Wall clock time and date at job start Tue Mar 31 2020 11:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 H 1.09000 * 109.49282 * 305.00345 * 4 2 1 6 6 C 1.53051 * 109.48827 * 65.04195 * 4 2 1 7 7 N 1.46955 * 109.37028 * 178.36788 * 6 4 2 8 8 C 1.46899 * 111.00490 * 176.81321 * 7 6 4 9 9 C 1.50702 * 109.47286 * 190.00146 * 8 7 6 10 10 C 1.38232 * 120.00003 * 269.72746 * 9 8 7 11 11 C 1.38234 * 119.99915 * 179.81046 * 10 9 8 12 12 C 1.38242 * 119.99568 * 0.41532 * 11 10 9 13 13 C 1.38226 * 120.00368 * 359.81702 * 12 11 10 14 14 C 1.38236 * 120.00132 * 359.97438 * 13 12 11 15 15 C 1.46955 * 110.88151 * 300.68769 * 7 6 4 16 16 C 1.53051 * 109.36750 * 59.31067 * 15 7 6 17 17 N 1.46948 * 109.49341 * 184.95648 * 4 2 1 18 18 C 1.46900 * 111.00124 * 56.84748 * 17 4 2 19 19 C 1.53003 * 109.47486 * 170.00167 * 18 17 4 20 20 C 1.50702 * 109.47005 * 180.02562 * 19 18 17 21 21 H 1.07998 * 120.00225 * 359.97438 * 20 19 18 22 22 C 1.37877 * 119.99850 * 179.97438 * 20 19 18 23 23 N 1.31515 * 119.99986 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00186 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46896 * 89.99862 * 24 22 20 26 26 H 1.48497 * 109.47209 * 209.99957 * 24 22 20 27 27 H 1.48501 * 109.46894 * 330.00339 * 24 22 20 28 28 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.09004 * 109.49030 * 298.34302 * 6 4 2 36 36 H 1.09005 * 109.48497 * 58.40447 * 6 4 2 37 37 H 1.09001 * 109.46945 * 310.00226 * 8 7 6 38 38 H 1.09002 * 109.46829 * 70.00317 * 8 7 6 39 39 H 1.07999 * 120.00070 * 0.02562 * 10 9 8 40 40 H 1.07999 * 120.00415 * 180.21315 * 11 10 9 41 41 H 1.08004 * 119.99647 * 179.78736 * 12 11 10 42 42 H 1.07998 * 120.00022 * 179.97438 * 13 12 11 43 43 H 1.08002 * 120.00215 * 179.97438 * 14 13 12 44 44 H 1.09001 * 109.49233 * 179.28576 * 15 7 6 45 45 H 1.09006 * 109.48882 * 299.35003 * 15 7 6 46 46 H 1.09005 * 109.48497 * 61.56912 * 16 15 7 47 47 H 1.09002 * 109.49171 * 181.61054 * 16 15 7 48 48 H 1.09004 * 109.47133 * 290.00368 * 18 17 4 49 49 H 1.09001 * 109.46958 * 49.99903 * 18 17 4 50 50 H 1.09006 * 109.46679 * 299.99903 * 19 18 17 51 51 H 1.08992 * 109.47023 * 59.99850 * 19 18 17 52 52 H 0.96995 * 119.99836 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 1.6056 -1.7199 -1.2955 6 6 1.6363 0.0694 -2.4959 7 7 2.1609 -0.6048 -3.6917 8 6 1.7299 0.0834 -4.9159 9 6 2.0734 -0.7622 -6.1150 10 6 3.2958 -0.6085 -6.7419 11 6 3.6124 -1.3870 -7.8395 12 6 2.7030 -2.3131 -8.3154 13 6 1.4788 -2.4634 -7.6915 14 6 1.1639 -1.6880 -6.5912 15 6 3.6255 -0.7092 -3.6340 16 6 4.0293 -1.4998 -2.3873 17 7 3.5046 -0.8260 -1.1913 18 6 3.9352 -1.5146 0.0328 19 6 5.4305 -1.8263 -0.0563 20 6 5.8720 -2.5332 1.1993 21 1 5.1576 -2.7392 1.9826 22 6 7.1879 -2.9170 1.3479 23 7 8.0576 -2.6666 0.3937 24 14 7.7353 -3.7927 2.9045 25 1 7.5870 -5.2594 2.7255 26 1 9.1581 -3.4690 3.1802 27 1 6.8959 -3.3458 4.0450 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 0.5492 0.1232 -2.5562 36 1 2.0478 1.0770 -2.4366 37 1 0.6525 0.2449 -4.8817 38 1 2.2392 1.0442 -4.9909 39 1 4.0048 0.1173 -6.3720 40 1 4.5688 -1.2694 -8.3272 41 1 2.9490 -2.9189 -9.1750 42 1 0.7683 -3.1866 -8.0635 43 1 0.2071 -1.8051 -6.1040 44 1 3.9889 -1.2230 -4.5240 45 1 4.0598 0.2896 -3.5875 46 1 3.6177 -2.5074 -2.4466 47 1 5.1163 -1.5540 -2.3272 48 1 3.7483 -0.8742 0.8948 49 1 3.3762 -2.4439 0.1427 50 1 5.6173 -2.4668 -0.9183 51 1 5.9894 -0.8970 -0.1662 52 1 8.9834 -2.9363 0.4985 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528612250.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:01 Heat of formation + Delta-G solvation = 8.877360 kcal Electronic energy + Delta-G solvation = -27310.155663 eV Core-core repulsion = 23887.172651 eV Total energy + Delta-G solvation = -3422.983012 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.09946 -39.95913 -37.21642 -36.35693 -34.85077 -32.87277 -31.77310 -31.25639 -30.63569 -28.33766 -27.92705 -26.21254 -25.41082 -24.56515 -23.40086 -22.31843 -21.91220 -21.32118 -19.73365 -18.61568 -17.60674 -17.21915 -16.74172 -16.45764 -16.28929 -16.06763 -15.78561 -15.59374 -15.31238 -15.20953 -14.77640 -14.43455 -14.28888 -14.19874 -13.99398 -13.65979 -13.47125 -13.37371 -13.21408 -13.06125 -12.84210 -12.69079 -12.57750 -12.43598 -12.17958 -12.07681 -11.97400 -11.88160 -11.80091 -11.73455 -11.47961 -11.30854 -11.10776 -10.95498 -10.54692 -9.76186 -9.67442 -9.29478 -9.12925 -8.21207 -6.32318 0.45904 0.55336 1.38649 1.40083 1.51264 2.39099 2.73562 3.01507 3.12071 3.19555 3.79112 3.79513 3.97481 4.02446 4.05190 4.19821 4.24482 4.29196 4.31469 4.33367 4.40224 4.44081 4.49200 4.57866 4.63484 4.65699 4.70276 4.75478 4.82411 4.85276 4.88543 4.90781 4.97529 5.04131 5.08235 5.13158 5.15605 5.20663 5.21859 5.30197 5.42236 5.49417 5.57623 5.60318 5.64940 5.66603 5.73203 5.77753 6.00225 6.01595 6.13423 6.19321 6.34170 6.35723 6.83752 7.36561 8.90692 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.011423 B = 0.003482 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2450.669836 B = 8038.564169 C = 9910.782132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.091 4.091 3 C -0.133 4.133 4 C 0.093 3.907 5 H 0.027 0.973 6 C 0.069 3.931 7 N -0.542 5.542 8 C 0.097 3.903 9 C -0.088 4.088 10 C -0.128 4.128 11 C -0.132 4.132 12 C -0.130 4.130 13 C -0.130 4.130 14 C -0.110 4.110 15 C 0.072 3.928 16 C 0.061 3.939 17 N -0.534 5.534 18 C 0.084 3.916 19 C 0.034 3.966 20 C -0.545 4.545 21 H 0.057 0.943 22 C 0.003 3.997 23 N -0.930 5.930 24 Si 0.965 3.035 25 H -0.273 1.273 26 H -0.280 1.280 27 H -0.263 1.263 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.039 0.961 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.047 0.953 37 H 0.099 0.901 38 H 0.045 0.955 39 H 0.120 0.880 40 H 0.134 0.866 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.131 0.869 44 H 0.080 0.920 45 H 0.036 0.964 46 H 0.018 0.982 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.010 0.990 50 H -0.003 1.003 51 H -0.007 1.007 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.473 6.484 -14.203 23.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C -0.190 4.190 4 C -0.016 4.016 5 H 0.045 0.955 6 C -0.058 4.058 7 N -0.266 5.266 8 C -0.029 4.029 9 C -0.088 4.088 10 C -0.146 4.146 11 C -0.150 4.150 12 C -0.148 4.148 13 C -0.148 4.148 14 C -0.129 4.129 15 C -0.056 4.056 16 C -0.067 4.067 17 N -0.259 5.259 18 C -0.044 4.044 19 C -0.004 4.004 20 C -0.583 4.583 21 H 0.076 0.924 22 C -0.195 4.195 23 N -0.570 5.570 24 Si 0.789 3.211 25 H -0.198 1.198 26 H -0.206 1.206 27 H -0.187 1.187 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.065 0.935 37 H 0.117 0.883 38 H 0.063 0.937 39 H 0.138 0.862 40 H 0.152 0.848 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.149 0.851 44 H 0.098 0.902 45 H 0.054 0.946 46 H 0.036 0.964 47 H 0.082 0.918 48 H 0.084 0.916 49 H 0.028 0.972 50 H 0.015 0.985 51 H 0.011 0.989 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.308 6.486 -14.242 23.334 hybrid contribution 1.106 -0.754 0.804 1.562 sum -16.202 5.733 -13.438 21.816 Atomic orbital electron populations 1.21809 0.92950 1.01919 1.02870 1.21152 0.96856 0.96945 0.96092 1.21713 1.00657 0.94900 1.01748 1.21747 0.86666 0.97443 0.95736 0.95471 1.22292 1.00443 0.95547 0.87533 1.62144 1.09845 1.52379 1.02251 1.21050 1.01743 0.93704 0.86428 1.19865 0.94714 0.98018 0.96238 1.21249 0.96452 1.00349 0.96557 1.21393 1.00293 0.96474 0.96848 1.21455 0.94104 0.98534 1.00685 1.21446 0.97520 0.99686 0.96113 1.21225 0.99931 0.95293 0.96412 1.22050 0.88060 0.98711 0.96803 1.22073 0.99506 0.95041 0.90122 1.62250 1.10350 1.51540 1.01736 1.21931 0.96137 0.94545 0.91762 1.19019 0.91153 0.94665 0.95526 1.21601 0.94907 1.37952 1.03849 0.92440 1.25931 0.96800 0.96706 1.00035 1.70098 1.03753 1.48162 1.34959 0.85457 0.77532 0.78736 0.79383 1.19838 1.20584 1.18735 0.91114 0.91538 0.93002 0.92661 0.92325 0.94174 0.91641 0.88164 0.93504 0.88262 0.93673 0.86240 0.84836 0.84334 0.84263 0.85080 0.90156 0.94561 0.96417 0.91842 0.91563 0.97179 0.98507 0.98875 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 8.95 71.98 0.64 -2.01 16 2 C -0.09 -2.39 2.40 -10.80 -0.03 -2.41 16 3 C -0.13 -3.32 8.59 71.98 0.62 -2.70 16 4 C 0.09 2.78 1.69 44.92 0.08 2.85 16 5 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 6 C 0.07 1.68 4.17 86.31 0.36 2.04 16 7 N -0.54 -13.96 4.70 -900.26 -4.23 -18.19 16 8 C 0.10 1.99 5.12 85.56 0.44 2.42 16 9 C -0.09 -1.89 4.88 -19.86 -0.10 -1.98 16 10 C -0.13 -2.75 7.93 22.27 0.18 -2.57 16 11 C -0.13 -2.60 10.05 22.27 0.22 -2.37 16 12 C -0.13 -2.34 10.05 22.27 0.22 -2.12 16 13 C -0.13 -2.35 10.05 22.27 0.22 -2.12 16 14 C -0.11 -2.18 9.70 22.27 0.22 -1.97 16 15 C 0.07 2.19 5.27 86.31 0.45 2.65 16 16 C 0.06 2.34 4.92 86.31 0.43 2.76 16 17 N -0.53 -20.08 4.13 -870.49 -3.59 -23.67 16 18 C 0.08 3.71 4.40 86.30 0.38 4.09 16 19 C 0.03 1.84 4.24 29.85 0.13 1.97 16 20 C -0.54 -31.84 9.11 25.60 0.23 -31.61 16 21 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 22 C 0.00 0.20 5.46 84.65 0.46 0.66 16 23 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 24 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 25 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 27 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 28 H 0.07 1.13 6.61 -2.39 -0.02 1.11 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.05 1.69 6.31 -2.39 -0.02 1.67 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.04 1.24 7.75 -2.39 -0.02 1.22 16 34 H 0.06 1.41 6.31 -2.39 -0.02 1.39 16 35 H 0.10 1.93 6.58 -2.39 -0.02 1.92 16 36 H 0.05 1.16 6.25 -2.38 -0.01 1.14 16 37 H 0.10 1.64 7.97 -2.39 -0.02 1.62 16 38 H 0.05 0.90 8.06 -2.39 -0.02 0.88 16 39 H 0.12 2.47 8.01 -2.91 -0.02 2.44 16 40 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 41 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 42 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.13 2.23 8.06 -2.91 -0.02 2.20 16 44 H 0.08 2.39 5.97 -2.39 -0.01 2.38 16 45 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 46 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 47 H 0.06 2.81 6.00 -2.39 -0.01 2.79 16 48 H 0.07 2.90 6.75 -2.38 -0.02 2.88 16 49 H 0.01 0.46 8.08 -2.39 -0.02 0.44 16 50 H 0.00 -0.19 6.26 -2.38 -0.01 -0.21 16 51 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 52 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -66.59 392.13 0.51 -66.08 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.86 Total: 18.30 kcal Atomic # 6 Polarization: -37.59 SS G_CDS: 5.16 Total: -32.43 kcal Atomic # 7 Polarization: -91.45 SS G_CDS: -7.54 Total: -98.99 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -66.59 0.51 -66.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528612250.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.956 kcal (2) G-P(sol) polarization free energy of solvation -66.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds