Wall clock time and date at job start Tue Mar 31 2020 11:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47513 * 2 1 4 4 C 1.52995 * 109.46969 * 120.00215 * 2 1 3 5 5 H 1.09004 * 109.48993 * 183.36580 * 4 2 1 6 6 C 1.53053 * 109.50762 * 303.42139 * 4 2 1 7 7 N 1.46997 * 109.37759 * 178.38163 * 6 4 2 8 8 C 1.46903 * 111.03021 * 176.82214 * 7 6 4 9 9 C 1.53001 * 109.47107 * 189.83990 * 8 7 6 10 10 C 1.50697 * 109.47049 * 180.02562 * 9 8 7 11 11 H 1.08001 * 120.00165 * 359.97438 * 10 9 8 12 12 C 1.37875 * 119.99953 * 179.97438 * 10 9 8 13 13 N 1.31516 * 120.00111 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 120.00059 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.47422 * 89.99890 * 14 12 10 16 16 H 1.48500 * 109.46966 * 210.00104 * 14 12 10 17 17 H 1.48506 * 109.46907 * 329.99653 * 14 12 10 18 18 C 1.46956 * 110.85661 * 300.68951 * 7 6 4 19 19 C 1.53053 * 109.37785 * 59.31064 * 18 7 6 20 20 N 1.46945 * 109.36768 * 301.58635 * 19 18 7 21 21 C 1.46906 * 111.00311 * 183.18827 * 20 19 18 22 22 C 1.50699 * 109.47008 * 295.32260 * 21 20 19 23 23 C 1.38237 * 119.99674 * 268.97733 * 22 21 20 24 24 C 1.38234 * 119.99233 * 179.81311 * 23 22 21 25 25 C 1.38230 * 120.00604 * 0.41712 * 24 23 22 26 26 C 1.38234 * 119.99727 * 359.81796 * 25 24 23 27 27 C 1.38229 * 119.99779 * 89.25651 * 22 21 20 28 28 H 1.08996 * 109.47566 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46587 * 300.00669 * 1 2 3 30 30 H 1.09000 * 109.46858 * 59.99594 * 1 2 3 31 31 H 1.09007 * 109.46645 * 239.99797 * 2 1 3 32 32 H 1.09002 * 109.47336 * 174.61579 * 3 2 1 33 33 H 1.09004 * 109.47109 * 294.61517 * 3 2 1 34 34 H 1.09002 * 109.47474 * 54.60908 * 3 2 1 35 35 H 1.09003 * 109.48472 * 298.34625 * 6 4 2 36 36 H 1.08998 * 109.48940 * 58.38587 * 6 4 2 37 37 H 1.08997 * 109.46831 * 309.83082 * 8 7 6 38 38 H 1.08996 * 109.47215 * 69.83028 * 8 7 6 39 39 H 1.09006 * 109.46380 * 299.99555 * 9 8 7 40 40 H 1.09000 * 109.47388 * 59.99441 * 9 8 7 41 41 H 0.97002 * 119.99889 * 180.02562 * 13 12 10 42 42 H 1.08994 * 109.49013 * 299.33342 * 18 7 6 43 43 H 1.08993 * 109.49222 * 179.28549 * 18 7 6 44 44 H 1.08996 * 109.48938 * 61.56106 * 19 18 7 45 45 H 1.09008 * 109.48905 * 181.59841 * 19 18 7 46 46 H 1.09004 * 109.46472 * 55.32444 * 21 20 19 47 47 H 1.09002 * 109.47105 * 175.31654 * 21 20 19 48 48 H 1.07998 * 120.00204 * 359.97438 * 23 22 21 49 49 H 1.08000 * 119.99821 * 180.20958 * 24 23 22 50 50 H 1.08002 * 120.00519 * 179.79321 * 25 24 23 51 51 H 1.07998 * 120.00066 * 179.97438 * 26 25 24 52 52 H 1.08001 * 120.00263 * 359.97187 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1283 -0.6695 1.2802 6 6 1.4612 -0.0519 2.4979 7 7 1.9218 -0.7708 3.6946 8 6 1.4480 -0.1130 4.9197 9 6 2.1409 -0.7356 6.1334 10 6 1.6545 -0.0612 7.3902 11 1 0.9245 0.7324 7.3294 12 6 2.1414 -0.4574 8.6178 13 7 1.7172 0.1315 9.7146 14 14 3.4034 -1.8305 8.7232 15 1 4.7697 -1.2542 8.6453 16 1 3.2433 -2.5522 10.0111 17 1 3.2003 -2.7769 7.5969 18 6 1.4987 -2.1776 3.6550 19 6 2.0776 -2.8470 2.4062 20 7 1.6170 -2.1282 1.2102 21 6 2.0907 -2.7864 -0.0147 22 6 3.5948 -2.7139 -0.0745 23 6 4.2108 -1.6508 -0.7080 24 6 5.5905 -1.5824 -0.7594 25 6 6.3540 -2.5812 -0.1849 26 6 5.7379 -3.6467 0.4444 27 6 4.3582 -3.7133 0.4991 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3632 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1259 1.4439 0.0964 33 1 1.7577 1.9277 -0.9343 34 1 1.6002 1.9834 0.8378 35 1 1.7974 0.9839 2.5442 36 1 0.3724 -0.0791 2.4536 37 1 1.6813 0.9508 4.8743 38 1 0.3698 -0.2449 5.0093 39 1 1.9076 -1.7994 6.1787 40 1 3.2192 -0.6036 6.0437 41 1 2.0601 -0.1470 10.5783 42 1 0.4105 -2.2293 3.6240 43 1 1.8621 -2.6918 4.5447 44 1 3.1663 -2.8194 2.4504 45 1 1.7416 -3.8830 2.3601 46 1 1.7771 -3.8304 -0.0107 47 1 1.6678 -2.2835 -0.8844 48 1 3.6142 -0.8725 -1.1604 49 1 6.0719 -0.7501 -1.2513 50 1 7.4320 -2.5294 -0.2279 51 1 6.3344 -4.4274 0.8929 52 1 3.8768 -4.5459 0.9905 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528641076.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:05:56 Heat of formation + Delta-G solvation = 11.722248 kcal Electronic energy + Delta-G solvation = -27972.193936 eV Core-core repulsion = 24549.334288 eV Total energy + Delta-G solvation = -3422.859649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.48908 -39.62595 -37.53047 -35.87383 -35.07868 -32.92924 -31.78684 -31.56717 -30.58264 -28.56874 -27.90514 -26.20843 -25.38196 -24.33049 -23.25864 -22.48774 -22.13962 -21.23977 -19.54788 -19.06508 -17.71051 -17.06841 -16.83936 -16.39077 -16.17527 -16.14660 -15.88371 -15.67075 -15.50435 -14.89464 -14.79814 -14.64708 -14.51259 -14.16577 -13.95945 -13.70483 -13.54872 -13.40029 -13.31224 -13.02387 -12.84254 -12.69529 -12.52656 -12.25357 -12.07295 -12.00875 -11.99213 -11.90496 -11.79792 -11.69542 -11.61514 -11.42601 -11.26678 -10.91803 -10.77166 -9.76623 -9.64961 -9.31492 -9.15986 -8.31693 -6.35829 0.44939 0.52642 1.34573 1.35372 1.48214 2.34476 2.80438 2.98583 3.03639 3.06495 3.75565 3.89321 3.94017 3.96273 4.08541 4.15370 4.23387 4.26580 4.28912 4.34523 4.36339 4.41261 4.51192 4.57015 4.63588 4.65601 4.69904 4.75122 4.82964 4.87268 4.88966 4.92437 4.97223 5.02769 5.08178 5.11878 5.15735 5.17212 5.21729 5.28020 5.28921 5.45149 5.48887 5.56289 5.58768 5.60277 5.65022 5.67169 6.02381 6.06587 6.14681 6.20207 6.26925 6.31097 6.71412 7.28902 8.85108 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.012962 B = 0.003891 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.561273 B = 7193.794246 C = 8397.257844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.084 4.084 3 C -0.149 4.149 4 C 0.101 3.899 5 H 0.041 0.959 6 C 0.060 3.940 7 N -0.550 5.550 8 C 0.086 3.914 9 C 0.004 3.996 10 C -0.533 4.533 11 H 0.032 0.968 12 C 0.009 3.991 13 N -0.949 5.949 14 Si 0.951 3.049 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.249 1.249 18 C 0.055 3.945 19 C 0.064 3.936 20 N -0.521 5.521 21 C 0.091 3.909 22 C -0.126 4.126 23 C -0.118 4.118 24 C -0.132 4.132 25 C -0.131 4.131 26 C -0.134 4.134 27 C -0.120 4.120 28 H 0.060 0.940 29 H 0.041 0.959 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.059 0.941 38 H 0.016 0.984 39 H 0.019 0.981 40 H 0.016 0.984 41 H 0.267 0.733 42 H 0.032 0.968 43 H 0.068 0.932 44 H 0.038 0.962 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.133 0.867 49 H 0.136 0.864 50 H 0.134 0.866 51 H 0.131 0.869 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.752 -6.896 -28.160 29.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.103 4.103 3 C -0.206 4.206 4 C -0.008 4.008 5 H 0.058 0.942 6 C -0.067 4.067 7 N -0.274 5.274 8 C -0.042 4.042 9 C -0.034 4.034 10 C -0.572 4.572 11 H 0.050 0.950 12 C -0.188 4.188 13 N -0.590 5.590 14 Si 0.774 3.226 15 H -0.193 1.193 16 H -0.206 1.206 17 H -0.173 1.173 18 C -0.073 4.073 19 C -0.064 4.064 20 N -0.243 5.243 21 C -0.036 4.036 22 C -0.128 4.128 23 C -0.137 4.137 24 C -0.150 4.150 25 C -0.149 4.149 26 C -0.152 4.152 27 C -0.139 4.139 28 H 0.079 0.921 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.034 0.966 39 H 0.037 0.963 40 H 0.034 0.966 41 H 0.076 0.924 42 H 0.050 0.950 43 H 0.086 0.914 44 H 0.056 0.944 45 H 0.112 0.888 46 H 0.110 0.890 47 H 0.117 0.883 48 H 0.151 0.849 49 H 0.154 0.846 50 H 0.152 0.848 51 H 0.149 0.851 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.717 -6.892 -27.962 29.183 hybrid contribution 0.434 -0.145 1.108 1.199 sum 5.152 -7.037 -26.854 28.234 Atomic orbital electron populations 1.21769 0.94465 1.02168 1.01145 1.21222 0.96743 0.95960 0.96406 1.21881 1.00885 0.95496 1.02371 1.21619 0.97182 0.87795 0.94215 0.94153 1.22326 0.97908 0.97494 0.89016 1.62196 1.60284 1.02758 1.02191 1.21768 0.95835 0.97716 0.88881 1.19403 0.95975 0.95908 0.92130 1.21401 1.24654 1.19450 0.91681 0.94964 1.25939 0.98599 0.99177 0.95072 1.70060 1.45924 1.44259 0.98750 0.85654 0.79204 0.79674 0.78083 1.19321 1.20648 1.17285 1.22178 0.97768 0.89041 0.98356 1.22137 0.97997 0.97741 0.88558 1.62567 1.57973 1.01944 1.01835 1.21365 0.87952 1.00930 0.93329 1.20748 0.97885 0.95387 0.98732 1.21380 0.95101 0.97993 0.99202 1.21429 0.94208 0.99305 1.00021 1.21431 1.00805 0.94539 0.98164 1.21407 0.95038 0.99101 0.99639 1.21271 0.94251 0.98974 0.99413 0.92123 0.93949 0.91972 0.89449 0.92855 0.90937 0.93261 0.90902 0.94367 0.92283 0.96556 0.96288 0.96554 0.92388 0.94966 0.91379 0.94425 0.88808 0.88991 0.88336 0.84918 0.84638 0.84783 0.85071 0.85641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 8.63 71.98 0.62 -1.83 16 2 C -0.08 -1.47 1.83 -10.80 -0.02 -1.49 16 3 C -0.15 -2.47 8.77 71.98 0.63 -1.84 16 4 C 0.10 2.33 1.13 44.92 0.05 2.38 16 5 H 0.04 1.09 6.33 -2.39 -0.02 1.07 16 6 C 0.06 1.76 4.18 86.30 0.36 2.12 16 7 N -0.55 -19.46 4.71 -895.61 -4.22 -23.68 16 8 C 0.09 3.64 4.90 86.30 0.42 4.06 16 9 C 0.00 0.18 3.97 29.85 0.12 0.30 16 10 C -0.53 -31.80 9.66 25.60 0.25 -31.55 16 11 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 12 C 0.01 0.55 5.47 84.65 0.46 1.01 16 13 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 14 Si 0.95 45.65 27.47 68.60 1.88 47.53 16 15 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 16 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 17 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 18 C 0.05 1.76 5.41 86.31 0.47 2.23 16 19 C 0.06 1.61 4.98 86.31 0.43 2.04 16 20 N -0.52 -11.39 4.11 -875.01 -3.60 -14.99 16 21 C 0.09 1.55 5.18 85.56 0.44 2.00 16 22 C -0.13 -2.36 4.02 -19.87 -0.08 -2.44 16 23 C -0.12 -2.13 7.90 22.27 0.18 -1.96 16 24 C -0.13 -2.32 10.05 22.27 0.22 -2.10 16 25 C -0.13 -2.36 10.05 22.27 0.22 -2.13 16 26 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 27 C -0.12 -2.33 7.98 22.27 0.18 -2.15 16 28 H 0.06 1.14 7.70 -2.39 -0.02 1.12 16 29 H 0.04 0.88 6.33 -2.39 -0.02 0.86 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.29 4.18 -2.38 -0.01 1.28 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.05 0.93 6.84 -2.39 -0.02 0.91 16 35 H 0.07 2.13 6.66 -2.39 -0.02 2.11 16 36 H 0.04 1.15 6.28 -2.39 -0.01 1.13 16 37 H 0.06 2.54 8.03 -2.39 -0.02 2.52 16 38 H 0.02 0.71 8.12 -2.39 -0.02 0.69 16 39 H 0.02 0.92 5.54 -2.38 -0.01 0.91 16 40 H 0.02 0.81 7.57 -2.39 -0.02 0.79 16 41 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 42 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.07 2.39 6.33 -2.39 -0.02 2.37 16 44 H 0.04 1.04 6.32 -2.39 -0.02 1.02 16 45 H 0.09 1.98 8.12 -2.38 -0.02 1.96 16 46 H 0.09 1.39 8.07 -2.38 -0.02 1.37 16 47 H 0.10 1.43 6.16 -2.39 -0.01 1.42 16 48 H 0.13 2.01 5.66 -2.91 -0.02 2.00 16 49 H 0.14 1.83 8.06 -2.91 -0.02 1.81 16 50 H 0.13 1.87 8.06 -2.91 -0.02 1.85 16 51 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 52 H 0.13 2.16 7.99 -2.91 -0.02 2.14 16 Total: -1.00 -67.89 380.44 0.37 -67.52 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.82 Total: 17.57 kcal Atomic # 6 Polarization: -38.84 SS G_CDS: 5.18 Total: -33.66 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -7.52 Total: -98.96 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.88 Total: 47.53 kcal Total: -67.89 0.37 -67.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528641076.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.241 kcal (2) G-P(sol) polarization free energy of solvation -67.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds