Wall clock time and date at job start Tue Mar 31 2020 10:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46835 * 2 1 4 4 C 1.52996 * 109.47303 * 120.00162 * 2 1 3 5 5 C 1.53002 * 109.47308 * 60.00127 * 4 2 1 6 6 C 1.53009 * 109.46686 * 60.00090 * 5 4 2 7 7 C 1.52999 * 109.47183 * 299.99611 * 6 5 4 8 8 H 1.08997 * 109.47275 * 300.00642 * 7 6 5 9 9 C 1.53000 * 109.47273 * 180.02562 * 7 6 5 10 10 N 1.46907 * 109.46625 * 65.00376 * 9 7 6 11 11 C 1.46900 * 110.99811 * 66.04561 * 10 9 7 12 12 C 1.50699 * 109.47117 * 63.03975 * 11 10 9 13 13 H 1.08008 * 120.00072 * 4.78767 * 12 11 10 14 14 C 1.37879 * 120.00321 * 184.78785 * 12 11 10 15 15 N 1.31521 * 119.99744 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00351 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47023 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46827 * 119.99950 * 16 14 12 19 19 H 1.48497 * 109.47138 * 240.00120 * 16 14 12 20 20 C 1.46892 * 110.99748 * 190.00058 * 10 9 7 21 21 C 1.50697 * 109.47273 * 163.96255 * 20 10 9 22 22 C 1.38230 * 119.61995 * 94.99552 * 21 20 10 23 23 C 1.38624 * 119.16378 * 179.97438 * 22 21 20 24 24 C 1.38677 * 118.41789 * 359.97438 * 23 22 21 25 25 C 1.38180 * 119.16562 * 0.02562 * 24 23 22 26 26 N 1.31858 * 119.61758 * 274.72805 * 21 20 10 27 27 C 1.53001 * 109.47005 * 240.00490 * 2 1 3 28 28 H 1.08997 * 109.47324 * 299.99454 * 1 2 3 29 29 H 1.08998 * 109.47307 * 59.99895 * 1 2 3 30 30 H 1.09008 * 109.46651 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47057 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47259 * 300.00135 * 3 2 1 33 33 H 1.08998 * 109.47089 * 60.00565 * 3 2 1 34 34 H 1.08998 * 109.47377 * 299.99897 * 4 2 1 35 35 H 1.09006 * 109.46963 * 180.02562 * 4 2 1 36 36 H 1.08997 * 109.47495 * 179.97438 * 5 4 2 37 37 H 1.08994 * 109.47006 * 300.00650 * 5 4 2 38 38 H 1.08992 * 109.47088 * 59.99991 * 6 5 4 39 39 H 1.08998 * 109.46620 * 180.02562 * 6 5 4 40 40 H 1.08997 * 109.46882 * 185.00292 * 9 7 6 41 41 H 1.09001 * 109.47316 * 305.00725 * 9 7 6 42 42 H 1.08998 * 109.47039 * 183.03781 * 11 10 9 43 43 H 1.08999 * 109.47474 * 303.03767 * 11 10 9 44 44 H 0.97001 * 119.99960 * 179.97438 * 15 14 12 45 45 H 1.09008 * 109.47382 * 283.95991 * 20 10 9 46 46 H 1.09002 * 109.47404 * 43.96128 * 20 10 9 47 47 H 1.07997 * 120.41631 * 0.02562 * 22 21 20 48 48 H 1.07994 * 120.79279 * 180.02562 * 23 22 21 49 49 H 1.07999 * 120.41607 * 179.97438 * 24 23 22 50 50 H 1.08001 * 119.61996 * 179.97438 * 25 24 23 51 51 H 1.09007 * 109.46744 * 180.02562 * 27 2 1 52 52 H 1.08998 * 109.47402 * 59.99673 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5301 -2.1638 1.2492 6 6 2.0402 -2.8850 -0.0002 7 6 1.5301 -2.1638 -1.2494 8 1 0.4401 -2.1638 -1.2493 9 6 2.0396 -2.8852 -2.4987 10 7 1.4534 -4.2309 -2.5602 11 6 0.0002 -4.1631 -2.7639 12 6 -0.2911 -3.5154 -4.0931 13 1 0.5204 -3.2573 -4.7574 14 6 -1.5936 -3.2523 -4.4612 15 7 -2.5817 -3.5662 -3.6520 16 14 -1.9546 -2.4488 -6.1084 17 1 -0.6793 -2.1972 -6.8264 18 1 -2.8105 -3.3496 -6.9215 19 1 -2.6609 -1.1614 -5.8870 20 6 2.0948 -5.0370 -3.6073 21 6 1.7665 -6.4921 -3.3929 22 6 0.7011 -7.0587 -4.0672 23 6 0.4079 -8.3981 -3.8633 24 6 1.2012 -9.1211 -2.9851 25 6 2.2497 -8.4868 -2.3467 26 7 2.5021 -7.2114 -2.5682 27 6 2.0399 -0.7212 -1.2493 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -0.2075 2.1392 35 1 3.1301 -0.7208 1.2493 36 1 1.8938 -2.6778 2.1389 37 1 0.4401 -2.1638 1.2491 38 1 3.1301 -2.8849 -0.0002 39 1 1.6765 -3.9125 -0.0004 40 1 1.7512 -2.3223 -3.3863 41 1 3.1259 -2.9638 -2.4552 42 1 -0.4157 -5.1706 -2.7518 43 1 -0.4516 -3.5740 -1.9659 44 1 -3.4980 -3.3808 -3.9107 45 1 1.7280 -4.7220 -4.5843 46 1 3.1750 -4.8979 -3.5626 47 1 0.1052 -6.4655 -4.7450 48 1 -0.4181 -8.8676 -4.3766 49 1 1.0014 -10.1665 -2.8019 50 1 2.8720 -9.0428 -1.6610 51 1 3.1300 -0.7215 -1.2490 52 1 1.6766 -0.2073 -2.1393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000539838902.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:00 Heat of formation + Delta-G solvation = 7.597334 kcal Electronic energy + Delta-G solvation = -27936.913135 eV Core-core repulsion = 24513.874617 eV Total energy + Delta-G solvation = -3423.038518 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.74913 -39.31063 -36.66603 -33.12265 -32.55400 -31.93454 -31.49577 -30.26544 -27.23545 -27.02868 -26.13665 -25.77791 -23.97845 -22.98429 -22.33404 -21.42928 -20.43874 -19.05570 -18.03085 -16.68407 -16.05410 -15.77597 -15.19758 -15.00425 -14.70985 -14.63989 -14.37714 -13.85306 -13.82976 -13.62729 -13.15090 -12.88772 -12.84374 -12.72263 -12.45152 -12.29187 -11.93419 -11.61620 -11.51908 -11.42077 -11.10727 -11.05123 -10.97979 -10.92677 -10.87661 -10.63132 -10.54486 -10.31983 -10.26775 -10.04106 -9.69134 -9.52173 -9.47173 -9.36855 -9.33029 -8.90328 -8.48351 -8.42455 -7.10905 -6.04230 -4.13332 1.59836 1.77758 3.22566 3.32066 3.34316 4.24024 4.37356 4.80703 4.92505 4.96692 5.07152 5.20152 5.21828 5.25483 5.40903 5.45094 5.52101 5.58504 5.67515 5.71451 5.78023 5.82651 5.87520 5.92802 5.97937 6.03140 6.04641 6.11065 6.16514 6.20762 6.25803 6.27243 6.33173 6.37768 6.39390 6.44991 6.50233 6.62221 6.63995 6.66255 6.72234 6.73512 6.77433 6.91573 7.04907 7.16903 7.19727 7.31797 7.55306 7.90366 8.07831 8.28686 8.31372 8.54840 8.97856 9.52977 10.99732 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009718 B = 0.005101 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.444363 B = 5487.862304 C = 7594.530398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.063 4.063 3 C -0.140 4.140 4 C -0.104 4.104 5 C -0.123 4.123 6 C -0.101 4.101 7 C -0.080 4.080 8 H 0.085 0.915 9 C 0.071 3.929 10 N -0.529 5.529 11 C 0.183 3.817 12 C -0.545 4.545 13 H 0.057 0.943 14 C 0.068 3.932 15 N -0.887 5.887 16 Si 0.881 3.119 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.104 3.896 21 C 0.158 3.842 22 C -0.147 4.147 23 C -0.083 4.083 24 C -0.188 4.188 25 C 0.087 3.913 26 N -0.475 5.475 27 C -0.099 4.099 28 H 0.045 0.955 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.042 0.958 41 H 0.048 0.952 42 H 0.027 0.973 43 H 0.038 0.962 44 H 0.261 0.739 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.142 0.858 48 H 0.127 0.873 49 H 0.124 0.876 50 H 0.146 0.854 51 H 0.053 0.947 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.246 -0.374 5.281 9.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.063 4.063 3 C -0.197 4.197 4 C -0.141 4.141 5 C -0.160 4.160 6 C -0.138 4.138 7 C -0.099 4.099 8 H 0.103 0.897 9 C -0.057 4.057 10 N -0.253 5.253 11 C 0.058 3.942 12 C -0.584 4.584 13 H 0.075 0.925 14 C -0.134 4.134 15 N -0.525 5.525 16 Si 0.709 3.291 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.024 4.024 21 C 0.020 3.980 22 C -0.167 4.167 23 C -0.109 4.109 24 C -0.209 4.209 25 C -0.070 4.070 26 N -0.184 5.184 27 C -0.137 4.137 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.067 0.933 42 H 0.045 0.955 43 H 0.056 0.944 44 H 0.070 0.930 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.159 0.841 48 H 0.145 0.855 49 H 0.142 0.858 50 H 0.163 0.837 51 H 0.072 0.928 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.844 -0.193 6.182 10.792 hybrid contribution -1.427 0.379 -2.158 2.615 sum 7.417 0.186 4.024 8.440 Atomic orbital electron populations 1.21959 0.94571 1.02721 1.00852 1.20494 0.95819 0.94362 0.95590 1.21863 1.00497 0.96075 1.01253 1.21559 0.99950 0.95910 0.96696 1.21615 1.01070 0.95108 0.98205 1.21424 0.99384 0.99887 0.93114 1.21142 1.01866 0.92629 0.94245 0.89708 1.21915 0.96721 0.89984 0.97113 1.62418 1.07123 1.11999 1.43743 1.19832 0.81620 0.97132 0.95664 1.21731 0.92163 1.40637 1.03893 0.92518 1.24907 0.96413 0.95486 0.96637 1.69957 0.99245 1.47348 1.35991 0.86712 0.78374 0.79383 0.84611 1.19859 1.21061 1.21007 1.20834 0.98392 0.87309 0.95892 1.21242 0.90519 0.96014 0.90234 1.22214 0.97972 0.95258 1.01292 1.21534 0.98267 0.94362 0.96719 1.21991 0.98091 1.00937 0.99848 1.22605 0.95636 0.91060 0.97715 1.67495 1.29493 1.06567 1.14868 1.21582 0.99620 0.95916 0.96613 0.93605 0.92867 0.91376 0.93092 0.92862 0.93193 0.92925 0.92553 0.92981 0.91867 0.93285 0.90905 0.93971 0.93323 0.95531 0.94407 0.92960 0.91960 0.91442 0.84061 0.85523 0.85757 0.83666 0.92781 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 7.78 37.16 0.29 -1.80 16 2 C -0.06 -0.84 0.77 -154.51 -0.12 -0.96 16 3 C -0.14 -1.62 8.47 37.16 0.31 -1.31 16 4 C -0.10 -1.32 4.73 -26.73 -0.13 -1.44 16 5 C -0.12 -1.73 5.65 -26.72 -0.15 -1.88 16 6 C -0.10 -1.61 5.09 -26.73 -0.14 -1.75 16 7 C -0.08 -1.38 1.84 -90.62 -0.17 -1.55 16 8 H 0.08 1.73 4.56 -51.93 -0.24 1.49 16 9 C 0.07 1.33 4.16 -3.82 -0.02 1.32 16 10 N -0.53 -10.92 4.11 -237.52 -0.98 -11.90 16 11 C 0.18 4.44 4.70 -4.98 -0.02 4.41 16 12 C -0.55 -13.91 7.34 -34.44 -0.25 -14.17 16 13 H 0.06 1.45 5.95 -52.48 -0.31 1.13 16 14 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 15 N -0.89 -24.91 13.29 55.43 0.74 -24.17 16 16 Si 0.88 20.61 29.54 -169.99 -5.02 15.59 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 C 0.10 2.04 5.13 -4.98 -0.03 2.01 16 21 C 0.16 3.03 5.83 -82.59 -0.48 2.55 16 22 C -0.15 -2.71 8.47 -39.44 -0.33 -3.04 16 23 C -0.08 -1.29 10.18 -39.28 -0.40 -1.69 16 24 C -0.19 -2.66 10.11 -39.44 -0.40 -3.06 16 25 C 0.09 1.33 11.18 -17.55 -0.20 1.14 16 26 N -0.47 -8.73 10.27 -9.47 -0.10 -8.83 16 27 C -0.10 -1.48 4.01 -26.73 -0.11 -1.59 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.11 4.81 -51.92 -0.25 0.86 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.95 6.43 -51.93 -0.33 0.61 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.33 7.75 -51.93 -0.40 0.93 16 40 H 0.04 0.87 6.60 -51.93 -0.34 0.53 16 41 H 0.05 0.84 7.86 -51.93 -0.41 0.44 16 42 H 0.03 0.71 6.55 -51.93 -0.34 0.37 16 43 H 0.04 1.00 6.24 -51.93 -0.32 0.68 16 44 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.06 1.28 6.04 -51.92 -0.31 0.96 16 46 H 0.07 1.23 7.81 -51.93 -0.41 0.82 16 47 H 0.14 2.77 8.06 -52.49 -0.42 2.34 16 48 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 49 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 50 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 51 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 52 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 390.14 15.07 5.88 5.88 Total: -1.00 -27.75 390.14 -11.05 -38.80 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -9.15 Total: 5.73 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -2.43 Total: -21.09 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: -0.34 Total: -44.90 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -27.75 -11.05 -38.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000539838902.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.397 kcal (2) G-P(sol) polarization free energy of solvation -27.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds