Wall clock time and date at job start Tue Mar 31 2020 11:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.64568 * 2 1 4 4 C 1.54932 * 110.72334 * 236.65473 * 2 1 3 5 5 N 1.48544 * 103.22650 * 204.22798 * 4 2 1 6 6 C 1.46899 * 110.99995 * 159.71847 * 5 4 2 7 7 C 1.50706 * 109.46845 * 52.60260 * 6 5 4 8 8 C 1.38237 * 119.99761 * 90.00406 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.94731 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00191 * 269.97507 * 7 6 5 13 13 C 1.47898 * 105.81742 * 39.20665 * 5 4 2 14 14 C 1.53991 * 107.06038 * 334.66960 * 13 5 4 15 15 H 1.08999 * 110.30960 * 120.14461 * 14 13 5 16 16 N 1.46904 * 110.30973 * 242.31162 * 14 13 5 17 17 C 1.46903 * 111.00108 * 273.54876 * 16 14 13 18 18 C 1.52996 * 109.47048 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.47374 * 299.99475 * 18 17 16 20 20 C 1.52999 * 109.47391 * 59.99947 * 18 17 16 21 21 C 1.50703 * 109.46776 * 179.97438 * 18 17 16 22 22 H 1.07999 * 119.99959 * 359.97438 * 21 18 17 23 23 C 1.37876 * 120.00022 * 180.02562 * 21 18 17 24 24 N 1.31525 * 119.99906 * 359.97438 * 23 21 18 25 25 Si 1.86796 * 120.00404 * 180.02562 * 23 21 18 26 26 H 1.48498 * 109.47488 * 89.99363 * 25 23 21 27 27 H 1.48498 * 109.47450 * 209.99896 * 25 23 21 28 28 H 1.48502 * 109.46833 * 329.99680 * 25 23 21 29 29 H 1.09008 * 109.47368 * 296.84830 * 1 2 3 30 30 H 1.09002 * 109.47107 * 56.84808 * 1 2 3 31 31 H 1.08997 * 109.47536 * 176.85015 * 1 2 3 32 32 H 1.08994 * 110.67033 * 85.79414 * 4 2 1 33 33 H 1.08997 * 110.66732 * 322.65903 * 4 2 1 34 34 H 1.09003 * 109.47282 * 292.60414 * 6 5 4 35 35 H 1.09000 * 109.46840 * 172.60033 * 6 5 4 36 36 H 1.08005 * 120.00088 * 359.96779 * 8 7 6 37 37 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 38 38 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 39 39 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 40 40 H 1.07999 * 119.99990 * 0.02562 * 12 7 6 41 41 H 1.08996 * 109.92127 * 94.02794 * 13 5 4 42 42 H 1.09006 * 109.91506 * 215.11948 * 13 5 4 43 43 H 1.00902 * 111.00278 * 149.58876 * 16 14 13 44 44 H 1.09001 * 109.46561 * 299.99680 * 17 16 14 45 45 H 1.08994 * 109.47245 * 59.99469 * 17 16 14 46 46 H 1.09006 * 109.46477 * 60.00219 * 19 18 17 47 47 H 1.08993 * 109.47237 * 179.97438 * 19 18 17 48 48 H 1.09003 * 109.46787 * 300.00682 * 19 18 17 49 49 H 1.09001 * 109.47497 * 59.99550 * 20 18 17 50 50 H 1.09004 * 109.47010 * 179.97438 * 20 18 17 51 51 H 1.08998 * 109.46986 * 299.99539 * 20 18 17 52 52 H 0.96999 * 119.99742 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0782 -0.7965 -1.2105 5 7 3.4318 -1.2105 -0.7601 6 6 3.9211 -2.3524 -1.5440 7 6 3.8213 -2.0327 -3.0133 8 6 4.8817 -1.4288 -3.6629 9 6 4.7903 -1.1360 -5.0107 10 6 3.6390 -1.4480 -5.7094 11 6 2.5768 -2.0474 -5.0588 12 6 2.6696 -2.3437 -3.7117 13 6 3.2893 -1.5698 0.6675 14 6 2.0770 -0.7907 1.2106 15 1 1.3207 -1.4807 1.5848 16 7 2.4982 0.1315 2.2737 17 6 2.5182 -0.5432 3.5785 18 6 2.9599 0.4470 4.6579 19 6 4.3615 0.9663 4.3309 20 6 1.9795 1.6206 4.7055 21 6 2.9798 -0.2450 5.9965 22 1 2.7044 -1.2867 6.0700 23 6 3.3485 0.4521 7.1275 24 7 3.6833 1.7208 7.0381 25 14 3.3738 -0.4058 8.7867 26 1 4.7154 -0.9992 9.0167 27 1 3.0779 0.5793 9.8578 28 1 2.3480 -1.4794 8.8044 29 1 -0.3634 0.4642 0.9169 30 1 -0.3633 0.5620 -0.8604 31 1 -0.3634 -1.0261 -0.0565 32 1 2.1444 -0.1593 -2.0923 33 1 1.4560 -1.6688 -1.4107 34 1 3.3165 -3.2317 -1.3216 35 1 4.9611 -2.5517 -1.2853 36 1 5.7815 -1.1857 -3.1172 37 1 5.6186 -0.6638 -5.5181 38 1 3.5679 -1.2196 -6.7625 39 1 1.6757 -2.2872 -5.6036 40 1 1.8412 -2.8156 -3.2043 41 1 3.1161 -2.6414 0.7653 42 1 4.1900 -1.2882 1.2130 43 1 1.9073 0.9490 2.2983 44 1 1.5195 -0.9127 3.8117 45 1 3.2162 -1.3795 3.5444 46 1 4.3466 1.4669 3.3627 47 1 4.6760 1.6720 5.0996 48 1 5.0599 0.1301 4.2970 49 1 0.9809 1.2507 4.9385 50 1 2.2940 2.3258 5.4749 51 1 1.9647 2.1212 3.7374 52 1 3.9424 2.2113 7.8338 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459735466.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:38 Heat of formation + Delta-G solvation = 25.022671 kcal Electronic energy + Delta-G solvation = -26872.685137 eV Core-core repulsion = 23450.402238 eV Total energy + Delta-G solvation = -3422.282899 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.99136 -38.76670 -36.52798 -34.43655 -32.63394 -31.34645 -31.09461 -30.59441 -27.53659 -26.80908 -25.54095 -25.20684 -24.65737 -23.27898 -22.77798 -21.35172 -20.57803 -19.87365 -18.29452 -16.95151 -16.44769 -15.81926 -15.59607 -15.37828 -15.16206 -14.74134 -14.27676 -13.98982 -13.83213 -13.64768 -13.48772 -13.13140 -12.99038 -12.73949 -12.65427 -12.39221 -12.13339 -11.99391 -11.76412 -11.62528 -11.17135 -11.14835 -11.03358 -10.94841 -10.87363 -10.75972 -10.66821 -10.54913 -10.33889 -10.15223 -10.01671 -9.35586 -9.09575 -9.05222 -8.95122 -8.58937 -8.32138 -8.26643 -7.67402 -5.88899 -3.99214 1.14324 1.22690 3.32374 3.39304 3.41920 3.53937 4.15542 4.44572 4.49147 4.65772 4.69003 4.71969 4.79693 4.86639 4.94992 5.10499 5.24207 5.32120 5.36422 5.40940 5.45343 5.50635 5.52476 5.56704 5.66029 5.77722 5.82654 5.87488 5.90899 5.99111 6.14439 6.22087 6.27890 6.32271 6.33571 6.38512 6.46113 6.49224 6.74754 6.80640 6.91697 6.95048 7.05647 7.12067 7.20191 7.43747 7.52158 7.78609 7.79241 7.87615 8.02253 8.24615 8.38417 8.58761 9.02332 9.65613 11.11506 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026434 B = 0.002476 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.996847 B =11305.469791 C =11651.036597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.099 4.099 3 H 0.092 0.908 4 C 0.046 3.954 5 N -0.504 5.504 6 C 0.083 3.917 7 C -0.077 4.077 8 C -0.098 4.098 9 C -0.122 4.122 10 C -0.124 4.124 11 C -0.123 4.123 12 C -0.114 4.114 13 C 0.046 3.954 14 C 0.082 3.918 15 H 0.043 0.957 16 N -0.673 5.673 17 C 0.075 3.925 18 C 0.069 3.931 19 C -0.118 4.118 20 C -0.132 4.132 21 C -0.506 4.506 22 H 0.051 0.949 23 C 0.065 3.935 24 N -0.884 5.884 25 Si 0.888 3.112 26 H -0.282 1.282 27 H -0.288 1.288 28 H -0.277 1.277 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.117 0.883 41 H 0.036 0.964 42 H 0.095 0.905 43 H 0.339 0.661 44 H 0.011 0.989 45 H 0.055 0.945 46 H 0.021 0.979 47 H 0.073 0.927 48 H 0.017 0.983 49 H 0.018 0.982 50 H 0.083 0.917 51 H 0.011 0.989 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.845 -6.069 -22.960 23.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 H 0.110 0.890 4 C -0.082 4.082 5 N -0.228 5.228 6 C -0.045 4.045 7 C -0.077 4.077 8 C -0.117 4.117 9 C -0.140 4.140 10 C -0.142 4.142 11 C -0.141 4.141 12 C -0.133 4.133 13 C -0.082 4.082 14 C -0.029 4.029 15 H 0.061 0.939 16 N -0.306 5.306 17 C -0.053 4.053 18 C 0.069 3.931 19 C -0.176 4.176 20 C -0.190 4.190 21 C -0.544 4.544 22 H 0.069 0.931 23 C -0.136 4.136 24 N -0.523 5.523 25 Si 0.716 3.284 26 H -0.208 1.208 27 H -0.214 1.214 28 H -0.202 1.202 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.135 0.865 41 H 0.054 0.946 42 H 0.114 0.886 43 H 0.159 0.841 44 H 0.029 0.971 45 H 0.073 0.927 46 H 0.040 0.960 47 H 0.092 0.908 48 H 0.036 0.964 49 H 0.037 0.963 50 H 0.102 0.898 51 H 0.030 0.970 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.727 -5.610 -22.991 23.728 hybrid contribution -1.523 -1.327 1.244 2.373 sum -3.249 -6.937 -21.747 23.056 Atomic orbital electron populations 1.21790 0.94848 1.01544 1.01959 1.22274 0.94867 1.00658 0.94066 0.88998 1.23232 0.89061 0.98083 0.97845 1.64915 1.23395 1.32044 1.02410 1.21276 1.01668 0.92173 0.89391 1.19802 0.94193 0.98574 0.95125 1.21080 0.98698 0.97572 0.94315 1.21165 0.98048 1.00218 0.94555 1.21135 0.93828 0.99441 0.99806 1.21092 0.98725 0.99599 0.94647 1.21079 0.97281 1.00460 0.94446 1.23008 1.00527 0.96614 0.88033 1.22366 0.94114 0.94241 0.92207 0.93929 1.60689 1.57100 1.08285 1.04505 1.22191 0.97607 0.97754 0.87741 1.18079 0.92706 0.91247 0.91079 1.21632 0.97415 0.99806 0.98774 1.21832 0.97610 1.00650 0.98897 1.21110 1.45002 0.96535 0.91802 0.93107 1.24886 0.95240 0.94836 0.98639 1.69841 1.45997 1.07982 1.28499 0.86672 0.78237 0.79332 0.84158 1.20805 1.21351 1.20173 0.92289 0.92514 0.92978 0.90380 0.94114 0.94029 0.89714 0.85777 0.86140 0.86347 0.86293 0.86501 0.94563 0.88635 0.84114 0.97090 0.92692 0.95983 0.90834 0.96374 0.96323 0.89843 0.97029 0.93221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.16 37.15 0.34 -1.21 16 2 C -0.10 -1.25 3.12 -88.76 -0.28 -1.53 16 3 H 0.09 1.27 7.99 -51.93 -0.42 0.85 16 4 C 0.05 0.54 4.41 -1.89 -0.01 0.53 16 5 N -0.50 -6.49 5.39 -231.89 -1.25 -7.74 16 6 C 0.08 0.91 5.19 -4.97 -0.03 0.88 16 7 C -0.08 -0.80 4.59 -104.62 -0.48 -1.28 16 8 C -0.10 -0.98 9.70 -39.58 -0.38 -1.37 16 9 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 10 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 11 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 12 C -0.11 -1.08 8.35 -39.58 -0.33 -1.41 16 13 C 0.05 0.66 6.40 -2.76 -0.02 0.64 16 14 C 0.08 1.21 2.89 -66.35 -0.19 1.02 16 15 H 0.04 0.65 7.57 -51.93 -0.39 0.26 16 16 N -0.67 -11.91 5.39 -105.29 -0.57 -12.48 16 17 C 0.08 1.57 4.42 -3.82 -0.02 1.55 16 18 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 19 C -0.12 -2.91 8.09 37.16 0.30 -2.61 16 20 C -0.13 -3.12 7.92 37.16 0.29 -2.83 16 21 C -0.51 -13.64 8.01 -34.44 -0.28 -13.91 16 22 H 0.05 1.37 7.74 -52.49 -0.41 0.97 16 23 C 0.06 1.76 5.15 -17.82 -0.09 1.67 16 24 N -0.88 -24.59 9.35 55.43 0.52 -24.07 16 25 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 27 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 29 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.54 8.10 -51.93 -0.42 0.11 16 32 H 0.08 0.93 7.73 -51.93 -0.40 0.53 16 33 H 0.04 0.45 6.97 -51.93 -0.36 0.08 16 34 H 0.04 0.44 7.76 -51.93 -0.40 0.04 16 35 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 36 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 40 H 0.12 1.00 7.39 -52.49 -0.39 0.61 16 41 H 0.04 0.49 7.57 -51.93 -0.39 0.09 16 42 H 0.10 1.58 7.93 -51.93 -0.41 1.17 16 43 H 0.34 5.98 6.43 -39.29 -0.25 5.73 16 44 H 0.01 0.23 8.08 -51.93 -0.42 -0.19 16 45 H 0.05 1.17 8.11 -51.93 -0.42 0.75 16 46 H 0.02 0.50 7.60 -51.93 -0.39 0.10 16 47 H 0.07 1.98 6.07 -51.93 -0.32 1.66 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.08 2.19 6.07 -51.93 -0.32 1.88 16 51 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 52 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 395.96 15.07 5.97 5.97 Total: -1.00 -27.72 395.96 -12.19 -39.91 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -9.39 Total: 4.87 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: -2.45 Total: -22.63 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: -1.30 Total: -44.29 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -27.72 -12.19 -39.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459735466.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.930 kcal (2) G-P(sol) polarization free energy of solvation -27.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds