Wall clock time and date at job start Tue Mar 31 2020 11:29:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09001 * 110.36825 * 2 1
4 4 C 1.54375 * 110.32649 * 237.81649 * 2 1 3
5 5 N 1.48560 * 104.59836 * 217.25132 * 4 2 1
6 6 C 1.46892 * 111.00477 * 159.03688 * 5 4 2
7 7 C 1.50705 * 109.46861 * 69.87659 * 6 5 4
8 8 C 1.38234 * 120.00293 * 90.00323 * 7 6 5
9 9 C 1.38233 * 120.00297 * 179.97438 * 8 7 6
10 10 C 1.38238 * 119.99760 * 359.97295 * 9 8 7
11 11 C 1.38234 * 119.99942 * 0.02705 * 10 9 8
12 12 C 1.38233 * 120.00297 * 359.97295 * 11 10 9
13 13 C 1.48560 * 104.22062 * 39.47903 * 5 4 2
14 14 C 1.54260 * 110.32634 * 122.17900 * 2 1 3
15 15 H 1.09003 * 110.32355 * 237.79665 * 14 2 1
16 16 N 1.46906 * 110.32045 * 359.89647 * 14 2 1
17 17 C 1.46896 * 110.99788 * 204.99974 * 16 14 2
18 18 C 1.53005 * 109.47012 * 180.02562 * 17 16 14
19 19 C 1.53004 * 109.47186 * 300.00486 * 18 17 16
20 20 C 1.53002 * 109.46829 * 60.00211 * 18 17 16
21 21 C 1.50700 * 109.47192 * 180.02562 * 18 17 16
22 22 H 1.07995 * 120.00145 * 1.23769 * 21 18 17
23 23 C 1.37876 * 119.99824 * 181.24187 * 21 18 17
24 24 N 1.31511 * 120.00052 * 194.10921 * 23 21 18
25 25 Si 1.86801 * 120.00258 * 14.11596 * 23 21 18
26 26 H 1.48491 * 109.47528 * 84.53034 * 25 23 21
27 27 H 1.48497 * 109.47089 * 204.53553 * 25 23 21
28 28 H 1.48501 * 109.46704 * 324.52979 * 25 23 21
29 29 H 1.09003 * 109.46762 * 180.73156 * 1 2 3
30 30 H 1.08996 * 109.47586 * 300.73130 * 1 2 3
31 31 H 1.08997 * 109.47251 * 60.73404 * 1 2 3
32 32 H 1.09001 * 110.41729 * 98.46964 * 4 2 1
33 33 H 1.08996 * 110.51207 * 336.07950 * 4 2 1
34 34 H 1.08993 * 109.47573 * 309.87643 * 6 5 4
35 35 H 1.09000 * 109.47580 * 189.87454 * 6 5 4
36 36 H 1.08003 * 119.99703 * 359.97438 * 8 7 6
37 37 H 1.07992 * 119.99938 * 179.69847 * 9 8 7
38 38 H 1.07998 * 120.00025 * 179.97438 * 10 9 8
39 39 H 1.08007 * 119.99756 * 180.02562 * 11 10 9
40 40 H 1.08000 * 120.00381 * 180.02562 * 12 11 10
41 41 H 1.09002 * 110.41173 * 79.30130 * 13 5 4
42 42 H 1.09001 * 110.41253 * 201.73884 * 13 5 4
43 43 H 1.00897 * 111.00329 * 328.95810 * 16 14 2
44 44 H 1.08996 * 109.47536 * 300.00156 * 17 16 14
45 45 H 1.08998 * 109.47501 * 60.00629 * 17 16 14
46 46 H 1.09000 * 109.47050 * 69.51789 * 19 18 17
47 47 H 1.08999 * 109.46934 * 189.52290 * 19 18 17
48 48 H 1.09004 * 109.46849 * 309.51517 * 19 18 17
49 49 H 1.08996 * 109.47207 * 60.00280 * 20 18 17
50 50 H 1.08997 * 109.47059 * 179.97438 * 20 18 17
51 51 H 1.08999 * 109.46991 * 300.00053 * 20 18 17
52 52 H 0.97001 * 120.00174 * 179.97438 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9093 1.0219 0.0000
4 6 2.0662 -0.7710 -1.2252
5 7 3.2694 -1.4828 -0.7224
6 6 3.6069 -2.6217 -1.5866
7 6 4.1191 -2.1137 -2.9098
8 6 5.4702 -1.8786 -3.0837
9 6 5.9401 -1.4131 -4.2975
10 6 5.0590 -1.1834 -5.3377
11 6 3.7079 -1.4185 -5.1637
12 6 3.2380 -1.8840 -3.9499
13 6 2.8807 -1.9421 0.6359
14 6 2.0658 -0.7704 1.2243
15 1 2.7081 -0.1266 1.8253
16 7 0.9512 -1.2779 2.0356
17 6 1.3624 -1.4719 3.4324
18 6 0.1780 -2.0006 4.2440
19 6 -0.9709 -0.9918 4.1859
20 6 -0.2858 -3.3360 3.6587
21 6 0.5996 -2.1990 5.6772
22 1 1.6054 -1.9520 5.9833
23 6 -0.2987 -2.6960 6.5975
24 7 -0.0365 -2.6126 7.8835
25 14 -1.8881 -3.4879 6.0179
26 1 -1.6391 -4.9143 5.6884
27 1 -2.9068 -3.3991 7.0947
28 1 -2.3820 -2.7797 4.8096
29 1 -0.3633 -1.0276 0.0131
30 1 -0.3634 0.5251 0.8833
31 1 -0.3633 0.5024 -0.8965
32 1 2.3394 -0.0780 -2.0209
33 1 1.3238 -1.4848 -1.5822
34 1 2.7172 -3.2296 -1.7506
35 1 4.3766 -3.2263 -1.1069
36 1 6.1586 -2.0585 -2.2712
37 1 6.9950 -1.2248 -4.4319
38 1 5.4260 -0.8193 -6.2859
39 1 3.0196 -1.2394 -5.9765
40 1 2.1825 -2.0681 -3.8141
41 1 2.2649 -2.8392 0.5722
42 1 3.7671 -2.1307 1.2416
43 1 0.1519 -0.6650 1.9757
44 1 2.1806 -2.1909 3.4739
45 1 1.6932 -0.5207 3.8493
46 1 -1.3877 -0.9734 3.1789
47 1 -1.7461 -1.2828 4.8948
48 1 -0.5974 -0.0005 4.4428
49 1 0.5327 -4.0546 3.7001
50 1 -1.1293 -3.7128 4.2371
51 1 -0.5909 -3.1920 2.6222
52 1 -0.6686 -2.9619 8.5311
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000459735469.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:29:43
Heat of formation + Delta-G solvation = 50.700252 kcal
Electronic energy + Delta-G solvation = -27024.544530 eV
Core-core repulsion = 23603.375095 eV
Total energy + Delta-G solvation = -3421.169436 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 316.221 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-39.99455 -38.96457 -36.88913 -34.67900 -32.47788 -31.42397 -31.20794 -31.05942
-27.97921 -26.79481 -26.19505 -25.12542 -24.70684 -23.71111 -22.77541 -21.56540
-20.84711 -19.23586 -18.78851 -16.98173 -16.29482 -16.03764 -15.75773 -15.44539
-15.40687 -15.10292 -14.88986 -14.26730 -13.93856 -13.58879 -13.41119 -13.20411
-12.97953 -12.87536 -12.76719 -12.54524 -12.28879 -12.10957 -11.93920 -11.87119
-11.77832 -11.62405 -11.22594 -11.11370 -11.04932 -10.95325 -10.64590 -10.50096
-10.24129 -10.04934 -9.93466 -9.84902 -9.11757 -9.01275 -8.95508 -8.54044
-8.49606 -8.36020 -7.87646 -6.07374 -4.02851 1.13158 1.20843 3.32633
3.41628 3.45601 3.50406 4.06161 4.44547 4.47001 4.61641 4.65738
4.72391 4.78073 4.82956 4.91545 5.04934 5.12386 5.25741 5.30281
5.37969 5.44361 5.47062 5.53063 5.55265 5.63415 5.78439 5.80566
5.83768 5.86827 5.95369 6.06814 6.09893 6.11441 6.21589 6.24586
6.29001 6.30111 6.33123 6.42853 6.53853 6.62203 6.67068 6.76833
6.80431 6.84977 6.92466 6.94733 7.02277 7.37109 7.56318 7.59396
7.83310 7.96747 8.56179 8.97735 9.58862 11.06033
Molecular weight = 316.22amu
Principal moments of inertia in cm(-1)
A = 0.028706 B = 0.002556 C = 0.002501
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 975.167999 B =10950.319253 C =11191.968900
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.098 4.098
3 H 0.075 0.925
4 C 0.044 3.956
5 N -0.507 5.507
6 C 0.082 3.918
7 C -0.071 4.071
8 C -0.100 4.100
9 C -0.122 4.122
10 C -0.125 4.125
11 C -0.122 4.122
12 C -0.113 4.113
13 C 0.044 3.956
14 C 0.085 3.915
15 H 0.052 0.948
16 N -0.688 5.688
17 C 0.083 3.917
18 C 0.041 3.959
19 C -0.144 4.144
20 C -0.134 4.134
21 C -0.511 4.511
22 H 0.071 0.929
23 C 0.072 3.928
24 N -0.897 5.897
25 Si 0.888 3.112
26 H -0.288 1.288
27 H -0.309 1.309
28 H -0.249 1.249
29 H 0.070 0.930
30 H 0.058 0.942
31 H 0.052 0.948
32 H 0.075 0.925
33 H 0.045 0.955
34 H 0.046 0.954
35 H 0.083 0.917
36 H 0.122 0.878
37 H 0.120 0.880
38 H 0.118 0.882
39 H 0.119 0.881
40 H 0.118 0.882
41 H 0.059 0.941
42 H 0.077 0.923
43 H 0.343 0.657
44 H 0.062 0.938
45 H 0.022 0.978
46 H 0.025 0.975
47 H 0.053 0.947
48 H 0.039 0.961
49 H 0.044 0.956
50 H 0.029 0.971
51 H 0.042 0.958
52 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.522 3.506 -25.419 26.476
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.118 4.118
3 H 0.094 0.906
4 C -0.084 4.084
5 N -0.230 5.230
6 C -0.046 4.046
7 C -0.072 4.072
8 C -0.118 4.118
9 C -0.140 4.140
10 C -0.143 4.143
11 C -0.140 4.140
12 C -0.132 4.132
13 C -0.084 4.084
14 C -0.026 4.026
15 H 0.070 0.930
16 N -0.324 5.324
17 C -0.045 4.045
18 C 0.040 3.960
19 C -0.201 4.201
20 C -0.191 4.191
21 C -0.549 4.549
22 H 0.089 0.911
23 C -0.130 4.130
24 N -0.534 5.534
25 Si 0.722 3.278
26 H -0.216 1.216
27 H -0.238 1.238
28 H -0.175 1.175
29 H 0.089 0.911
30 H 0.077 0.923
31 H 0.071 0.929
32 H 0.093 0.907
33 H 0.064 0.936
34 H 0.064 0.936
35 H 0.102 0.898
36 H 0.140 0.860
37 H 0.138 0.862
38 H 0.136 0.864
39 H 0.137 0.863
40 H 0.136 0.864
41 H 0.078 0.922
42 H 0.095 0.905
43 H 0.167 0.833
44 H 0.081 0.919
45 H 0.040 0.960
46 H 0.044 0.956
47 H 0.072 0.928
48 H 0.058 0.942
49 H 0.063 0.937
50 H 0.048 0.952
51 H 0.061 0.939
52 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges 7.047 3.159 -25.369 26.518
hybrid contribution -1.406 -0.166 0.173 1.427
sum 5.641 2.993 -25.195 25.992
Atomic orbital electron populations
1.21787 0.94508 1.02937 1.01162 1.22034 0.95973 0.99259 0.94510
0.90623 1.23135 0.90921 0.97289 0.97068 1.65416 1.33407 1.22019
1.02195 1.21196 1.00270 0.92394 0.90744 1.19768 0.93651 0.99028
0.94744 1.21049 0.95089 0.98546 0.97134 1.21150 0.99647 0.99777
0.93462 1.21131 0.93609 1.00572 0.98972 1.21105 0.95692 0.99917
0.97326 1.21073 0.99341 0.99641 0.93141 1.23161 0.98656 0.97644
0.88941 1.22162 0.92821 0.93979 0.93620 0.93011 1.60874 1.07000
1.53095 1.11441 1.21999 0.98754 0.98590 0.85144 1.18463 0.91238
0.91491 0.94852 1.22301 0.99787 0.99573 0.98453 1.22154 0.99315
0.99122 0.98478 1.20865 0.99824 1.43652 0.90581 0.91109 1.24990
0.97883 0.95548 0.94544 1.69966 1.37283 1.45482 1.00708 0.87250
0.83569 0.79901 0.77122 1.21560 1.23810 1.17462 0.91073 0.92300
0.92863 0.90677 0.93635 0.93580 0.89844 0.85970 0.86206 0.86372
0.86285 0.86427 0.92233 0.90468 0.83346 0.91934 0.95975 0.95566
0.92782 0.94214 0.93685 0.95234 0.93919 0.92773
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.60 7.75 37.16 0.29 -1.31 16
2 C -0.10 -1.14 3.65 -89.24 -0.33 -1.47 16
3 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16
4 C 0.04 0.48 5.02 -2.18 -0.01 0.47 16
5 N -0.51 -5.95 5.36 -231.42 -1.24 -7.19 16
6 C 0.08 0.85 4.97 -4.98 -0.02 0.83 16
7 C -0.07 -0.72 5.10 -104.62 -0.53 -1.25 16
8 C -0.10 -0.95 9.70 -39.58 -0.38 -1.34 16
9 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16
10 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16
11 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16
12 C -0.11 -1.06 8.74 -39.58 -0.35 -1.40 16
13 C 0.04 0.58 6.19 -2.18 -0.01 0.57 16
14 C 0.09 1.17 3.38 -66.33 -0.22 0.95 16
15 H 0.05 0.77 7.82 -51.93 -0.41 0.36 16
16 N -0.69 -10.87 4.87 -105.27 -0.51 -11.38 16
17 C 0.08 1.62 4.42 -3.82 -0.02 1.60 16
18 C 0.04 0.91 0.57 -155.65 -0.09 0.82 16
19 C -0.14 -3.04 7.24 37.16 0.27 -2.77 16
20 C -0.13 -2.91 7.54 37.16 0.28 -2.63 16
21 C -0.51 -14.02 8.62 -34.44 -0.30 -14.32 16
22 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16
23 C 0.07 2.06 5.32 -17.82 -0.09 1.96 16
24 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16
25 Si 0.89 22.06 22.79 -169.99 -3.87 18.19 16
26 H -0.29 -7.15 7.10 56.52 0.40 -6.75 16
27 H -0.31 -7.82 7.11 56.52 0.40 -7.41 16
28 H -0.25 -5.71 4.65 56.52 0.26 -5.44 16
29 H 0.07 0.85 7.66 -51.93 -0.40 0.45 16
30 H 0.06 0.66 6.87 -51.93 -0.36 0.31 16
31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16
32 H 0.07 0.81 7.82 -51.93 -0.41 0.41 16
33 H 0.05 0.50 7.54 -51.93 -0.39 0.11 16
34 H 0.05 0.48 7.82 -51.93 -0.41 0.07 16
35 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16
36 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16
37 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16
38 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16
39 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16
40 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16
41 H 0.06 0.84 7.91 -51.93 -0.41 0.43 16
42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16
43 H 0.34 5.26 3.82 -39.29 -0.15 5.11 16
44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16
45 H 0.02 0.44 8.07 -51.93 -0.42 0.02 16
46 H 0.03 0.48 7.06 -51.93 -0.37 0.11 16
47 H 0.05 1.23 4.30 -51.93 -0.22 1.00 16
48 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16
49 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16
50 H 0.03 0.68 2.26 -51.93 -0.12 0.56 16
51 H 0.04 0.83 7.60 -51.93 -0.39 0.44 16
52 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16
LS Contribution 384.21 15.07 5.79 5.79
Total: -1.00 -29.58 384.21 -10.99 -40.57
By element:
Atomic # 1 Polarization: 13.42 SS G_CDS: -9.21 Total: 4.21 kcal
Atomic # 6 Polarization: -20.85 SS G_CDS: -2.72 Total: -23.57 kcal
Atomic # 7 Polarization: -44.20 SS G_CDS: -0.98 Total: -45.18 kcal
Atomic # 14 Polarization: 22.06 SS G_CDS: -3.87 Total: 18.19 kcal
Total LS contribution 5.79 Total: 5.79 kcal
Total: -29.58 -10.99 -40.57 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000459735469.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 91.267 kcal
(2) G-P(sol) polarization free energy of solvation -29.580 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.687 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.987 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal
(6) G-S(sol) free energy of system = (1) + (5) 50.700 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds