Wall clock time and date at job start Tue Mar 31 2020 11:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.36825 * 2 1 4 4 C 1.54375 * 110.32649 * 237.81649 * 2 1 3 5 5 N 1.48560 * 104.59836 * 217.25132 * 4 2 1 6 6 C 1.46892 * 111.00477 * 159.03688 * 5 4 2 7 7 C 1.50705 * 109.46861 * 69.87659 * 6 5 4 8 8 C 1.38234 * 120.00293 * 90.00323 * 7 6 5 9 9 C 1.38233 * 120.00297 * 179.97438 * 8 7 6 10 10 C 1.38238 * 119.99760 * 359.97295 * 9 8 7 11 11 C 1.38234 * 119.99942 * 0.02705 * 10 9 8 12 12 C 1.38233 * 120.00297 * 359.97295 * 11 10 9 13 13 C 1.48560 * 104.22062 * 39.47903 * 5 4 2 14 14 C 1.54260 * 110.32634 * 122.17900 * 2 1 3 15 15 H 1.09003 * 110.32355 * 237.79665 * 14 2 1 16 16 N 1.46906 * 110.32045 * 359.89647 * 14 2 1 17 17 C 1.46896 * 110.99788 * 204.99974 * 16 14 2 18 18 C 1.53005 * 109.47012 * 180.02562 * 17 16 14 19 19 C 1.53004 * 109.47186 * 300.00486 * 18 17 16 20 20 C 1.53002 * 109.46829 * 60.00211 * 18 17 16 21 21 C 1.50700 * 109.47192 * 180.02562 * 18 17 16 22 22 H 1.07995 * 120.00145 * 1.23769 * 21 18 17 23 23 C 1.37876 * 119.99824 * 181.24187 * 21 18 17 24 24 N 1.31511 * 120.00052 * 194.10921 * 23 21 18 25 25 Si 1.86801 * 120.00258 * 14.11596 * 23 21 18 26 26 H 1.48491 * 109.47528 * 84.53034 * 25 23 21 27 27 H 1.48497 * 109.47089 * 204.53553 * 25 23 21 28 28 H 1.48501 * 109.46704 * 324.52979 * 25 23 21 29 29 H 1.09003 * 109.46762 * 180.73156 * 1 2 3 30 30 H 1.08996 * 109.47586 * 300.73130 * 1 2 3 31 31 H 1.08997 * 109.47251 * 60.73404 * 1 2 3 32 32 H 1.09001 * 110.41729 * 98.46964 * 4 2 1 33 33 H 1.08996 * 110.51207 * 336.07950 * 4 2 1 34 34 H 1.08993 * 109.47573 * 309.87643 * 6 5 4 35 35 H 1.09000 * 109.47580 * 189.87454 * 6 5 4 36 36 H 1.08003 * 119.99703 * 359.97438 * 8 7 6 37 37 H 1.07992 * 119.99938 * 179.69847 * 9 8 7 38 38 H 1.07998 * 120.00025 * 179.97438 * 10 9 8 39 39 H 1.08007 * 119.99756 * 180.02562 * 11 10 9 40 40 H 1.08000 * 120.00381 * 180.02562 * 12 11 10 41 41 H 1.09002 * 110.41173 * 79.30130 * 13 5 4 42 42 H 1.09001 * 110.41253 * 201.73884 * 13 5 4 43 43 H 1.00897 * 111.00329 * 328.95810 * 16 14 2 44 44 H 1.08996 * 109.47536 * 300.00156 * 17 16 14 45 45 H 1.08998 * 109.47501 * 60.00629 * 17 16 14 46 46 H 1.09000 * 109.47050 * 69.51789 * 19 18 17 47 47 H 1.08999 * 109.46934 * 189.52290 * 19 18 17 48 48 H 1.09004 * 109.46849 * 309.51517 * 19 18 17 49 49 H 1.08996 * 109.47207 * 60.00280 * 20 18 17 50 50 H 1.08997 * 109.47059 * 179.97438 * 20 18 17 51 51 H 1.08999 * 109.46991 * 300.00053 * 20 18 17 52 52 H 0.97001 * 120.00174 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0662 -0.7710 -1.2252 5 7 3.2694 -1.4828 -0.7224 6 6 3.6069 -2.6217 -1.5866 7 6 4.1191 -2.1137 -2.9098 8 6 5.4702 -1.8786 -3.0837 9 6 5.9401 -1.4131 -4.2975 10 6 5.0590 -1.1834 -5.3377 11 6 3.7079 -1.4185 -5.1637 12 6 3.2380 -1.8840 -3.9499 13 6 2.8807 -1.9421 0.6359 14 6 2.0658 -0.7704 1.2243 15 1 2.7081 -0.1266 1.8253 16 7 0.9512 -1.2779 2.0356 17 6 1.3624 -1.4719 3.4324 18 6 0.1780 -2.0006 4.2440 19 6 -0.9709 -0.9918 4.1859 20 6 -0.2858 -3.3360 3.6587 21 6 0.5996 -2.1990 5.6772 22 1 1.6054 -1.9520 5.9833 23 6 -0.2987 -2.6960 6.5975 24 7 -0.0365 -2.6126 7.8835 25 14 -1.8881 -3.4879 6.0179 26 1 -1.6391 -4.9143 5.6884 27 1 -2.9068 -3.3991 7.0947 28 1 -2.3820 -2.7797 4.8096 29 1 -0.3633 -1.0276 0.0131 30 1 -0.3634 0.5251 0.8833 31 1 -0.3633 0.5024 -0.8965 32 1 2.3394 -0.0780 -2.0209 33 1 1.3238 -1.4848 -1.5822 34 1 2.7172 -3.2296 -1.7506 35 1 4.3766 -3.2263 -1.1069 36 1 6.1586 -2.0585 -2.2712 37 1 6.9950 -1.2248 -4.4319 38 1 5.4260 -0.8193 -6.2859 39 1 3.0196 -1.2394 -5.9765 40 1 2.1825 -2.0681 -3.8141 41 1 2.2649 -2.8392 0.5722 42 1 3.7671 -2.1307 1.2416 43 1 0.1519 -0.6650 1.9757 44 1 2.1806 -2.1909 3.4739 45 1 1.6932 -0.5207 3.8493 46 1 -1.3877 -0.9734 3.1789 47 1 -1.7461 -1.2828 4.8948 48 1 -0.5974 -0.0005 4.4428 49 1 0.5327 -4.0546 3.7001 50 1 -1.1293 -3.7128 4.2371 51 1 -0.5909 -3.1920 2.6222 52 1 -0.6686 -2.9619 8.5311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459735469.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:42 Heat of formation + Delta-G solvation = 32.955931 kcal Electronic energy + Delta-G solvation = -27025.313982 eV Core-core repulsion = 23603.375095 eV Total energy + Delta-G solvation = -3421.938887 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.89099 -39.81907 -38.44170 -35.85560 -34.12301 -32.81528 -32.19010 -31.73230 -29.05149 -27.91699 -27.72716 -27.04397 -25.94188 -25.00745 -23.42903 -22.42107 -21.67671 -20.59728 -20.29730 -18.06013 -17.65574 -17.42852 -17.13986 -16.60940 -16.32322 -16.13505 -15.96232 -15.23221 -14.96215 -14.85518 -14.69464 -14.53249 -14.43640 -14.20675 -13.79472 -13.69060 -13.65942 -13.34482 -13.26339 -13.10671 -12.88818 -12.70101 -12.39157 -12.28109 -12.13606 -11.92538 -11.84883 -11.76057 -11.71647 -11.65209 -11.50342 -11.47569 -10.92315 -10.56540 -10.29626 -9.77567 -9.71887 -9.37908 -9.23589 -8.28812 -6.27638 0.46541 0.55743 1.36505 1.38388 1.49984 2.35933 2.76666 3.08085 3.15754 3.55291 3.58164 3.71057 3.91065 3.98487 4.11521 4.21451 4.27210 4.31443 4.36836 4.37831 4.43852 4.56748 4.58160 4.59993 4.64355 4.69631 4.79032 4.80555 4.81059 4.88167 4.90131 4.93888 4.94895 5.03718 5.08171 5.14358 5.16704 5.20715 5.21222 5.25666 5.30686 5.43385 5.58061 5.60809 5.66972 5.71989 5.76157 5.85405 5.87028 6.03544 6.17362 6.24431 6.36517 6.62298 6.79890 7.37418 8.88448 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028706 B = 0.002556 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.167999 B =10950.319253 C =11191.968900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.093 4.093 3 H 0.080 0.920 4 C 0.050 3.950 5 N -0.511 5.511 6 C 0.085 3.915 7 C -0.085 4.085 8 C -0.115 4.115 9 C -0.129 4.129 10 C -0.129 4.129 11 C -0.128 4.128 12 C -0.122 4.122 13 C 0.049 3.951 14 C 0.083 3.917 15 H 0.039 0.961 16 N -0.677 5.677 17 C 0.098 3.902 18 C 0.036 3.964 19 C -0.141 4.141 20 C -0.130 4.130 21 C -0.512 4.512 22 H 0.027 0.973 23 C 0.015 3.985 24 N -0.949 5.949 25 Si 0.945 3.055 26 H -0.287 1.287 27 H -0.317 1.317 28 H -0.211 1.211 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.082 0.918 36 H 0.123 0.877 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.125 0.875 41 H 0.051 0.949 42 H 0.068 0.932 43 H 0.349 0.651 44 H 0.049 0.951 45 H 0.008 0.992 46 H 0.062 0.938 47 H 0.039 0.961 48 H 0.039 0.961 49 H 0.037 0.963 50 H 0.021 0.979 51 H 0.071 0.929 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.238 3.979 -29.122 29.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.098 0.902 4 C -0.078 4.078 5 N -0.235 5.235 6 C -0.043 4.043 7 C -0.086 4.086 8 C -0.134 4.134 9 C -0.147 4.147 10 C -0.147 4.147 11 C -0.145 4.145 12 C -0.141 4.141 13 C -0.079 4.079 14 C -0.028 4.028 15 H 0.057 0.943 16 N -0.314 5.314 17 C -0.031 4.031 18 C 0.035 3.965 19 C -0.198 4.198 20 C -0.186 4.186 21 C -0.550 4.550 22 H 0.045 0.955 23 C -0.182 4.182 24 N -0.589 5.589 25 Si 0.775 3.225 26 H -0.214 1.214 27 H -0.247 1.247 28 H -0.135 1.135 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.141 0.859 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.142 0.858 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.173 0.827 44 H 0.068 0.932 45 H 0.027 0.973 46 H 0.080 0.920 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.056 0.944 50 H 0.040 0.960 51 H 0.090 0.910 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.769 3.645 -29.115 29.904 hybrid contribution -0.840 -0.260 1.291 1.562 sum 4.929 3.384 -27.824 28.459 Atomic orbital electron populations 1.21754 0.93523 1.02701 1.02101 1.22019 0.96747 0.99135 0.93332 0.90155 1.23104 0.90617 0.97247 0.96783 1.65408 1.33795 1.22606 1.01707 1.21173 1.00255 0.91954 0.90902 1.19782 0.94074 1.00034 0.94691 1.21201 0.95146 0.99182 0.97856 1.21418 1.00788 0.99344 0.93177 1.21464 0.93569 0.99883 0.99742 1.21404 0.96315 0.99278 0.97543 1.21222 0.99645 0.99818 0.93372 1.23020 0.98004 0.97013 0.89866 1.22194 0.92152 0.94378 0.94101 0.94268 1.60807 1.07841 1.53673 1.09065 1.21656 0.97126 0.97391 0.86943 1.18462 0.92962 0.92941 0.92155 1.22210 0.98598 0.98868 1.00164 1.22082 0.98698 0.97971 0.99875 1.21212 0.97867 1.42357 0.93564 0.95468 1.25823 1.01776 0.96216 0.94402 1.70115 1.39020 1.47511 1.02228 0.86326 0.79287 0.79069 0.77780 1.21421 1.24677 1.13472 0.91760 0.92498 0.90855 0.90105 0.93156 0.93496 0.89999 0.85926 0.84535 0.84195 0.84307 0.85750 0.93065 0.91374 0.82653 0.93214 0.97346 0.91961 0.94213 0.94203 0.94398 0.96040 0.91019 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 7.75 71.98 0.56 -2.09 16 2 C -0.09 -1.94 3.65 -9.90 -0.04 -1.98 16 3 H 0.08 1.63 8.14 -2.39 -0.02 1.62 16 4 C 0.05 0.99 5.02 86.45 0.43 1.43 16 5 N -0.51 -11.40 5.36 -886.09 -4.75 -16.15 16 6 C 0.08 1.69 4.97 85.56 0.42 2.11 16 7 C -0.09 -1.61 5.10 -19.86 -0.10 -1.71 16 8 C -0.12 -2.09 9.70 22.27 0.22 -1.88 16 9 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 10 C -0.13 -1.79 10.05 22.27 0.22 -1.56 16 11 C -0.13 -1.84 10.05 22.27 0.22 -1.61 16 12 C -0.12 -2.04 8.74 22.27 0.19 -1.84 16 13 C 0.05 1.27 6.19 86.45 0.53 1.80 16 14 C 0.08 2.17 3.38 45.81 0.15 2.33 16 15 H 0.04 1.15 7.82 -2.39 -0.02 1.13 16 16 N -0.68 -20.18 4.87 -486.95 -2.37 -22.55 16 17 C 0.10 3.77 4.42 86.31 0.38 4.15 16 18 C 0.04 1.57 0.57 -52.92 -0.03 1.54 16 19 C -0.14 -5.61 7.24 71.98 0.52 -5.09 16 20 C -0.13 -5.32 7.54 71.98 0.54 -4.78 16 21 C -0.51 -28.77 8.62 25.60 0.22 -28.55 16 22 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 23 C 0.01 0.85 5.32 84.65 0.45 1.30 16 24 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 25 Si 0.94 45.15 22.79 68.60 1.56 46.71 16 26 H -0.29 -13.55 7.10 99.48 0.71 -12.84 16 27 H -0.32 -15.48 7.11 99.48 0.71 -14.77 16 28 H -0.21 -8.78 4.65 99.48 0.46 -8.32 16 29 H 0.06 1.30 7.66 -2.39 -0.02 1.28 16 30 H 0.06 1.09 6.87 -2.39 -0.02 1.07 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.54 7.82 -2.39 -0.02 1.52 16 33 H 0.05 0.96 7.54 -2.39 -0.02 0.94 16 34 H 0.05 0.92 7.82 -2.39 -0.02 0.90 16 35 H 0.08 1.61 8.07 -2.39 -0.02 1.59 16 36 H 0.12 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 38 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 39 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 40 H 0.12 1.83 8.06 -2.91 -0.02 1.80 16 41 H 0.05 1.40 7.91 -2.39 -0.02 1.38 16 42 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.35 9.69 3.82 -89.70 -0.34 9.35 16 44 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.01 0.34 8.07 -2.39 -0.02 0.32 16 46 H 0.06 2.02 7.06 -2.39 -0.02 2.01 16 47 H 0.04 1.69 4.30 -2.39 -0.01 1.68 16 48 H 0.04 1.55 8.12 -2.38 -0.02 1.53 16 49 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.02 0.92 2.26 -2.39 -0.01 0.91 16 51 H 0.07 2.52 7.60 -2.39 -0.02 2.51 16 52 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -65.21 384.21 0.17 -65.04 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.29 Total: 24.82 kcal Atomic # 6 Polarization: -43.33 SS G_CDS: 5.14 Total: -38.19 kcal Atomic # 7 Polarization: -91.56 SS G_CDS: -6.82 Total: -98.38 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.56 Total: 46.71 kcal Total: -65.21 0.17 -65.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459735469.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.995 kcal (2) G-P(sol) polarization free energy of solvation -65.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds