Wall clock time and date at job start Tue Mar 31 2020 10:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.46835 * 2 1 4 4 C 1.52996 * 109.47303 * 120.00162 * 2 1 3 5 5 C 1.53002 * 109.47308 * 60.00127 * 4 2 1 6 6 C 1.53009 * 109.46686 * 60.00090 * 5 4 2 7 7 C 1.52999 * 109.47183 * 299.99611 * 6 5 4 8 8 H 1.08997 * 109.47275 * 300.00642 * 7 6 5 9 9 C 1.53000 * 109.47273 * 180.02562 * 7 6 5 10 10 N 1.46907 * 109.46625 * 65.00376 * 9 7 6 11 11 C 1.46900 * 110.99811 * 66.04561 * 10 9 7 12 12 C 1.50699 * 109.47117 * 63.03975 * 11 10 9 13 13 H 1.08008 * 120.00072 * 4.78767 * 12 11 10 14 14 C 1.37879 * 120.00321 * 184.78785 * 12 11 10 15 15 N 1.31521 * 119.99744 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00351 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47023 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.46827 * 119.99950 * 16 14 12 19 19 H 1.48497 * 109.47138 * 240.00120 * 16 14 12 20 20 C 1.46892 * 110.99748 * 190.00058 * 10 9 7 21 21 C 1.50697 * 109.47273 * 163.96255 * 20 10 9 22 22 C 1.38230 * 119.61995 * 94.99552 * 21 20 10 23 23 C 1.38624 * 119.16378 * 179.97438 * 22 21 20 24 24 C 1.38677 * 118.41789 * 359.97438 * 23 22 21 25 25 C 1.38180 * 119.16562 * 0.02562 * 24 23 22 26 26 N 1.31858 * 119.61758 * 274.72805 * 21 20 10 27 27 C 1.53001 * 109.47005 * 240.00490 * 2 1 3 28 28 H 1.08997 * 109.47324 * 299.99454 * 1 2 3 29 29 H 1.08998 * 109.47307 * 59.99895 * 1 2 3 30 30 H 1.09008 * 109.46651 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47057 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47259 * 300.00135 * 3 2 1 33 33 H 1.08998 * 109.47089 * 60.00565 * 3 2 1 34 34 H 1.08998 * 109.47377 * 299.99897 * 4 2 1 35 35 H 1.09006 * 109.46963 * 180.02562 * 4 2 1 36 36 H 1.08997 * 109.47495 * 179.97438 * 5 4 2 37 37 H 1.08994 * 109.47006 * 300.00650 * 5 4 2 38 38 H 1.08992 * 109.47088 * 59.99991 * 6 5 4 39 39 H 1.08998 * 109.46620 * 180.02562 * 6 5 4 40 40 H 1.08997 * 109.46882 * 185.00292 * 9 7 6 41 41 H 1.09001 * 109.47316 * 305.00725 * 9 7 6 42 42 H 1.08998 * 109.47039 * 183.03781 * 11 10 9 43 43 H 1.08999 * 109.47474 * 303.03767 * 11 10 9 44 44 H 0.97001 * 119.99960 * 179.97438 * 15 14 12 45 45 H 1.09008 * 109.47382 * 283.95991 * 20 10 9 46 46 H 1.09002 * 109.47404 * 43.96128 * 20 10 9 47 47 H 1.07997 * 120.41631 * 0.02562 * 22 21 20 48 48 H 1.07994 * 120.79279 * 180.02562 * 23 22 21 49 49 H 1.07999 * 120.41607 * 179.97438 * 24 23 22 50 50 H 1.08001 * 119.61996 * 179.97438 * 25 24 23 51 51 H 1.09007 * 109.46744 * 180.02562 * 27 2 1 52 52 H 1.08998 * 109.47402 * 59.99673 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5301 -2.1638 1.2492 6 6 2.0402 -2.8850 -0.0002 7 6 1.5301 -2.1638 -1.2494 8 1 0.4401 -2.1638 -1.2493 9 6 2.0396 -2.8852 -2.4987 10 7 1.4534 -4.2309 -2.5602 11 6 0.0002 -4.1631 -2.7639 12 6 -0.2911 -3.5154 -4.0931 13 1 0.5204 -3.2573 -4.7574 14 6 -1.5936 -3.2523 -4.4612 15 7 -2.5817 -3.5662 -3.6520 16 14 -1.9546 -2.4488 -6.1084 17 1 -0.6793 -2.1972 -6.8264 18 1 -2.8105 -3.3496 -6.9215 19 1 -2.6609 -1.1614 -5.8870 20 6 2.0948 -5.0370 -3.6073 21 6 1.7665 -6.4921 -3.3929 22 6 0.7011 -7.0587 -4.0672 23 6 0.4079 -8.3981 -3.8633 24 6 1.2012 -9.1211 -2.9851 25 6 2.2497 -8.4868 -2.3467 26 7 2.5021 -7.2114 -2.5682 27 6 2.0399 -0.7212 -1.2493 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6767 -0.2075 2.1392 35 1 3.1301 -0.7208 1.2493 36 1 1.8938 -2.6778 2.1389 37 1 0.4401 -2.1638 1.2491 38 1 3.1301 -2.8849 -0.0002 39 1 1.6765 -3.9125 -0.0004 40 1 1.7512 -2.3223 -3.3863 41 1 3.1259 -2.9638 -2.4552 42 1 -0.4157 -5.1706 -2.7518 43 1 -0.4516 -3.5740 -1.9659 44 1 -3.4980 -3.3808 -3.9107 45 1 1.7280 -4.7220 -4.5843 46 1 3.1750 -4.8979 -3.5626 47 1 0.1052 -6.4655 -4.7450 48 1 -0.4181 -8.8676 -4.3766 49 1 1.0014 -10.1665 -2.8019 50 1 2.8720 -9.0428 -1.6610 51 1 3.1300 -0.7215 -1.2490 52 1 1.6766 -0.2073 -2.1393 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000539838902.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:59 Heat of formation + Delta-G solvation = -5.954992 kcal Electronic energy + Delta-G solvation = -27937.500808 eV Core-core repulsion = 24513.874617 eV Total energy + Delta-G solvation = -3423.626191 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.10083 -40.55135 -38.26274 -34.71813 -34.23813 -33.26939 -32.76931 -31.64797 -29.11424 -28.16853 -27.48057 -26.99960 -25.81714 -24.28202 -23.79610 -22.66110 -21.90899 -20.64634 -19.20669 -18.55747 -17.47080 -17.19713 -16.72883 -16.55856 -16.25668 -15.90875 -15.65075 -15.47209 -15.19538 -14.85373 -14.52719 -14.32816 -14.25347 -14.07048 -13.88277 -13.64482 -13.17045 -13.06633 -12.94197 -12.69945 -12.66568 -12.64876 -12.47696 -12.35981 -12.26414 -12.16878 -12.05327 -11.82515 -11.72202 -11.69547 -11.39837 -10.88538 -10.74003 -10.72347 -10.66907 -10.51673 -10.23487 -9.80456 -8.91095 -8.10119 -6.28291 0.29836 0.48587 1.33148 1.36457 1.45941 2.37472 2.89253 3.14131 3.47897 3.58361 3.83330 3.85974 3.95353 4.04977 4.09373 4.21100 4.30123 4.35178 4.40312 4.49967 4.55866 4.57368 4.61764 4.70978 4.77156 4.80474 4.84376 4.87476 4.90832 4.93410 4.99488 5.01334 5.05885 5.11553 5.17626 5.18006 5.26227 5.29037 5.30090 5.34952 5.38996 5.42514 5.44937 5.50941 5.57088 5.62652 5.71412 5.77682 5.84821 5.92649 6.11376 6.32681 6.58579 6.92640 7.21902 7.41690 8.90997 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.009718 B = 0.005101 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2880.444363 B = 5487.862304 C = 7594.530398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.061 4.061 3 C -0.135 4.135 4 C -0.097 4.097 5 C -0.120 4.120 6 C -0.092 4.092 7 C -0.074 4.074 8 H 0.046 0.954 9 C 0.072 3.928 10 N -0.527 5.527 11 C 0.209 3.791 12 C -0.541 4.541 13 H 0.055 0.945 14 C 0.020 3.980 15 N -0.922 5.922 16 Si 0.943 3.057 17 H -0.268 1.268 18 H -0.280 1.280 19 H -0.283 1.283 20 C 0.109 3.891 21 C 0.135 3.865 22 C -0.172 4.172 23 C -0.085 4.085 24 C -0.173 4.173 25 C 0.082 3.918 26 N -0.497 5.497 27 C -0.094 4.094 28 H 0.063 0.937 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.046 0.954 38 H 0.062 0.938 39 H 0.042 0.958 40 H 0.020 0.980 41 H 0.069 0.931 42 H -0.001 1.001 43 H 0.008 0.992 44 H 0.262 0.738 45 H 0.045 0.955 46 H 0.080 0.920 47 H 0.116 0.884 48 H 0.151 0.849 49 H 0.169 0.831 50 H 0.183 0.817 51 H 0.071 0.929 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.024 -0.688 6.143 11.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.061 4.061 3 C -0.192 4.192 4 C -0.135 4.135 5 C -0.157 4.157 6 C -0.130 4.130 7 C -0.092 4.092 8 H 0.064 0.936 9 C -0.056 4.056 10 N -0.250 5.250 11 C 0.082 3.918 12 C -0.580 4.580 13 H 0.073 0.927 14 C -0.180 4.180 15 N -0.562 5.562 16 Si 0.769 3.231 17 H -0.192 1.192 18 H -0.205 1.205 19 H -0.209 1.209 20 C -0.020 4.020 21 C -0.002 4.002 22 C -0.192 4.192 23 C -0.111 4.111 24 C -0.193 4.193 25 C -0.075 4.075 26 N -0.207 5.207 27 C -0.132 4.132 28 H 0.082 0.918 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.038 0.962 41 H 0.088 0.912 42 H 0.017 0.983 43 H 0.026 0.974 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.098 0.902 47 H 0.134 0.866 48 H 0.169 0.831 49 H 0.186 0.814 50 H 0.200 0.800 51 H 0.090 0.910 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.639 -0.500 7.035 12.764 hybrid contribution -1.962 0.334 -2.397 3.115 sum 8.677 -0.166 4.638 9.840 Atomic orbital electron populations 1.21931 0.95924 1.01005 1.01041 1.20500 0.94671 0.95804 0.95137 1.21811 1.01321 0.94281 1.01784 1.21529 1.00763 0.94418 0.96763 1.21579 1.00086 0.96447 0.97606 1.21306 0.99918 0.98246 0.93497 1.21028 0.99470 0.94493 0.94247 0.93608 1.21993 0.97732 0.88805 0.97044 1.62366 1.05165 1.13212 1.44284 1.19340 0.83766 0.94576 0.94109 1.21889 0.92128 1.39872 1.04158 0.92716 1.25634 0.96334 0.96156 0.99865 1.70077 0.99560 1.48744 1.37805 0.85728 0.78283 0.78340 0.80705 1.19185 1.20537 1.20866 1.20784 0.98718 0.88045 0.94450 1.21078 0.91623 0.95794 0.91694 1.22112 0.98296 0.96812 1.01995 1.21878 0.99064 0.93216 0.96959 1.22439 0.96382 1.02721 0.97716 1.23304 0.96261 0.90159 0.97759 1.67461 1.29927 1.08233 1.15075 1.21545 1.00512 0.94007 0.97171 0.91823 0.94198 0.94069 0.91714 0.93292 0.91792 0.91176 0.91039 0.91378 0.93563 0.91922 0.93874 0.96196 0.91224 0.98279 0.97440 0.92941 0.93740 0.90156 0.86615 0.83145 0.81363 0.80028 0.91001 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.18 7.78 71.98 0.56 -3.62 16 2 C -0.06 -1.56 0.77 -52.18 -0.04 -1.60 16 3 C -0.13 -2.79 8.47 71.98 0.61 -2.18 16 4 C -0.10 -2.24 4.73 30.59 0.14 -2.10 16 5 C -0.12 -3.30 5.65 30.60 0.17 -3.13 16 6 C -0.09 -2.98 5.09 30.60 0.16 -2.83 16 7 C -0.07 -2.64 1.84 -10.79 -0.02 -2.66 16 8 H 0.05 2.02 4.56 -2.39 -0.01 2.01 16 9 C 0.07 2.82 4.16 86.30 0.36 3.18 16 10 N -0.53 -22.97 4.11 -905.37 -3.72 -26.69 16 11 C 0.21 10.85 4.70 85.56 0.40 11.25 16 12 C -0.54 -29.16 7.34 25.60 0.19 -28.97 16 13 H 0.05 2.93 5.95 -2.91 -0.02 2.91 16 14 C 0.02 1.08 5.46 84.65 0.46 1.54 16 15 N -0.92 -54.13 13.29 21.45 0.28 -53.85 16 16 Si 0.94 43.56 29.54 68.60 2.03 45.58 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 20 C 0.11 4.43 5.13 85.56 0.44 4.87 16 21 C 0.14 5.34 5.83 42.55 0.25 5.59 16 22 C -0.17 -6.57 8.47 22.36 0.19 -6.38 16 23 C -0.09 -2.58 10.18 22.47 0.23 -2.36 16 24 C -0.17 -4.38 10.11 22.36 0.23 -4.16 16 25 C 0.08 2.33 11.18 84.67 0.95 3.28 16 26 N -0.50 -18.08 10.27 -183.88 -1.89 -19.97 16 27 C -0.09 -2.80 4.01 30.60 0.12 -2.68 16 28 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.04 1.43 4.81 -2.38 -0.01 1.41 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 36 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.05 1.43 6.43 -2.39 -0.02 1.41 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.04 1.64 7.75 -2.39 -0.02 1.62 16 40 H 0.02 0.86 6.60 -2.39 -0.02 0.84 16 41 H 0.07 2.42 7.86 -2.39 -0.02 2.40 16 42 H 0.00 -0.05 6.55 -2.39 -0.02 -0.07 16 43 H 0.01 0.44 6.24 -2.39 -0.01 0.42 16 44 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 45 H 0.04 1.94 6.04 -2.38 -0.01 1.93 16 46 H 0.08 2.99 7.81 -2.39 -0.02 2.97 16 47 H 0.12 4.91 8.06 -2.91 -0.02 4.89 16 48 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 49 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 50 H 0.18 3.69 8.06 -2.91 -0.02 3.66 16 51 H 0.07 1.88 8.14 -2.38 -0.02 1.87 16 52 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -63.81 390.14 2.97 -60.84 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.87 Total: 27.03 kcal Atomic # 6 Polarization: -38.35 SS G_CDS: 5.40 Total: -32.96 kcal Atomic # 7 Polarization: -95.18 SS G_CDS: -5.32 Total: -100.50 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -63.81 2.97 -60.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000539838902.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.885 kcal (2) G-P(sol) polarization free energy of solvation -63.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds