Wall clock time and date at job start Tue Mar 31 2020 10:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46952 * 2 1 4 4 C 1.53005 * 109.46989 * 119.99075 * 2 1 3 5 5 C 1.53000 * 109.46861 * 60.00811 * 4 2 1 6 6 C 1.52993 * 109.47390 * 59.99478 * 5 4 2 7 7 C 1.52997 * 109.47588 * 300.00326 * 6 5 4 8 8 H 1.09008 * 109.46794 * 300.00357 * 7 6 5 9 9 C 1.52993 * 109.47588 * 180.02562 * 7 6 5 10 10 N 1.46900 * 109.47086 * 64.99917 * 9 7 6 11 11 C 1.46897 * 111.00158 * 66.04912 * 10 9 7 12 12 C 1.50700 * 109.47010 * 193.95614 * 11 10 9 13 13 H 1.08004 * 119.99950 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99997 * 180.02562 * 12 11 10 15 15 N 1.31506 * 119.99929 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99870 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47061 * 60.00055 * 16 14 12 18 18 H 1.48504 * 109.46938 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47268 * 299.99710 * 16 14 12 20 20 C 1.46908 * 110.99885 * 190.00240 * 10 9 7 21 21 C 1.50700 * 109.46803 * 170.00032 * 20 10 9 22 22 C 1.38665 * 120.42087 * 90.00080 * 21 20 10 23 23 C 1.38635 * 118.42109 * 180.02562 * 22 21 20 24 24 C 1.38221 * 119.16284 * 359.97438 * 23 22 21 25 25 N 1.31862 * 120.76221 * 359.97438 * 24 23 22 26 26 C 1.31881 * 121.72315 * 0.04192 * 25 24 23 27 27 C 1.52991 * 109.47625 * 239.99446 * 2 1 3 28 28 H 1.09001 * 109.47354 * 300.00106 * 1 2 3 29 29 H 1.08993 * 109.46753 * 60.00726 * 1 2 3 30 30 H 1.09000 * 109.46776 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47599 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46575 * 299.99459 * 3 2 1 33 33 H 1.09002 * 109.47638 * 59.99169 * 3 2 1 34 34 H 1.08994 * 109.47420 * 299.99980 * 4 2 1 35 35 H 1.09008 * 109.46998 * 179.97438 * 4 2 1 36 36 H 1.08994 * 109.46800 * 299.99471 * 5 4 2 37 37 H 1.09001 * 109.46917 * 179.97438 * 5 4 2 38 38 H 1.09000 * 109.47065 * 179.97438 * 6 5 4 39 39 H 1.09008 * 109.47344 * 60.00346 * 6 5 4 40 40 H 1.08997 * 109.47321 * 304.99781 * 9 7 6 41 41 H 1.08999 * 109.47487 * 184.99835 * 9 7 6 42 42 H 1.08996 * 109.46846 * 313.94775 * 11 10 9 43 43 H 1.08996 * 109.47689 * 73.95457 * 11 10 9 44 44 H 0.97005 * 120.00148 * 180.02562 * 15 14 12 45 45 H 1.08996 * 109.46881 * 49.99926 * 20 10 9 46 46 H 1.08999 * 109.46745 * 289.99843 * 20 10 9 47 47 H 1.08003 * 120.79081 * 359.97438 * 22 21 20 48 48 H 1.08004 * 120.41715 * 179.72666 * 23 22 21 49 49 H 1.07993 * 119.62150 * 180.02562 * 24 23 22 50 50 H 1.08011 * 119.61586 * 179.97438 * 26 25 24 51 51 H 1.08994 * 109.47489 * 179.97438 * 27 2 1 52 52 H 1.09001 * 109.47134 * 59.99786 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 1.5301 -2.1636 1.2495 6 6 2.0401 -2.8849 0.0003 7 6 1.5302 -2.1638 -1.2490 8 1 0.4402 -2.1638 -1.2490 9 6 2.0397 -2.8855 -2.4981 10 7 1.4535 -4.2311 -2.5596 11 6 0.0003 -4.1634 -2.7634 12 6 -0.6097 -5.5124 -2.4821 13 1 0.0193 -6.3376 -2.1823 14 6 -1.9707 -5.6935 -2.6085 15 7 -2.7365 -4.6888 -2.9741 16 14 -2.7268 -7.3658 -2.2605 17 1 -2.4419 -7.7553 -0.8560 18 1 -4.1958 -7.2974 -2.4665 19 1 -2.1437 -8.3741 -3.1818 20 6 2.0950 -5.0375 -3.6067 21 6 1.6482 -6.4712 -3.4809 22 6 0.5219 -6.9174 -4.1557 23 6 0.1479 -8.2443 -4.0100 24 6 0.9050 -9.0728 -3.2032 25 7 1.9711 -8.6142 -2.5772 26 6 2.3560 -7.3581 -2.6923 27 6 2.0401 -0.7213 -1.2491 28 1 -0.3634 0.5138 0.8900 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6766 1.9565 0.8899 34 1 1.6767 -0.2072 2.1393 35 1 3.1301 -0.7215 1.2492 36 1 0.4402 -2.1636 1.2495 37 1 1.8938 -2.6775 2.1393 38 1 1.6772 -3.9127 0.0007 39 1 3.1302 -2.8849 0.0003 40 1 3.1260 -2.9641 -2.4547 41 1 1.7514 -2.3227 -3.3859 42 1 -0.4273 -3.4233 -2.0872 43 1 -0.2091 -3.8778 -3.7943 44 1 -3.6941 -4.8161 -3.0627 45 1 3.1779 -4.9832 -3.4947 46 1 1.8113 -4.6530 -4.5863 47 1 -0.0508 -6.2468 -4.7793 48 1 -0.7263 -8.6249 -4.5174 49 1 0.6206 -10.1079 -3.0848 50 1 3.2347 -7.0185 -2.1638 51 1 3.1301 -0.7209 -1.2493 52 1 1.6768 -0.2076 -2.1391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535775491.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:05 Heat of formation + Delta-G solvation = 7.225031 kcal Electronic energy + Delta-G solvation = -28273.972770 eV Core-core repulsion = 24850.918107 eV Total energy + Delta-G solvation = -3423.054663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.17097 -40.54425 -38.19670 -34.97038 -34.29731 -33.20891 -32.51667 -31.63826 -29.43134 -28.18186 -27.30841 -26.96695 -25.32762 -24.17144 -23.82559 -22.68042 -21.91574 -20.66153 -19.28285 -18.56325 -17.77162 -17.11424 -16.79158 -16.35527 -16.19423 -15.80848 -15.61853 -15.33893 -15.10845 -14.80594 -14.51656 -14.39410 -14.26029 -13.94763 -13.75187 -13.69490 -13.56904 -13.14866 -12.95933 -12.74984 -12.65300 -12.64277 -12.48551 -12.44985 -12.28380 -12.19280 -12.07256 -11.74680 -11.71212 -11.46889 -11.30780 -10.89988 -10.73938 -10.73046 -10.54901 -10.16132 -10.02772 -9.44461 -8.93079 -8.17932 -6.13366 0.45988 0.71480 1.37644 1.41247 1.45770 2.40155 3.01431 3.21831 3.51164 3.78903 3.80417 3.83482 3.94901 4.09598 4.16371 4.20292 4.32601 4.37957 4.43488 4.47567 4.55571 4.56965 4.63411 4.68360 4.71130 4.75131 4.82139 4.86109 4.88805 4.95820 5.00065 5.01505 5.06593 5.11140 5.14173 5.18263 5.23016 5.25545 5.27243 5.32547 5.41960 5.49073 5.51015 5.56165 5.61014 5.67515 5.73547 5.75484 5.78185 6.06746 6.14105 6.41570 6.69931 6.93176 7.28727 7.45193 8.91569 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.015391 B = 0.004307 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.813039 B = 6499.680640 C = 7352.918386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.062 4.062 3 C -0.135 4.135 4 C -0.098 4.098 5 C -0.122 4.122 6 C -0.093 4.093 7 C -0.079 4.079 8 H 0.044 0.956 9 C 0.063 3.937 10 N -0.532 5.532 11 C 0.208 3.792 12 C -0.485 4.485 13 H 0.075 0.925 14 C 0.016 3.984 15 N -0.929 5.929 16 Si 0.915 3.085 17 H -0.290 1.290 18 H -0.297 1.297 19 H -0.222 1.222 20 C 0.111 3.889 21 C -0.119 4.119 22 C 0.002 3.998 23 C -0.207 4.207 24 C 0.083 3.917 25 N -0.521 5.521 26 C 0.095 3.905 27 C -0.094 4.094 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.039 0.961 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.042 0.958 37 H 0.063 0.937 38 H 0.044 0.956 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.013 0.987 42 H 0.008 0.992 43 H -0.042 1.042 44 H 0.259 0.741 45 H 0.098 0.902 46 H 0.024 0.976 47 H 0.108 0.892 48 H 0.131 0.869 49 H 0.166 0.834 50 H 0.162 0.838 51 H 0.076 0.924 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.514 6.135 2.646 13.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.062 4.062 3 C -0.192 4.192 4 C -0.136 4.136 5 C -0.159 4.159 6 C -0.130 4.130 7 C -0.098 4.098 8 H 0.062 0.938 9 C -0.065 4.065 10 N -0.255 5.255 11 C 0.082 3.918 12 C -0.523 4.523 13 H 0.093 0.907 14 C -0.182 4.182 15 N -0.569 5.569 16 Si 0.742 3.258 17 H -0.216 1.216 18 H -0.224 1.224 19 H -0.145 1.145 20 C -0.018 4.018 21 C -0.121 4.121 22 C -0.025 4.025 23 C -0.227 4.227 24 C -0.074 4.074 25 N -0.230 5.230 26 C -0.060 4.060 27 C -0.132 4.132 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.060 0.940 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.031 0.969 42 H 0.026 0.974 43 H -0.024 1.024 44 H 0.068 0.932 45 H 0.117 0.883 46 H 0.043 0.957 47 H 0.126 0.874 48 H 0.149 0.851 49 H 0.183 0.817 50 H 0.179 0.821 51 H 0.094 0.906 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.928 5.399 3.575 13.572 hybrid contribution -2.300 0.275 -1.242 2.628 sum 9.628 5.674 2.333 11.416 Atomic orbital electron populations 1.21955 0.96009 1.00933 1.01241 1.20504 0.94610 0.95846 0.95213 1.21812 1.01372 0.94199 1.01827 1.21539 1.00828 0.94290 0.96893 1.21577 0.99928 0.96571 0.97851 1.21293 1.00099 0.98405 0.93244 1.21119 0.99383 0.94711 0.94565 0.93788 1.22157 0.99513 0.88558 0.96287 1.62113 1.04953 1.12835 1.45641 1.19434 0.83627 0.96376 0.92357 1.21742 0.91794 0.96834 1.41931 0.90685 1.25544 0.97749 0.99220 0.95704 1.70069 1.05128 1.32566 1.49182 0.86303 0.76982 0.83144 0.79396 1.21631 1.22358 1.14541 1.20822 0.99003 0.89281 0.92645 1.20525 0.96677 0.96572 0.98335 1.21163 0.92383 0.94096 0.94854 1.22069 1.01930 0.95024 1.03694 1.22826 0.91015 1.00566 0.93031 1.67616 1.16501 1.16536 1.22393 1.22589 0.99549 0.88426 0.95412 1.21552 1.00882 0.93606 0.97130 0.92185 0.93557 0.94217 0.91653 0.92914 0.92147 0.91608 0.90877 0.93951 0.91817 0.93756 0.91404 0.89436 0.96893 0.97355 1.02443 0.93218 0.88343 0.95732 0.87404 0.85109 0.81657 0.82094 0.90562 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 7.78 71.98 0.56 -3.25 16 2 C -0.06 -1.38 0.77 -52.18 -0.04 -1.42 16 3 C -0.13 -2.39 8.47 71.98 0.61 -1.78 16 4 C -0.10 -2.09 4.73 30.60 0.14 -1.95 16 5 C -0.12 -3.25 5.65 30.59 0.17 -3.08 16 6 C -0.09 -2.77 5.09 30.59 0.16 -2.62 16 7 C -0.08 -2.48 1.86 -10.80 -0.02 -2.50 16 8 H 0.04 1.74 4.41 -2.38 -0.01 1.73 16 9 C 0.06 2.03 4.35 86.30 0.38 2.40 16 10 N -0.53 -20.74 4.02 -905.39 -3.64 -24.37 16 11 C 0.21 10.27 4.54 85.56 0.39 10.66 16 12 C -0.49 -25.19 5.39 25.60 0.14 -25.05 16 13 H 0.08 3.91 4.69 -2.91 -0.01 3.89 16 14 C 0.02 0.89 5.44 84.66 0.46 1.35 16 15 N -0.93 -54.05 13.29 21.45 0.28 -53.76 16 16 Si 0.92 42.54 28.33 68.60 1.94 44.49 16 17 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 18 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 19 H -0.22 -9.07 4.89 99.48 0.49 -8.59 16 20 C 0.11 3.84 5.14 85.56 0.44 4.28 16 21 C -0.12 -4.43 3.47 -19.77 -0.07 -4.50 16 22 C 0.00 0.07 6.04 22.47 0.14 0.20 16 23 C -0.21 -7.62 7.68 22.36 0.17 -7.45 16 24 C 0.08 2.91 11.18 84.68 0.95 3.86 16 25 N -0.52 -19.29 10.36 -195.84 -2.03 -21.32 16 26 C 0.10 3.40 10.66 84.67 0.90 4.30 16 27 C -0.09 -2.31 4.01 30.59 0.12 -2.19 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.04 1.27 4.81 -2.39 -0.01 1.26 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.04 1.30 6.43 -2.39 -0.02 1.29 16 37 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.04 1.63 7.75 -2.39 -0.02 1.61 16 39 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 40 H 0.09 2.35 7.93 -2.39 -0.02 2.33 16 41 H 0.01 0.44 8.12 -2.39 -0.02 0.42 16 42 H 0.01 0.46 5.91 -2.39 -0.01 0.45 16 43 H -0.04 -2.30 7.99 -2.39 -0.02 -2.32 16 44 H 0.26 14.56 8.31 -92.70 -0.77 13.79 16 45 H 0.10 2.75 7.88 -2.39 -0.02 2.73 16 46 H 0.02 0.88 7.97 -2.39 -0.02 0.86 16 47 H 0.11 4.69 7.70 -2.91 -0.02 4.67 16 48 H 0.13 4.46 7.06 -2.91 -0.02 4.44 16 49 H 0.17 4.72 8.06 -2.91 -0.02 4.69 16 50 H 0.16 4.94 8.06 -2.91 -0.02 4.91 16 51 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 52 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -60.67 379.96 2.81 -57.86 By element: Atomic # 1 Polarization: 25.17 SS G_CDS: 0.65 Total: 25.82 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: 5.60 Total: -28.71 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -5.38 Total: -99.45 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.94 Total: 44.49 kcal Total: -60.67 2.81 -57.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535775491.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.085 kcal (2) G-P(sol) polarization free energy of solvation -60.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds