Wall clock time and date at job start Tue Mar 31 2020 11:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 110.64568 * 2 1 4 4 C 1.54932 * 110.72334 * 236.65473 * 2 1 3 5 5 N 1.48544 * 103.22650 * 204.22798 * 4 2 1 6 6 C 1.46899 * 110.99995 * 159.71847 * 5 4 2 7 7 C 1.50706 * 109.46845 * 52.60260 * 6 5 4 8 8 C 1.38237 * 119.99761 * 90.00406 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.94731 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00191 * 269.97507 * 7 6 5 13 13 C 1.47898 * 105.81742 * 39.20665 * 5 4 2 14 14 C 1.53991 * 107.06038 * 334.66960 * 13 5 4 15 15 H 1.08999 * 110.30960 * 120.14461 * 14 13 5 16 16 N 1.46904 * 110.30973 * 242.31162 * 14 13 5 17 17 C 1.46903 * 111.00108 * 273.54876 * 16 14 13 18 18 C 1.52996 * 109.47048 * 180.02562 * 17 16 14 19 19 C 1.53000 * 109.47374 * 299.99475 * 18 17 16 20 20 C 1.52999 * 109.47391 * 59.99947 * 18 17 16 21 21 C 1.50703 * 109.46776 * 179.97438 * 18 17 16 22 22 H 1.07999 * 119.99959 * 359.97438 * 21 18 17 23 23 C 1.37876 * 120.00022 * 180.02562 * 21 18 17 24 24 N 1.31525 * 119.99906 * 359.97438 * 23 21 18 25 25 Si 1.86796 * 120.00404 * 180.02562 * 23 21 18 26 26 H 1.48498 * 109.47488 * 89.99363 * 25 23 21 27 27 H 1.48498 * 109.47450 * 209.99896 * 25 23 21 28 28 H 1.48502 * 109.46833 * 329.99680 * 25 23 21 29 29 H 1.09008 * 109.47368 * 296.84830 * 1 2 3 30 30 H 1.09002 * 109.47107 * 56.84808 * 1 2 3 31 31 H 1.08997 * 109.47536 * 176.85015 * 1 2 3 32 32 H 1.08994 * 110.67033 * 85.79414 * 4 2 1 33 33 H 1.08997 * 110.66732 * 322.65903 * 4 2 1 34 34 H 1.09003 * 109.47282 * 292.60414 * 6 5 4 35 35 H 1.09000 * 109.46840 * 172.60033 * 6 5 4 36 36 H 1.08005 * 120.00088 * 359.96779 * 8 7 6 37 37 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 38 38 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 39 39 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 40 40 H 1.07999 * 119.99990 * 0.02562 * 12 7 6 41 41 H 1.08996 * 109.92127 * 94.02794 * 13 5 4 42 42 H 1.09006 * 109.91506 * 215.11948 * 13 5 4 43 43 H 1.00902 * 111.00278 * 149.58876 * 16 14 13 44 44 H 1.09001 * 109.46561 * 299.99680 * 17 16 14 45 45 H 1.08994 * 109.47245 * 59.99469 * 17 16 14 46 46 H 1.09006 * 109.46477 * 60.00219 * 19 18 17 47 47 H 1.08993 * 109.47237 * 179.97438 * 19 18 17 48 48 H 1.09003 * 109.46787 * 300.00682 * 19 18 17 49 49 H 1.09001 * 109.47497 * 59.99550 * 20 18 17 50 50 H 1.09004 * 109.47010 * 179.97438 * 20 18 17 51 51 H 1.08998 * 109.46986 * 299.99539 * 20 18 17 52 52 H 0.96999 * 119.99742 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0782 -0.7965 -1.2105 5 7 3.4318 -1.2105 -0.7601 6 6 3.9211 -2.3524 -1.5440 7 6 3.8213 -2.0327 -3.0133 8 6 4.8817 -1.4288 -3.6629 9 6 4.7903 -1.1360 -5.0107 10 6 3.6390 -1.4480 -5.7094 11 6 2.5768 -2.0474 -5.0588 12 6 2.6696 -2.3437 -3.7117 13 6 3.2893 -1.5698 0.6675 14 6 2.0770 -0.7907 1.2106 15 1 1.3207 -1.4807 1.5848 16 7 2.4982 0.1315 2.2737 17 6 2.5182 -0.5432 3.5785 18 6 2.9599 0.4470 4.6579 19 6 4.3615 0.9663 4.3309 20 6 1.9795 1.6206 4.7055 21 6 2.9798 -0.2450 5.9965 22 1 2.7044 -1.2867 6.0700 23 6 3.3485 0.4521 7.1275 24 7 3.6833 1.7208 7.0381 25 14 3.3738 -0.4058 8.7867 26 1 4.7154 -0.9992 9.0167 27 1 3.0779 0.5793 9.8578 28 1 2.3480 -1.4794 8.8044 29 1 -0.3634 0.4642 0.9169 30 1 -0.3633 0.5620 -0.8604 31 1 -0.3634 -1.0261 -0.0565 32 1 2.1444 -0.1593 -2.0923 33 1 1.4560 -1.6688 -1.4107 34 1 3.3165 -3.2317 -1.3216 35 1 4.9611 -2.5517 -1.2853 36 1 5.7815 -1.1857 -3.1172 37 1 5.6186 -0.6638 -5.5181 38 1 3.5679 -1.2196 -6.7625 39 1 1.6757 -2.2872 -5.6036 40 1 1.8412 -2.8156 -3.2043 41 1 3.1161 -2.6414 0.7653 42 1 4.1900 -1.2882 1.2130 43 1 1.9073 0.9490 2.2983 44 1 1.5195 -0.9127 3.8117 45 1 3.2162 -1.3795 3.5444 46 1 4.3466 1.4669 3.3627 47 1 4.6760 1.6720 5.0996 48 1 5.0599 0.1301 4.2970 49 1 0.9809 1.2507 4.9385 50 1 2.2940 2.3258 5.4749 51 1 1.9647 2.1212 3.7374 52 1 3.9424 2.2113 7.8338 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459735466.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:38 Heat of formation + Delta-G solvation = 10.878869 kcal Electronic energy + Delta-G solvation = -26873.298459 eV Core-core repulsion = 23450.402238 eV Total energy + Delta-G solvation = -3422.896220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.89516 -39.69067 -38.19085 -35.69278 -34.10504 -32.39340 -32.12867 -31.74205 -28.70580 -27.71209 -27.49168 -27.24302 -26.00788 -24.54563 -23.46421 -22.23909 -21.54501 -21.00870 -20.15459 -17.99390 -17.66013 -17.34271 -16.69452 -16.52798 -16.17506 -16.03128 -15.58521 -15.25024 -15.03783 -14.88530 -14.36948 -14.22593 -14.08839 -14.06709 -13.73302 -13.60108 -13.40809 -13.26676 -13.02209 -13.00842 -12.69920 -12.64801 -12.47524 -12.43747 -12.16764 -12.09836 -11.91765 -11.86186 -11.74446 -11.66420 -11.50983 -11.29960 -10.85773 -10.57786 -10.33664 -9.76602 -9.72501 -9.28116 -9.14016 -7.95841 -6.12693 0.45198 0.55130 1.41932 1.43982 1.52100 2.46611 2.79900 3.24124 3.26063 3.37158 3.58138 3.71703 3.91246 3.97386 4.16724 4.22155 4.30259 4.31653 4.38790 4.47190 4.55558 4.59282 4.61416 4.63953 4.66688 4.72807 4.79715 4.83887 4.87629 4.93221 4.98436 5.06870 5.12091 5.14819 5.20097 5.22027 5.24933 5.30323 5.34843 5.45660 5.55746 5.59681 5.66654 5.70835 5.74166 5.78625 5.92395 6.08821 6.16791 6.20506 6.30494 6.37514 6.51552 6.67255 6.97088 7.54728 9.02245 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.026434 B = 0.002476 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.996847 B =11305.469791 C =11651.036597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 H 0.080 0.920 4 C 0.056 3.944 5 N -0.516 5.516 6 C 0.085 3.915 7 C -0.090 4.090 8 C -0.115 4.115 9 C -0.129 4.129 10 C -0.127 4.127 11 C -0.126 4.126 12 C -0.121 4.121 13 C 0.051 3.949 14 C 0.081 3.919 15 H 0.043 0.957 16 N -0.675 5.675 17 C 0.093 3.907 18 C 0.061 3.939 19 C -0.104 4.104 20 C -0.121 4.121 21 C -0.525 4.525 22 H 0.044 0.956 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.944 3.056 26 H -0.280 1.280 27 H -0.285 1.285 28 H -0.273 1.273 29 H 0.051 0.949 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.137 0.863 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.125 0.875 41 H 0.044 0.956 42 H 0.069 0.931 43 H 0.340 0.660 44 H 0.007 0.993 45 H 0.046 0.954 46 H 0.033 0.967 47 H 0.047 0.953 48 H 0.008 0.992 49 H 0.017 0.983 50 H 0.055 0.945 51 H 0.033 0.967 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.950 -6.706 -24.884 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.098 0.902 4 C -0.072 4.072 5 N -0.240 5.240 6 C -0.042 4.042 7 C -0.091 4.091 8 C -0.133 4.133 9 C -0.147 4.147 10 C -0.145 4.145 11 C -0.144 4.144 12 C -0.139 4.139 13 C -0.077 4.077 14 C -0.030 4.030 15 H 0.061 0.939 16 N -0.307 5.307 17 C -0.036 4.036 18 C 0.060 3.940 19 C -0.162 4.162 20 C -0.178 4.178 21 C -0.564 4.564 22 H 0.062 0.938 23 C -0.177 4.177 24 N -0.542 5.542 25 Si 0.771 3.229 26 H -0.206 1.206 27 H -0.210 1.210 28 H -0.198 1.198 29 H 0.070 0.930 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.139 0.861 37 H 0.155 0.845 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.143 0.857 41 H 0.062 0.938 42 H 0.087 0.913 43 H 0.160 0.840 44 H 0.025 0.975 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.066 0.934 48 H 0.027 0.973 49 H 0.036 0.964 50 H 0.074 0.926 51 H 0.052 0.948 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.833 -6.252 -24.930 25.858 hybrid contribution -1.146 -1.124 1.759 2.381 sum -3.979 -7.376 -23.171 24.640 Atomic orbital electron populations 1.21754 0.93207 1.02298 1.02371 1.22226 0.96148 0.99665 0.93209 0.90197 1.23168 0.88497 0.98326 0.97232 1.64856 1.24296 1.33128 1.01723 1.21251 1.01442 0.91685 0.89819 1.19794 0.94967 0.99647 0.94668 1.21206 0.98770 0.98244 0.95129 1.21419 0.98974 1.00085 0.94196 1.21470 0.93391 0.98644 1.00966 1.21399 0.99606 0.98982 0.94422 1.21225 0.97138 1.00548 0.95036 1.22846 0.99036 0.96918 0.88914 1.22436 0.94426 0.94092 0.92032 0.93887 1.60609 1.57676 1.08743 1.03717 1.21821 0.96860 0.96569 0.88346 1.18125 0.92577 0.92021 0.91240 1.21457 0.97572 0.98789 0.98366 1.21659 0.97157 0.99889 0.99137 1.21429 1.45088 0.96443 0.93410 0.93811 1.25540 0.95123 0.95463 1.01623 1.69974 1.46316 1.08868 1.29089 0.85783 0.78162 0.78427 0.80551 1.20621 1.21049 1.19783 0.93022 0.90825 0.92198 0.90256 0.92825 0.93470 0.90099 0.86066 0.84548 0.84106 0.84185 0.85696 0.93816 0.91273 0.84012 0.97491 0.93591 0.94841 0.93375 0.97256 0.96405 0.92598 0.94801 0.93350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.16 71.98 0.66 -2.02 16 2 C -0.09 -2.20 3.12 -9.59 -0.03 -2.23 16 3 H 0.08 2.10 7.99 -2.39 -0.02 2.09 16 4 C 0.06 1.20 4.41 86.65 0.38 1.58 16 5 N -0.52 -12.88 5.39 -887.56 -4.78 -17.66 16 6 C 0.09 1.81 5.19 85.56 0.44 2.26 16 7 C -0.09 -1.78 4.59 -19.86 -0.09 -1.87 16 8 C -0.11 -2.22 9.70 22.27 0.22 -2.00 16 9 C -0.13 -2.08 10.05 22.27 0.22 -1.85 16 10 C -0.13 -1.81 10.05 22.27 0.22 -1.58 16 11 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 12 C -0.12 -2.05 8.35 22.27 0.19 -1.87 16 13 C 0.05 1.45 6.40 86.45 0.55 2.00 16 14 C 0.08 2.31 2.89 45.79 0.13 2.45 16 15 H 0.04 1.25 7.57 -2.39 -0.02 1.24 16 16 N -0.67 -23.56 5.39 -487.04 -2.62 -26.18 16 17 C 0.09 3.86 4.42 86.30 0.38 4.24 16 18 C 0.06 2.96 0.57 -52.93 -0.03 2.93 16 19 C -0.10 -5.17 8.09 71.98 0.58 -4.59 16 20 C -0.12 -5.69 7.92 71.98 0.57 -5.12 16 21 C -0.52 -28.55 8.01 25.60 0.21 -28.35 16 22 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 23 C 0.02 1.17 5.15 84.65 0.44 1.61 16 24 N -0.90 -50.88 9.35 21.45 0.20 -50.68 16 25 Si 0.94 43.68 29.54 68.60 2.03 45.71 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 27 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 28 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 29 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 32 H 0.08 1.73 7.73 -2.39 -0.02 1.71 16 33 H 0.05 1.03 6.97 -2.39 -0.02 1.02 16 34 H 0.05 0.94 7.76 -2.39 -0.02 0.92 16 35 H 0.08 1.73 8.09 -2.39 -0.02 1.71 16 36 H 0.12 2.29 8.06 -2.91 -0.02 2.26 16 37 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 39 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 40 H 0.13 1.85 7.39 -2.91 -0.02 1.83 16 41 H 0.04 1.15 7.57 -2.39 -0.02 1.13 16 42 H 0.07 2.32 7.93 -2.38 -0.02 2.30 16 43 H 0.34 11.69 6.43 -89.69 -0.58 11.11 16 44 H 0.01 0.29 8.08 -2.39 -0.02 0.27 16 45 H 0.05 1.97 8.11 -2.39 -0.02 1.95 16 46 H 0.03 1.53 7.60 -2.38 -0.02 1.51 16 47 H 0.05 2.63 6.07 -2.39 -0.01 2.61 16 48 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 49 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.06 2.96 6.07 -2.38 -0.01 2.94 16 51 H 0.03 1.40 6.57 -2.39 -0.02 1.38 16 52 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -58.98 395.96 0.38 -58.60 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.29 Total: 26.24 kcal Atomic # 6 Polarization: -41.30 SS G_CDS: 5.27 Total: -36.03 kcal Atomic # 7 Polarization: -87.31 SS G_CDS: -7.21 Total: -94.52 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -58.98 0.38 -58.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459735466.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.480 kcal (2) G-P(sol) polarization free energy of solvation -58.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds