159 0.841 39 H 0.155 0.845 40 H 0.141 0.859 41 H 0.092 0.908 42 H 0.059 0.941 43 H 0.158 0.842 44 H 0.065 0.935 45 H 0.026 0.974 46 H 0.051 0.949 47 H 0.073 0.927 48 H 0.034 0.966 49 H 0.028 0.972 50 H 0.065 0.935 51 H 0.055 0.945 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.541 4.084 22.575 25.247 hybrid contribution 0.072 -1.720 -1.324 2.172 sum 10.612 2.364 21.251 23.871 Atomic orbital electron populations 1.21432 0.93529 1.01309 1.01122 1.21875 0.96686 0.99014 0.92506 0.90364 1.23214 0.90403 0.97381 0.97304 1.65378 1.33696 1.22513 1.01426 1.21202 0.99640 0.92079 0.91554 1.19764 0.94112 1.00059 0.94584 1.21217 0.99905 0.99681 0.93319 1.21404 0.95690 0.99344 0.98093 1.21464 0.93959 0.99850 0.99354 1.21421 1.00913 0.99189 0.93151 1.21194 0.94485 0.99385 0.98334 1.23797 0.99537 0.97255 0.91134 1.22322 0.90724 0.95135 0.94303 0.90819 1.60740 1.30029 1.37146 1.01898 1.21816 0.96371 0.97431 0.88145 1.18124 0.91683 0.92040 0.92105 1.21652 1.00326 0.98309 0.97424 1.21459 1.00025 0.96565 0.98179 1.21411 0.95768 1.43082 0.96151 0.93862 1.25520 0.95114 0.95564 1.01496 1.69957 1.03631 1.45752 1.34835 0.85869 0.77606 0.78308 0.81307 1.20166 1.21150 1.20222 0.93580 0.92517 0.92803 0.93431 0.89944 0.90052 0.93490 0.85846 0.84315 0.84129 0.84456 0.85927 0.90830 0.94078 0.84228 0.93549 0.97395 0.94862 0.92653 0.96605 0.97242 0.93476 0.94461 0.93372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.79 8.12 71.98 0.58 -2.21 16 2 C -0.08 -1.93 3.65 -9.90 -0.04 -1.97 16 3 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 4 C 0.04 0.96 5.25 86.45 0.45 1.41 16 5 N -0.51 -11.64 5.33 -886.04 -4.72 -16.36 16 6 C 0.08 1.70 4.98 85.56 0.43 2.12 16 7 C -0.08 -1.66 5.19 -19.87 -0.10 -1.76 16 8 C -0.12 -2.16 8.93 22.27 0.20 -1.97 16 9 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 10 C -0.13 -1.86 10.05 22.27 0.22 -1.63 16 11 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 12 C -0.12 -2.16 9.70 22.27 0.22 -1.94 16 13 C 0.01 0.32 6.05 86.45 0.52 0.85 16 14 C 0.09 2.41 3.34 45.81 0.15 2.56 16 15 H 0.07 2.21 7.86 -2.39 -0.02 2.20 16 16 N -0.67 -21.91 3.79 -486.96 -1.85 -23.76 16 17 C 0.09 3.68 4.42 86.30 0.38 4.06 16 18 C 0.06 2.90 0.57 -52.93 -0.03 2.87 16 19 C -0.12 -5.51 7.92 71.98 0.57 -4.94 16 20 C -0.10 -5.02 8.09 71.98 0.58 -4.44 16 21 C -0.53 -28.24 8.01 25.60 0.21 -28.04 16 22 H 0.04 2.33 7.74 -2.91 -0.02 2.31 16 23 C 0.02 1.20 5.15 84.66 0.44 1.63 16 24 N -0.90 -50.28 9.35 21.45 0.20 -50.08 16 25 Si 0.94 43.43 29.54 68.60 2.03 45.46 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 27 H -0.29 -12.98 7.11 99.48 0.71 -12.28 16 28 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 29 H 0.05 1.15 7.44 -2.39 -0.02 1.13 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.52 7.84 -2.39 -0.02 1.50 16 32 H 0.05 0.99 7.44 -2.39 -0.02 0.97 16 33 H 0.08 1.69 7.89 -2.39 -0.02 1.68 16 34 H 0.08 1.63 8.03 -2.39 -0.02 1.61 16 35 H 0.05 0.94 7.71 -2.39 -0.02 0.92 16 36 H 0.12 1.94 8.06 -2.91 -0.02 1.92 16 37 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 38 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 39 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 40 H 0.12 2.14 8.06 -2.91 -0.02 2.12 16 41 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 42 H 0.04 1.09 7.45 -2.39 -0.02 1.07 16 43 H 0.34 11.04 5.68 -89.70 -0.51 10.53 16 44 H 0.05 1.95 8.08 -2.38 -0.02 1.93 16 45 H 0.01 0.32 8.11 -2.39 -0.02 0.30 16 46 H 0.03 1.33 6.57 -2.38 -0.02 1.32 16 47 H 0.05 2.88 6.07 -2.39 -0.01 2.87 16 48 H 0.01 0.69 8.14 -2.38 -0.02 0.67 16 49 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 50 H 0.05 2.51 6.07 -2.38 -0.01 2.50 16 51 H 0.04 1.62 7.60 -2.39 -0.02 1.60 16 52 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -57.05 395.75 1.25 -55.81 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.36 Total: 25.88 kcal Atomic # 6 Polarization: -42.17 SS G_CDS: 5.23 Total: -36.94 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -6.37 Total: -90.20 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Total: -57.05 1.25 -55.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459735465.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.818 kcal (2) G-P(sol) polarization free energy of solvation -57.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds