Wall clock time and date at job start Tue Mar 31 2020 11:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 H 1.09000 * 109.49282 * 305.00345 * 4 2 1 6 6 C 1.53051 * 109.48827 * 65.04195 * 4 2 1 7 7 N 1.46955 * 109.37028 * 178.36788 * 6 4 2 8 8 C 1.46899 * 111.00490 * 176.81321 * 7 6 4 9 9 C 1.50702 * 109.47286 * 190.00146 * 8 7 6 10 10 C 1.38232 * 120.00003 * 269.72746 * 9 8 7 11 11 C 1.38234 * 119.99915 * 179.81046 * 10 9 8 12 12 C 1.38242 * 119.99568 * 0.41532 * 11 10 9 13 13 C 1.38226 * 120.00368 * 359.81702 * 12 11 10 14 14 C 1.38236 * 120.00132 * 359.97438 * 13 12 11 15 15 C 1.46955 * 110.88151 * 300.68769 * 7 6 4 16 16 C 1.53051 * 109.36750 * 59.31067 * 15 7 6 17 17 N 1.46948 * 109.49341 * 184.95648 * 4 2 1 18 18 C 1.46900 * 111.00124 * 56.84748 * 17 4 2 19 19 C 1.53003 * 109.47486 * 170.00167 * 18 17 4 20 20 C 1.50702 * 109.47005 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00225 * 359.97438 * 20 19 18 22 22 C 1.37877 * 119.99850 * 179.97438 * 20 19 18 23 23 N 1.31515 * 119.99986 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00186 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46896 * 89.99862 * 24 22 20 26 26 H 1.48497 * 109.47209 * 209.99957 * 24 22 20 27 27 H 1.48501 * 109.46894 * 330.00339 * 24 22 20 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.09004 * 109.49030 * 298.34302 * 6 4 2 36 36 H 1.09005 * 109.48497 * 58.40447 * 6 4 2 37 37 H 1.09001 * 109.46945 * 310.00226 * 8 7 6 38 38 H 1.09002 * 109.46829 * 70.00317 * 8 7 6 39 39 H 1.07999 * 120.00070 * 0.02562 * 10 9 8 40 40 H 1.07999 * 120.00415 * 180.21315 * 11 10 9 41 41 H 1.08004 * 119.99647 * 179.78736 * 12 11 10 42 42 H 1.07998 * 120.00022 * 179.97438 * 13 12 11 43 43 H 1.08002 * 120.00215 * 179.97438 * 14 13 12 44 44 H 1.09001 * 109.49233 * 179.28576 * 15 7 6 45 45 H 1.09006 * 109.48882 * 299.35003 * 15 7 6 46 46 H 1.09005 * 109.48497 * 61.56912 * 16 15 7 47 47 H 1.09002 * 109.49171 * 181.61054 * 16 15 7 48 48 H 1.09004 * 109.47133 * 290.00368 * 18 17 4 49 49 H 1.09001 * 109.46958 * 49.99903 * 18 17 4 50 50 H 1.09006 * 109.46679 * 299.99903 * 19 18 17 51 51 H 1.08992 * 109.47023 * 59.99850 * 19 18 17 52 52 H 0.96995 * 119.99836 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6056 -1.7199 -1.2955 6 6 1.6363 0.0694 -2.4959 7 7 2.1609 -0.6048 -3.6917 8 6 1.7299 0.0834 -4.9159 9 6 2.0734 -0.7622 -6.1150 10 6 3.2958 -0.6085 -6.7419 11 6 3.6124 -1.3870 -7.8395 12 6 2.7030 -2.3131 -8.3154 13 6 1.4788 -2.4634 -7.6915 14 6 1.1639 -1.6880 -6.5912 15 6 3.6255 -0.7092 -3.6340 16 6 4.0293 -1.4998 -2.3873 17 7 3.5046 -0.8260 -1.1913 18 6 3.9352 -1.5146 0.0328 19 6 5.4305 -1.8263 -0.0563 20 6 5.8720 -2.5332 1.1993 21 1 5.1576 -2.7392 1.9826 22 6 7.1879 -2.9170 1.3479 23 7 8.0576 -2.6666 0.3937 24 14 7.7353 -3.7927 2.9045 25 1 7.5870 -5.2594 2.7255 26 1 9.1581 -3.4690 3.1802 27 1 6.8959 -3.3458 4.0450 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 0.5492 0.1232 -2.5562 36 1 2.0478 1.0770 -2.4366 37 1 0.6525 0.2449 -4.8817 38 1 2.2392 1.0442 -4.9909 39 1 4.0048 0.1173 -6.3720 40 1 4.5688 -1.2694 -8.3272 41 1 2.9490 -2.9189 -9.1750 42 1 0.7683 -3.1866 -8.0635 43 1 0.2071 -1.8051 -6.1040 44 1 3.9889 -1.2230 -4.5240 45 1 4.0598 0.2896 -3.5875 46 1 3.6177 -2.5074 -2.4466 47 1 5.1163 -1.5540 -2.3272 48 1 3.7483 -0.8742 0.8948 49 1 3.3762 -2.4439 0.1427 50 1 5.6173 -2.4668 -0.9183 51 1 5.9894 -0.8970 -0.1662 52 1 8.9834 -2.9363 0.4985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528612250.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:02 Heat of formation + Delta-G solvation = 25.393836 kcal Electronic energy + Delta-G solvation = -27309.439455 eV Core-core repulsion = 23887.172651 eV Total energy + Delta-G solvation = -3422.266804 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.95928 -39.00622 -36.06873 -34.90339 -32.90231 -31.75098 -30.99671 -29.63834 -29.32062 -27.08556 -26.87431 -24.63734 -24.11928 -23.11271 -22.59907 -21.30471 -20.43820 -19.99202 -18.43958 -16.83031 -16.62826 -15.83767 -15.60268 -15.36293 -14.85611 -14.80513 -14.45258 -14.22399 -14.12213 -13.83177 -13.64727 -13.48725 -13.06303 -12.91529 -12.67039 -12.56450 -12.47069 -12.02743 -11.87996 -11.72364 -11.55084 -11.19920 -11.05482 -11.01403 -10.93793 -10.92915 -10.79451 -10.68152 -10.49420 -10.23151 -10.02771 -9.73590 -9.26950 -9.05514 -8.96961 -8.84996 -8.32789 -8.19563 -7.61152 -5.99094 -4.00996 1.25553 1.33762 3.32678 3.38922 3.42256 3.61194 4.17420 4.38025 4.53366 4.66923 4.76622 4.92479 4.96051 5.02115 5.09342 5.21072 5.28085 5.37121 5.39431 5.40443 5.43735 5.46966 5.57195 5.65997 5.69178 5.74240 5.79687 5.83382 5.91996 5.96195 5.98849 6.03981 6.08022 6.17437 6.29702 6.32938 6.37707 6.43072 6.43845 6.50632 6.55092 6.55860 6.59279 6.66957 6.91604 6.98904 7.10904 7.17852 7.56912 7.66360 7.83756 7.88441 8.07164 8.45064 9.05646 9.62639 11.12280 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011423 B = 0.003482 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.669836 B = 8038.564169 C = 9910.782132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 C -0.139 4.139 4 C 0.093 3.907 5 H 0.041 0.959 6 C 0.063 3.937 7 N -0.535 5.535 8 C 0.093 3.907 9 C -0.073 4.073 10 C -0.113 4.113 11 C -0.121 4.121 12 C -0.124 4.124 13 C -0.123 4.123 14 C -0.100 4.100 15 C 0.056 3.944 16 C 0.057 3.943 17 N -0.533 5.533 18 C 0.063 3.937 19 C 0.022 3.978 20 C -0.520 4.520 21 H 0.053 0.947 22 C 0.059 3.941 23 N -0.894 5.894 24 Si 0.891 3.109 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.274 1.274 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.041 0.959 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.077 0.923 45 H 0.039 0.961 46 H 0.034 0.966 47 H 0.096 0.904 48 H 0.064 0.936 49 H 0.018 0.982 50 H 0.019 0.981 51 H 0.023 0.977 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.367 6.216 -14.046 21.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 C -0.196 4.196 4 C -0.016 4.016 5 H 0.059 0.941 6 C -0.065 4.065 7 N -0.259 5.259 8 C -0.034 4.034 9 C -0.073 4.073 10 C -0.131 4.131 11 C -0.139 4.139 12 C -0.142 4.142 13 C -0.141 4.141 14 C -0.118 4.118 15 C -0.071 4.071 16 C -0.072 4.072 17 N -0.258 5.258 18 C -0.063 4.063 19 C -0.015 4.015 20 C -0.559 4.559 21 H 0.072 0.928 22 C -0.143 4.143 23 N -0.533 5.533 24 Si 0.719 3.281 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.199 1.199 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.059 0.941 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.095 0.905 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.114 0.886 48 H 0.082 0.918 49 H 0.036 0.964 50 H 0.037 0.963 51 H 0.042 0.958 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.178 6.208 -14.076 21.611 hybrid contribution 0.446 -0.659 0.831 1.151 sum -14.732 5.549 -13.245 20.573 Atomic orbital electron populations 1.21870 0.95642 1.01438 1.01364 1.21159 0.94676 0.97206 0.98073 1.21777 1.02673 0.94961 1.00209 1.21611 0.89254 0.97386 0.93344 0.94070 1.22301 0.98940 0.96289 0.88936 1.62170 1.11407 1.51377 1.00996 1.21010 1.00629 0.93922 0.87846 1.19759 0.94338 0.97362 0.95891 1.21104 0.96222 0.99841 0.95945 1.21125 0.99429 0.96445 0.96889 1.21130 0.94243 0.98661 1.00158 1.21129 0.97028 0.99561 0.96405 1.21000 0.99513 0.95326 0.96001 1.22300 0.86491 0.99597 0.98745 1.22206 1.01484 0.95074 0.88395 1.62262 1.07827 1.52635 1.03107 1.22316 0.99397 0.94627 0.89975 1.19223 0.88378 0.96894 0.97015 1.21183 0.94262 1.37448 1.02996 0.92826 1.24981 0.96783 0.96064 0.96436 1.69961 1.03315 1.47233 1.32788 0.86610 0.77851 0.79928 0.83706 1.20727 1.21225 1.19890 0.92855 0.92811 0.92947 0.90427 0.93762 0.91143 0.93286 0.90942 0.93624 0.90264 0.94071 0.86242 0.86165 0.86363 0.86290 0.86158 0.90479 0.94305 0.94783 0.88608 0.91764 0.96381 0.96265 0.95836 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.95 37.16 0.33 -1.27 16 2 C -0.09 -1.25 2.40 -90.63 -0.22 -1.47 16 3 C -0.14 -1.83 8.59 37.15 0.32 -1.51 16 4 C 0.09 1.42 1.69 -67.66 -0.11 1.30 16 5 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 6 C 0.06 0.83 4.17 -3.77 -0.02 0.81 16 7 N -0.54 -7.22 4.70 -235.90 -1.11 -8.32 16 8 C 0.09 1.04 5.12 -4.98 -0.03 1.02 16 9 C -0.07 -0.83 4.88 -104.62 -0.51 -1.34 16 10 C -0.11 -1.25 7.93 -39.58 -0.31 -1.56 16 11 C -0.12 -1.24 10.05 -39.58 -0.40 -1.64 16 12 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 13 C -0.12 -1.23 10.05 -39.59 -0.40 -1.62 16 14 C -0.10 -1.07 9.70 -39.58 -0.38 -1.46 16 15 C 0.06 0.85 5.27 -3.77 -0.02 0.83 16 16 C 0.06 1.02 4.92 -3.77 -0.02 1.01 16 17 N -0.53 -9.66 4.13 -226.49 -0.93 -10.59 16 18 C 0.06 1.34 4.40 -3.82 -0.02 1.33 16 19 C 0.02 0.57 4.24 -27.88 -0.12 0.45 16 20 C -0.52 -14.75 9.11 -34.44 -0.31 -15.06 16 21 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 24 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 25 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 28 H 0.05 0.53 6.61 -51.93 -0.34 0.19 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 1.19 6.31 -51.93 -0.33 0.86 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 1.09 7.75 -51.93 -0.40 0.69 16 34 H 0.05 0.59 6.31 -51.93 -0.33 0.26 16 35 H 0.07 0.84 6.58 -51.93 -0.34 0.49 16 36 H 0.05 0.62 6.25 -51.93 -0.32 0.29 16 37 H 0.08 0.78 7.97 -51.93 -0.41 0.37 16 38 H 0.04 0.45 8.06 -51.93 -0.42 0.03 16 39 H 0.12 1.24 8.01 -52.49 -0.42 0.81 16 40 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 41 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 43 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.08 1.12 5.97 -51.93 -0.31 0.81 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.10 1.94 6.00 -51.93 -0.31 1.63 16 48 H 0.06 1.35 6.75 -51.93 -0.35 1.00 16 49 H 0.02 0.39 8.08 -51.93 -0.42 -0.03 16 50 H 0.02 0.52 6.26 -51.93 -0.33 0.20 16 51 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 52 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 392.13 15.07 5.91 5.91 Total: -1.00 -29.94 392.13 -12.36 -42.30 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -9.23 Total: 0.27 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -2.71 Total: -20.22 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: -1.31 Total: -45.00 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.94 -12.36 -42.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528612250.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.692 kcal (2) G-P(sol) polarization free energy of solvation -29.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds