Wall clock time and date at job start Tue Mar 31 2020 11:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.36825 * 2 1 4 4 C 1.54375 * 110.32649 * 237.81649 * 2 1 3 5 5 N 1.48560 * 104.59836 * 217.25132 * 4 2 1 6 6 C 1.46892 * 111.00477 * 159.03688 * 5 4 2 7 7 C 1.50705 * 109.46861 * 69.87659 * 6 5 4 8 8 C 1.38234 * 120.00293 * 90.00323 * 7 6 5 9 9 C 1.38233 * 120.00297 * 179.97438 * 8 7 6 10 10 C 1.38238 * 119.99760 * 359.97295 * 9 8 7 11 11 C 1.38234 * 119.99942 * 0.02705 * 10 9 8 12 12 C 1.38233 * 120.00297 * 359.97295 * 11 10 9 13 13 C 1.48560 * 104.22062 * 39.47903 * 5 4 2 14 14 C 1.54260 * 110.32634 * 122.17900 * 2 1 3 15 15 H 1.09003 * 110.32355 * 237.79665 * 14 2 1 16 16 N 1.46906 * 110.32045 * 359.89647 * 14 2 1 17 17 C 1.46896 * 110.99788 * 204.99974 * 16 14 2 18 18 C 1.53005 * 109.47012 * 180.02562 * 17 16 14 19 19 C 1.53004 * 109.47186 * 300.00486 * 18 17 16 20 20 C 1.53002 * 109.46829 * 60.00211 * 18 17 16 21 21 C 1.50700 * 109.47192 * 180.02562 * 18 17 16 22 22 H 1.07995 * 120.00145 * 1.23769 * 21 18 17 23 23 C 1.37876 * 119.99824 * 181.24187 * 21 18 17 24 24 N 1.31511 * 120.00052 * 194.10921 * 23 21 18 25 25 Si 1.86801 * 120.00258 * 14.11596 * 23 21 18 26 26 H 1.48491 * 109.47528 * 84.53034 * 25 23 21 27 27 H 1.48497 * 109.47089 * 204.53553 * 25 23 21 28 28 H 1.48501 * 109.46704 * 324.52979 * 25 23 21 29 29 H 1.09003 * 109.46762 * 180.73156 * 1 2 3 30 30 H 1.08996 * 109.47586 * 300.73130 * 1 2 3 31 31 H 1.08997 * 109.47251 * 60.73404 * 1 2 3 32 32 H 1.09001 * 110.41729 * 98.46964 * 4 2 1 33 33 H 1.08996 * 110.51207 * 336.07950 * 4 2 1 34 34 H 1.08993 * 109.47573 * 309.87643 * 6 5 4 35 35 H 1.09000 * 109.47580 * 189.87454 * 6 5 4 36 36 H 1.08003 * 119.99703 * 359.97438 * 8 7 6 37 37 H 1.07992 * 119.99938 * 179.69847 * 9 8 7 38 38 H 1.07998 * 120.00025 * 179.97438 * 10 9 8 39 39 H 1.08007 * 119.99756 * 180.02562 * 11 10 9 40 40 H 1.08000 * 120.00381 * 180.02562 * 12 11 10 41 41 H 1.09002 * 110.41173 * 79.30130 * 13 5 4 42 42 H 1.09001 * 110.41253 * 201.73884 * 13 5 4 43 43 H 1.00897 * 111.00329 * 328.95810 * 16 14 2 44 44 H 1.08996 * 109.47536 * 300.00156 * 17 16 14 45 45 H 1.08998 * 109.47501 * 60.00629 * 17 16 14 46 46 H 1.09000 * 109.47050 * 69.51789 * 19 18 17 47 47 H 1.08999 * 109.46934 * 189.52290 * 19 18 17 48 48 H 1.09004 * 109.46849 * 309.51517 * 19 18 17 49 49 H 1.08996 * 109.47207 * 60.00280 * 20 18 17 50 50 H 1.08997 * 109.47059 * 179.97438 * 20 18 17 51 51 H 1.08999 * 109.46991 * 300.00053 * 20 18 17 52 52 H 0.97001 * 120.00174 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0662 -0.7710 -1.2252 5 7 3.2694 -1.4828 -0.7224 6 6 3.6069 -2.6217 -1.5866 7 6 4.1191 -2.1137 -2.9098 8 6 5.4702 -1.8786 -3.0837 9 6 5.9401 -1.4131 -4.2975 10 6 5.0590 -1.1834 -5.3377 11 6 3.7079 -1.4185 -5.1637 12 6 3.2380 -1.8840 -3.9499 13 6 2.8807 -1.9421 0.6359 14 6 2.0658 -0.7704 1.2243 15 1 2.7081 -0.1266 1.8253 16 7 0.9512 -1.2779 2.0356 17 6 1.3624 -1.4719 3.4324 18 6 0.1780 -2.0006 4.2440 19 6 -0.9709 -0.9918 4.1859 20 6 -0.2858 -3.3360 3.6587 21 6 0.5996 -2.1990 5.6772 22 1 1.6054 -1.9520 5.9833 23 6 -0.2987 -2.6960 6.5975 24 7 -0.0365 -2.6126 7.8835 25 14 -1.8881 -3.4879 6.0179 26 1 -1.6391 -4.9143 5.6884 27 1 -2.9068 -3.3991 7.0947 28 1 -2.3820 -2.7797 4.8096 29 1 -0.3633 -1.0276 0.0131 30 1 -0.3634 0.5251 0.8833 31 1 -0.3633 0.5024 -0.8965 32 1 2.3394 -0.0780 -2.0209 33 1 1.3238 -1.4848 -1.5822 34 1 2.7172 -3.2296 -1.7506 35 1 4.3766 -3.2263 -1.1069 36 1 6.1586 -2.0585 -2.2712 37 1 6.9950 -1.2248 -4.4319 38 1 5.4260 -0.8193 -6.2859 39 1 3.0196 -1.2394 -5.9765 40 1 2.1825 -2.0681 -3.8141 41 1 2.2649 -2.8392 0.5722 42 1 3.7671 -2.1307 1.2416 43 1 0.1519 -0.6650 1.9757 44 1 2.1806 -2.1909 3.4739 45 1 1.6932 -0.5207 3.8493 46 1 -1.3877 -0.9734 3.1789 47 1 -1.7461 -1.2828 4.8948 48 1 -0.5974 -0.0005 4.4428 49 1 0.5327 -4.0546 3.7001 50 1 -1.1293 -3.7128 4.2371 51 1 -0.5909 -3.1920 2.6222 52 1 -0.6686 -2.9619 8.5311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459735469.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:43 Heat of formation + Delta-G solvation = 50.700252 kcal Electronic energy + Delta-G solvation = -27024.544530 eV Core-core repulsion = 23603.375095 eV Total energy + Delta-G solvation = -3421.169436 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.99455 -38.96457 -36.88913 -34.67900 -32.47788 -31.42397 -31.20794 -31.05942 -27.97921 -26.79481 -26.19505 -25.12542 -24.70684 -23.71111 -22.77541 -21.56540 -20.84711 -19.23586 -18.78851 -16.98173 -16.29482 -16.03764 -15.75773 -15.44539 -15.40687 -15.10292 -14.88986 -14.26730 -13.93856 -13.58879 -13.41119 -13.20411 -12.97953 -12.87536 -12.76719 -12.54524 -12.28879 -12.10957 -11.93920 -11.87119 -11.77832 -11.62405 -11.22594 -11.11370 -11.04932 -10.95325 -10.64590 -10.50096 -10.24129 -10.04934 -9.93466 -9.84902 -9.11757 -9.01275 -8.95508 -8.54044 -8.49606 -8.36020 -7.87646 -6.07374 -4.02851 1.13158 1.20843 3.32633 3.41628 3.45601 3.50406 4.06161 4.44547 4.47001 4.61641 4.65738 4.72391 4.78073 4.82956 4.91545 5.04934 5.12386 5.25741 5.30281 5.37969 5.44361 5.47062 5.53063 5.55265 5.63415 5.78439 5.80566 5.83768 5.86827 5.95369 6.06814 6.09893 6.11441 6.21589 6.24586 6.29001 6.30111 6.33123 6.42853 6.53853 6.62203 6.67068 6.76833 6.80431 6.84977 6.92466 6.94733 7.02277 7.37109 7.56318 7.59396 7.83310 7.96747 8.56179 8.97735 9.58862 11.06033 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028706 B = 0.002556 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.167999 B =10950.319253 C =11191.968900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.075 0.925 4 C 0.044 3.956 5 N -0.507 5.507 6 C 0.082 3.918 7 C -0.071 4.071 8 C -0.100 4.100 9 C -0.122 4.122 10 C -0.125 4.125 11 C -0.122 4.122 12 C -0.113 4.113 13 C 0.044 3.956 14 C 0.085 3.915 15 H 0.052 0.948 16 N -0.688 5.688 17 C 0.083 3.917 18 C 0.041 3.959 19 C -0.144 4.144 20 C -0.134 4.134 21 C -0.511 4.511 22 H 0.071 0.929 23 C 0.072 3.928 24 N -0.897 5.897 25 Si 0.888 3.112 26 H -0.288 1.288 27 H -0.309 1.309 28 H -0.249 1.249 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.343 0.657 44 H 0.062 0.938 45 H 0.022 0.978 46 H 0.025 0.975 47 H 0.053 0.947 48 H 0.039 0.961 49 H 0.044 0.956 50 H 0.029 0.971 51 H 0.042 0.958 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.522 3.506 -25.419 26.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.094 0.906 4 C -0.084 4.084 5 N -0.230 5.230 6 C -0.046 4.046 7 C -0.072 4.072 8 C -0.118 4.118 9 C -0.140 4.140 10 C -0.143 4.143 11 C -0.140 4.140 12 C -0.132 4.132 13 C -0.084 4.084 14 C -0.026 4.026 15 H 0.070 0.930 16 N -0.324 5.324 17 C -0.045 4.045 18 C 0.040 3.960 19 C -0.201 4.201 20 C -0.191 4.191 21 C -0.549 4.549 22 H 0.089 0.911 23 C -0.130 4.130 24 N -0.534 5.534 25 Si 0.722 3.278 26 H -0.216 1.216 27 H -0.238 1.238 28 H -0.175 1.175 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.078 0.922 42 H 0.095 0.905 43 H 0.167 0.833 44 H 0.081 0.919 45 H 0.040 0.960 46 H 0.044 0.956 47 H 0.072 0.928 48 H 0.058 0.942 49 H 0.063 0.937 50 H 0.048 0.952 51 H 0.061 0.939 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.047 3.159 -25.369 26.518 hybrid contribution -1.406 -0.166 0.173 1.427 sum 5.641 2.993 -25.195 25.992 Atomic orbital electron populations 1.21787 0.94508 1.02937 1.01162 1.22034 0.95973 0.99259 0.94510 0.90623 1.23135 0.90921 0.97289 0.97068 1.65416 1.33407 1.22019 1.02195 1.21196 1.00270 0.92394 0.90744 1.19768 0.93651 0.99028 0.94744 1.21049 0.95089 0.98546 0.97134 1.21150 0.99647 0.99777 0.93462 1.21131 0.93609 1.00572 0.98972 1.21105 0.95692 0.99917 0.97326 1.21073 0.99341 0.99641 0.93141 1.23161 0.98656 0.97644 0.88941 1.22162 0.92821 0.93979 0.93620 0.93011 1.60874 1.07000 1.53095 1.11441 1.21999 0.98754 0.98590 0.85144 1.18463 0.91238 0.91491 0.94852 1.22301 0.99787 0.99573 0.98453 1.22154 0.99315 0.99122 0.98478 1.20865 0.99824 1.43652 0.90581 0.91109 1.24990 0.97883 0.95548 0.94544 1.69966 1.37283 1.45482 1.00708 0.87250 0.83569 0.79901 0.77122 1.21560 1.23810 1.17462 0.91073 0.92300 0.92863 0.90677 0.93635 0.93580 0.89844 0.85970 0.86206 0.86372 0.86285 0.86427 0.92233 0.90468 0.83346 0.91934 0.95975 0.95566 0.92782 0.94214 0.93685 0.95234 0.93919 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 7.75 37.16 0.29 -1.31 16 2 C -0.10 -1.14 3.65 -89.24 -0.33 -1.47 16 3 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 4 C 0.04 0.48 5.02 -2.18 -0.01 0.47 16 5 N -0.51 -5.95 5.36 -231.42 -1.24 -7.19 16 6 C 0.08 0.85 4.97 -4.98 -0.02 0.83 16 7 C -0.07 -0.72 5.10 -104.62 -0.53 -1.25 16 8 C -0.10 -0.95 9.70 -39.58 -0.38 -1.34 16 9 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 10 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 11 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 12 C -0.11 -1.06 8.74 -39.58 -0.35 -1.40 16 13 C 0.04 0.58 6.19 -2.18 -0.01 0.57 16 14 C 0.09 1.17 3.38 -66.33 -0.22 0.95 16 15 H 0.05 0.77 7.82 -51.93 -0.41 0.36 16 16 N -0.69 -10.87 4.87 -105.27 -0.51 -11.38 16 17 C 0.08 1.62 4.42 -3.82 -0.02 1.60 16 18 C 0.04 0.91 0.57 -155.65 -0.09 0.82 16 19 C -0.14 -3.04 7.24 37.16 0.27 -2.77 16 20 C -0.13 -2.91 7.54 37.16 0.28 -2.63 16 21 C -0.51 -14.02 8.62 -34.44 -0.30 -14.32 16 22 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 23 C 0.07 2.06 5.32 -17.82 -0.09 1.96 16 24 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 25 Si 0.89 22.06 22.79 -169.99 -3.87 18.19 16 26 H -0.29 -7.15 7.10 56.52 0.40 -6.75 16 27 H -0.31 -7.82 7.11 56.52 0.40 -7.41 16 28 H -0.25 -5.71 4.65 56.52 0.26 -5.44 16 29 H 0.07 0.85 7.66 -51.93 -0.40 0.45 16 30 H 0.06 0.66 6.87 -51.93 -0.36 0.31 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.81 7.82 -51.93 -0.41 0.41 16 33 H 0.05 0.50 7.54 -51.93 -0.39 0.11 16 34 H 0.05 0.48 7.82 -51.93 -0.41 0.07 16 35 H 0.08 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 38 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 39 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 40 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.06 0.84 7.91 -51.93 -0.41 0.43 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.34 5.26 3.82 -39.29 -0.15 5.11 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.02 0.44 8.07 -51.93 -0.42 0.02 16 46 H 0.03 0.48 7.06 -51.93 -0.37 0.11 16 47 H 0.05 1.23 4.30 -51.93 -0.22 1.00 16 48 H 0.04 0.81 8.12 -51.93 -0.42 0.39 16 49 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.03 0.68 2.26 -51.93 -0.12 0.56 16 51 H 0.04 0.83 7.60 -51.93 -0.39 0.44 16 52 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 384.21 15.07 5.79 5.79 Total: -1.00 -29.58 384.21 -10.99 -40.57 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -9.21 Total: 4.21 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -2.72 Total: -23.57 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: -0.98 Total: -45.18 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -3.87 Total: 18.19 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.58 -10.99 -40.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459735469.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.267 kcal (2) G-P(sol) polarization free energy of solvation -29.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds