Wall clock time and date at job start Tue Mar 31 2020 10:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46952 * 2 1 4 4 C 1.53005 * 109.46989 * 119.99075 * 2 1 3 5 5 C 1.53000 * 109.46861 * 60.00811 * 4 2 1 6 6 C 1.52993 * 109.47390 * 59.99478 * 5 4 2 7 7 C 1.52997 * 109.47588 * 300.00326 * 6 5 4 8 8 H 1.09008 * 109.46794 * 300.00357 * 7 6 5 9 9 C 1.52993 * 109.47588 * 180.02562 * 7 6 5 10 10 N 1.46900 * 109.47086 * 64.99917 * 9 7 6 11 11 C 1.46897 * 111.00158 * 66.04912 * 10 9 7 12 12 C 1.50700 * 109.47010 * 193.95614 * 11 10 9 13 13 H 1.08004 * 119.99950 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99997 * 180.02562 * 12 11 10 15 15 N 1.31506 * 119.99929 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99870 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47061 * 60.00055 * 16 14 12 18 18 H 1.48504 * 109.46938 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47268 * 299.99710 * 16 14 12 20 20 C 1.46908 * 110.99885 * 190.00240 * 10 9 7 21 21 C 1.50700 * 109.46803 * 170.00032 * 20 10 9 22 22 C 1.38665 * 120.42087 * 90.00080 * 21 20 10 23 23 C 1.38635 * 118.42109 * 180.02562 * 22 21 20 24 24 C 1.38221 * 119.16284 * 359.97438 * 23 22 21 25 25 N 1.31862 * 120.76221 * 359.97438 * 24 23 22 26 26 C 1.31881 * 121.72315 * 0.04192 * 25 24 23 27 27 C 1.52991 * 109.47625 * 239.99446 * 2 1 3 28 28 H 1.09001 * 109.47354 * 300.00106 * 1 2 3 29 29 H 1.08993 * 109.46753 * 60.00726 * 1 2 3 30 30 H 1.09000 * 109.46776 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47599 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46575 * 299.99459 * 3 2 1 33 33 H 1.09002 * 109.47638 * 59.99169 * 3 2 1 34 34 H 1.08994 * 109.47420 * 299.99980 * 4 2 1 35 35 H 1.09008 * 109.46998 * 179.97438 * 4 2 1 36 36 H 1.08994 * 109.46800 * 299.99471 * 5 4 2 37 37 H 1.09001 * 109.46917 * 179.97438 * 5 4 2 38 38 H 1.09000 * 109.47065 * 179.97438 * 6 5 4 39 39 H 1.09008 * 109.47344 * 60.00346 * 6 5 4 40 40 H 1.08997 * 109.47321 * 304.99781 * 9 7 6 41 41 H 1.08999 * 109.47487 * 184.99835 * 9 7 6 42 42 H 1.08996 * 109.46846 * 313.94775 * 11 10 9 43 43 H 1.08996 * 109.47689 * 73.95457 * 11 10 9 44 44 H 0.97005 * 120.00148 * 180.02562 * 15 14 12 45 45 H 1.08996 * 109.46881 * 49.99926 * 20 10 9 46 46 H 1.08999 * 109.46745 * 289.99843 * 20 10 9 47 47 H 1.08003 * 120.79081 * 359.97438 * 22 21 20 48 48 H 1.08004 * 120.41715 * 179.72666 * 23 22 21 49 49 H 1.07993 * 119.62150 * 180.02562 * 24 23 22 50 50 H 1.08011 * 119.61586 * 179.97438 * 26 25 24 51 51 H 1.08994 * 109.47489 * 179.97438 * 27 2 1 52 52 H 1.09001 * 109.47134 * 59.99786 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.5301 -2.1636 1.2495 6 6 2.0401 -2.8849 0.0003 7 6 1.5302 -2.1638 -1.2490 8 1 0.4402 -2.1638 -1.2490 9 6 2.0397 -2.8855 -2.4981 10 7 1.4535 -4.2311 -2.5596 11 6 0.0003 -4.1634 -2.7634 12 6 -0.6097 -5.5124 -2.4821 13 1 0.0193 -6.3376 -2.1823 14 6 -1.9707 -5.6935 -2.6085 15 7 -2.7365 -4.6888 -2.9741 16 14 -2.7268 -7.3658 -2.2605 17 1 -2.4419 -7.7553 -0.8560 18 1 -4.1958 -7.2974 -2.4665 19 1 -2.1437 -8.3741 -3.1818 20 6 2.0950 -5.0375 -3.6067 21 6 1.6482 -6.4712 -3.4809 22 6 0.5219 -6.9174 -4.1557 23 6 0.1479 -8.2443 -4.0100 24 6 0.9050 -9.0728 -3.2032 25 7 1.9711 -8.6142 -2.5772 26 6 2.3560 -7.3581 -2.6923 27 6 2.0401 -0.7213 -1.2491 28 1 -0.3634 0.5138 0.8900 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6766 1.9565 0.8899 34 1 1.6767 -0.2072 2.1393 35 1 3.1301 -0.7215 1.2492 36 1 0.4402 -2.1636 1.2495 37 1 1.8938 -2.6775 2.1393 38 1 1.6772 -3.9127 0.0007 39 1 3.1302 -2.8849 0.0003 40 1 3.1260 -2.9641 -2.4547 41 1 1.7514 -2.3227 -3.3859 42 1 -0.4273 -3.4233 -2.0872 43 1 -0.2091 -3.8778 -3.7943 44 1 -3.6941 -4.8161 -3.0627 45 1 3.1779 -4.9832 -3.4947 46 1 1.8113 -4.6530 -4.5863 47 1 -0.0508 -6.2468 -4.7793 48 1 -0.7263 -8.6249 -4.5174 49 1 0.6206 -10.1079 -3.0848 50 1 3.2347 -7.0185 -2.1638 51 1 3.1301 -0.7209 -1.2493 52 1 1.6768 -0.2076 -2.1391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535775491.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:06 Heat of formation + Delta-G solvation = 20.345137 kcal Electronic energy + Delta-G solvation = -28273.403839 eV Core-core repulsion = 24850.918107 eV Total energy + Delta-G solvation = -3422.485732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.72504 -39.32959 -36.70285 -33.46087 -32.61581 -31.87224 -31.09127 -30.23201 -27.59035 -27.18161 -26.16597 -25.73555 -23.61373 -22.62819 -22.28171 -21.52382 -20.44974 -19.27019 -18.18582 -16.65964 -16.27183 -15.56200 -15.24265 -14.96345 -14.73453 -14.50442 -14.32919 -13.96654 -13.73036 -13.54698 -13.18386 -12.98330 -12.80972 -12.55317 -12.21061 -12.11280 -12.05199 -12.01078 -11.73694 -11.48742 -11.41622 -11.15887 -11.08771 -11.02380 -10.83180 -10.67528 -10.65275 -10.52107 -10.36650 -10.04969 -9.68330 -9.63413 -9.52814 -9.40575 -8.63915 -8.57171 -8.40726 -7.83606 -7.30299 -6.15061 -4.05371 1.96894 2.27331 3.27351 3.33245 3.38732 4.34053 4.54420 4.80265 4.84375 4.93860 5.13974 5.21216 5.24429 5.29787 5.45537 5.53875 5.58286 5.63278 5.68429 5.69639 5.75036 5.79505 5.80273 5.88250 5.89746 5.96460 5.97321 6.04887 6.06604 6.12595 6.13194 6.16307 6.23337 6.25487 6.29875 6.35097 6.50023 6.52119 6.57982 6.59975 6.60964 6.70058 6.96504 6.97773 7.05449 7.18252 7.20199 7.29357 7.58425 7.74404 8.02674 8.11264 8.46062 8.80470 8.94960 9.48475 10.93805 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015391 B = 0.004307 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.813039 B = 6499.680640 C = 7352.918386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.063 4.063 3 C -0.140 4.140 4 C -0.105 4.105 5 C -0.123 4.123 6 C -0.100 4.100 7 C -0.084 4.084 8 H 0.083 0.917 9 C 0.063 3.937 10 N -0.530 5.530 11 C 0.188 3.812 12 C -0.492 4.492 13 H 0.078 0.922 14 C 0.060 3.940 15 N -0.889 5.889 16 Si 0.873 3.127 17 H -0.278 1.278 18 H -0.292 1.292 19 H -0.253 1.253 20 C 0.111 3.889 21 C -0.113 4.113 22 C 0.017 3.983 23 C -0.205 4.205 24 C 0.088 3.912 25 N -0.512 5.512 26 C 0.097 3.903 27 C -0.100 4.100 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.079 0.921 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.020 0.980 42 H 0.036 0.964 43 H -0.011 1.011 44 H 0.262 0.738 45 H 0.064 0.936 46 H 0.030 0.970 47 H 0.127 0.873 48 H 0.120 0.880 49 H 0.136 0.864 50 H 0.139 0.861 51 H 0.056 0.944 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.863 6.326 1.853 11.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.063 4.063 3 C -0.197 4.197 4 C -0.142 4.142 5 C -0.160 4.160 6 C -0.138 4.138 7 C -0.102 4.102 8 H 0.101 0.899 9 C -0.065 4.065 10 N -0.254 5.254 11 C 0.063 3.937 12 C -0.530 4.530 13 H 0.096 0.904 14 C -0.143 4.143 15 N -0.528 5.528 16 Si 0.701 3.299 17 H -0.204 1.204 18 H -0.218 1.218 19 H -0.178 1.178 20 C -0.017 4.017 21 C -0.115 4.115 22 C -0.010 4.010 23 C -0.226 4.226 24 C -0.070 4.070 25 N -0.222 5.222 26 C -0.058 4.058 27 C -0.138 4.138 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.038 0.962 42 H 0.054 0.946 43 H 0.007 0.993 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.048 0.952 47 H 0.145 0.855 48 H 0.138 0.862 49 H 0.154 0.846 50 H 0.157 0.843 51 H 0.075 0.925 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.252 5.606 2.794 11.173 hybrid contribution -1.552 0.266 -0.976 1.853 sum 7.699 5.872 1.819 9.852 Atomic orbital electron populations 1.21978 0.94598 1.02756 1.00942 1.20495 0.95793 0.94419 0.95571 1.21866 1.00569 0.95967 1.01311 1.21574 0.99987 0.96002 0.96640 1.21607 1.01224 0.94930 0.98278 1.21400 0.99245 1.00387 0.92738 1.21211 1.01705 0.92704 0.94621 0.89893 1.22032 0.98149 0.90194 0.96161 1.62171 1.07304 1.10827 1.45101 1.19845 0.80830 0.97920 0.95129 1.21633 0.91888 0.96441 1.43011 0.90417 1.24944 0.97144 0.96739 0.95428 1.69954 1.05206 1.30828 1.46780 0.86967 0.77828 0.85304 0.79823 1.20353 1.21786 1.17818 1.20715 0.97311 0.90280 0.93400 1.20362 0.96907 0.95817 0.98435 1.21161 0.91776 0.93599 0.94463 1.21875 1.01530 0.95383 1.03765 1.22342 0.91582 0.99259 0.93822 1.67542 1.16137 1.16211 1.22282 1.22222 0.99078 0.88698 0.95841 1.21598 0.99890 0.95704 0.96620 0.93361 0.93011 0.91320 0.93025 0.92908 0.93066 0.92798 0.92501 0.91739 0.92760 0.90210 0.93295 0.92369 0.96180 0.94600 0.99339 0.92813 0.91783 0.95217 0.85472 0.86211 0.84625 0.84325 0.92541 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 7.78 37.16 0.29 -1.61 16 2 C -0.06 -0.75 0.77 -154.51 -0.12 -0.87 16 3 C -0.14 -1.44 8.47 37.16 0.31 -1.12 16 4 C -0.10 -1.24 4.73 -26.73 -0.13 -1.36 16 5 C -0.12 -1.67 5.65 -26.73 -0.15 -1.83 16 6 C -0.10 -1.52 5.09 -26.74 -0.14 -1.66 16 7 C -0.08 -1.30 1.86 -90.63 -0.17 -1.47 16 8 H 0.08 1.53 4.41 -51.92 -0.23 1.30 16 9 C 0.06 1.04 4.35 -3.83 -0.02 1.02 16 10 N -0.53 -10.26 4.02 -237.52 -0.95 -11.21 16 11 C 0.19 4.41 4.54 -4.98 -0.02 4.39 16 12 C -0.49 -12.41 5.39 -34.44 -0.19 -12.60 16 13 H 0.08 2.01 4.69 -52.48 -0.25 1.76 16 14 C 0.06 1.59 5.44 -17.82 -0.10 1.49 16 15 N -0.89 -24.72 13.29 55.43 0.74 -23.99 16 16 Si 0.87 20.56 28.33 -169.99 -4.82 15.75 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.25 -5.49 4.89 56.52 0.28 -5.21 16 20 C 0.11 1.99 5.14 -4.97 -0.03 1.96 16 21 C -0.11 -2.16 3.47 -104.48 -0.36 -2.52 16 22 C 0.02 0.33 6.04 -39.28 -0.24 0.09 16 23 C -0.21 -3.93 7.68 -39.44 -0.30 -4.23 16 24 C 0.09 1.65 11.18 -17.54 -0.20 1.45 16 25 N -0.51 -10.10 10.36 -13.25 -0.14 -10.24 16 26 C 0.10 1.83 10.66 -17.55 -0.19 1.64 16 27 C -0.10 -1.30 4.01 -26.74 -0.11 -1.41 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 1.03 4.81 -51.93 -0.25 0.78 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 36 H 0.06 0.95 6.43 -51.93 -0.33 0.62 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.08 1.45 7.75 -51.93 -0.40 1.04 16 39 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 40 H 0.06 0.86 7.93 -51.93 -0.41 0.45 16 41 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 42 H 0.04 0.92 5.91 -51.93 -0.31 0.61 16 43 H -0.01 -0.29 7.99 -51.93 -0.41 -0.70 16 44 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 45 H 0.06 0.99 7.88 -51.93 -0.41 0.58 16 46 H 0.03 0.54 7.97 -51.93 -0.41 0.12 16 47 H 0.13 2.68 7.70 -52.48 -0.40 2.27 16 48 H 0.12 2.16 7.06 -52.48 -0.37 1.79 16 49 H 0.14 2.17 8.06 -52.49 -0.42 1.75 16 50 H 0.14 2.34 8.06 -52.48 -0.42 1.91 16 51 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 52 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 379.96 15.07 5.73 5.73 Total: -1.00 -27.04 379.96 -10.65 -37.70 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -9.37 Total: 4.90 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -1.84 Total: -18.64 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -0.35 Total: -45.43 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.82 Total: 15.75 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -27.04 -10.65 -37.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535775491.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.041 kcal (2) G-P(sol) polarization free energy of solvation -27.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds