Wall clock time and date at job start Tue Mar 31 2020 10:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47031 * 2 1 4 4 N 1.31888 * 119.61647 * 270.27072 * 3 2 1 5 5 C 1.31860 * 121.72101 * 180.31349 * 4 3 2 6 6 C 1.50701 * 119.61708 * 179.72789 * 5 4 3 7 7 C 1.52995 * 109.47348 * 94.97478 * 6 5 4 8 8 C 1.52995 * 109.47095 * 214.98001 * 6 5 4 9 9 C 1.38229 * 120.76543 * 359.70338 * 5 4 3 10 10 C 1.38630 * 119.15775 * 0.02562 * 9 5 4 11 11 C 1.38181 * 119.61600 * 90.00337 * 3 2 1 12 12 C 1.50705 * 120.41861 * 359.97438 * 11 3 2 13 13 N 1.46899 * 109.46990 * 79.72646 * 12 11 3 14 14 C 1.46847 * 110.99862 * 170.00184 * 13 12 11 15 15 C 1.53044 * 109.51335 * 174.15436 * 14 13 12 16 16 C 1.53119 * 109.27589 * 59.18419 * 15 14 13 17 17 C 1.50703 * 109.51728 * 182.37636 * 16 15 14 18 18 H 1.08001 * 120.00215 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99699 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99840 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47204 * 359.97438 * 21 19 17 23 23 H 1.48490 * 109.47065 * 120.00194 * 21 19 17 24 24 H 1.48503 * 109.46938 * 240.00347 * 21 19 17 25 25 C 1.53120 * 109.16202 * 302.34077 * 16 15 14 26 26 C 1.46847 * 110.99299 * 45.79343 * 13 12 11 27 27 H 1.08999 * 109.47127 * 299.99633 * 1 2 3 28 28 H 1.08994 * 109.47238 * 59.99570 * 1 2 3 29 29 H 1.08997 * 109.47147 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47127 * 240.00367 * 2 1 3 31 31 H 1.08994 * 109.47735 * 120.00248 * 2 1 3 32 32 H 1.09007 * 109.46768 * 334.97412 * 6 5 4 33 33 H 1.09007 * 109.47041 * 300.00672 * 7 6 5 34 34 H 1.09006 * 109.46789 * 59.99938 * 7 6 5 35 35 H 1.08997 * 109.47421 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.47475 * 59.99562 * 8 6 5 37 37 H 1.08997 * 109.47150 * 180.02562 * 8 6 5 38 38 H 1.09006 * 109.46826 * 299.99929 * 8 6 5 39 39 H 1.07990 * 120.41751 * 180.02562 * 9 5 4 40 40 H 1.08004 * 120.78265 * 180.02562 * 10 9 5 41 41 H 1.09002 * 109.46547 * 319.72634 * 12 11 3 42 42 H 1.08997 * 109.46818 * 199.72537 * 12 11 3 43 43 H 1.09002 * 109.46448 * 54.14158 * 14 13 12 44 44 H 1.08994 * 109.45958 * 294.16523 * 14 13 12 45 45 H 1.09000 * 109.49745 * 179.12223 * 15 14 13 46 46 H 1.08999 * 109.49729 * 299.20033 * 15 14 13 47 47 H 1.08993 * 109.52284 * 62.25342 * 16 15 14 48 48 H 0.97004 * 119.99580 * 179.97438 * 20 19 17 49 49 H 1.08996 * 109.50328 * 177.59853 * 25 16 15 50 50 H 1.09004 * 109.50202 * 297.68149 * 25 16 15 51 51 H 1.09005 * 109.46836 * 65.83946 * 26 13 12 52 52 H 1.08995 * 109.45748 * 305.85482 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2444 2.0372 -1.1466 5 6 2.6892 3.2775 -1.1950 6 6 2.9209 3.9340 -2.5316 7 6 1.6843 4.7457 -2.9224 8 6 4.1330 4.8631 -2.4402 9 6 2.9450 3.9829 -0.0341 10 6 2.7286 3.3697 1.1903 11 6 2.2600 2.0647 1.2013 12 6 2.0086 1.3551 2.5069 13 7 3.1402 0.4681 2.8079 14 6 3.0467 -0.0585 4.1755 15 6 4.1564 -1.0874 4.4041 16 6 5.5172 -0.4201 4.1860 17 6 6.6118 -1.4424 4.3525 18 1 6.3630 -2.4663 4.5898 19 6 7.9309 -1.0709 4.2009 20 7 8.2339 0.1757 3.9115 21 14 9.2878 -2.3380 4.4081 22 1 8.6878 -3.6575 4.7309 23 1 10.0645 -2.4421 3.1468 24 1 10.1896 -1.9215 5.5119 25 6 5.5703 0.1624 2.7709 26 6 4.4196 1.1551 2.5896 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.1060 3.1684 -3.2852 33 1 0.8207 4.0837 -2.9874 34 1 1.4992 5.5113 -2.1687 35 1 1.8520 5.2209 -3.8889 36 1 5.0140 4.2848 -2.1619 37 1 4.3002 5.3383 -3.4068 38 1 3.9479 5.6287 -1.6866 39 1 3.3088 4.9986 -0.0803 40 1 2.9193 3.8965 2.1137 41 1 1.0951 0.7654 2.4298 42 1 1.9006 2.0899 3.3047 43 1 2.0760 -0.5340 4.3161 44 1 3.1572 0.7591 4.8878 45 1 4.0964 -1.4666 5.4242 46 1 4.0381 -1.9122 3.7015 47 1 5.6517 0.3795 4.9144 48 1 9.1620 0.4371 3.8053 49 1 6.5204 0.6760 2.6242 50 1 5.4753 -0.6426 2.0422 51 1 4.5236 1.9669 3.3096 52 1 4.4460 1.5608 1.5784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000549930826.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:46 Heat of formation + Delta-G solvation = 7.759712 kcal Electronic energy + Delta-G solvation = -27519.541981 eV Core-core repulsion = 24096.510504 eV Total energy + Delta-G solvation = -3423.031477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.69042 -38.25006 -36.20668 -34.13668 -33.56454 -32.41236 -30.98996 -29.79165 -29.29092 -27.34237 -26.67957 -24.81715 -24.21094 -22.79199 -21.99668 -21.72052 -21.05552 -19.71228 -18.58485 -16.83395 -16.40357 -16.16124 -15.39445 -15.10486 -14.65035 -14.48757 -14.30245 -14.03283 -13.77724 -13.65748 -13.40596 -13.14297 -13.01113 -12.88049 -12.60903 -12.36608 -12.27229 -12.01740 -11.88777 -11.71975 -11.64616 -11.44277 -11.22605 -11.03041 -10.95438 -10.92368 -10.73368 -10.71238 -10.41452 -10.20154 -9.96594 -9.59454 -9.41511 -9.25336 -8.95717 -8.69078 -8.52566 -8.27845 -7.74543 -5.95583 -4.00649 1.19106 1.40387 3.31465 3.39619 3.43642 3.77692 4.13387 4.46469 4.52328 4.61503 4.77812 4.93633 4.98839 5.00939 5.08796 5.18412 5.34826 5.34868 5.38965 5.46177 5.48889 5.50383 5.62984 5.65408 5.67337 5.72735 5.79548 5.87175 5.89574 5.96332 6.01457 6.07495 6.07871 6.10932 6.14353 6.22186 6.27965 6.35777 6.39690 6.50039 6.62721 6.64106 6.85066 6.86389 7.08578 7.16800 7.45158 7.61465 7.67748 7.84187 8.06593 8.16366 8.17986 8.50338 9.03280 9.63751 11.10576 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014440 B = 0.003507 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.655495 B = 7983.146680 C = 9048.911693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 C 0.158 3.842 4 N -0.484 5.484 5 C 0.133 3.867 6 C -0.045 4.045 7 C -0.139 4.139 8 C -0.148 4.148 9 C -0.177 4.177 10 C -0.067 4.067 11 C -0.126 4.126 12 C 0.095 3.905 13 N -0.527 5.527 14 C 0.060 3.940 15 C -0.106 4.106 16 C 0.048 3.952 17 C -0.509 4.509 18 H 0.055 0.945 19 C 0.060 3.940 20 N -0.892 5.892 21 Si 0.889 3.111 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.103 4.103 26 C 0.059 3.941 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.059 0.941 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.082 0.918 42 H 0.035 0.965 43 H 0.058 0.942 44 H 0.024 0.976 45 H 0.050 0.950 46 H 0.057 0.943 47 H 0.019 0.981 48 H 0.258 0.742 49 H 0.090 0.910 50 H 0.042 0.958 51 H 0.019 0.981 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.798 8.773 -9.593 19.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.120 4.120 3 C 0.020 3.980 4 N -0.193 5.193 5 C -0.005 4.005 6 C -0.064 4.064 7 C -0.197 4.197 8 C -0.205 4.205 9 C -0.197 4.197 10 C -0.093 4.093 11 C -0.129 4.129 12 C -0.033 4.033 13 N -0.252 5.252 14 C -0.067 4.067 15 C -0.143 4.143 16 C 0.030 3.970 17 C -0.547 4.547 18 H 0.073 0.927 19 C -0.141 4.141 20 N -0.531 5.531 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.212 1.212 25 C -0.141 4.141 26 C -0.069 4.069 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.121 0.879 32 H 0.106 0.894 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.100 0.900 42 H 0.053 0.947 43 H 0.077 0.923 44 H 0.042 0.958 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.037 0.963 48 H 0.068 0.932 49 H 0.109 0.891 50 H 0.061 0.939 51 H 0.038 0.962 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.824 8.031 -10.703 19.969 hybrid contribution 1.140 0.681 1.512 2.012 sum -13.684 8.711 -9.191 18.644 Atomic orbital electron populations 1.21677 0.94804 1.01766 1.01571 1.20597 0.95668 0.90842 1.04845 1.21037 0.93692 0.96132 0.87180 1.67318 1.12890 1.09548 1.29505 1.21094 0.94477 0.90026 0.94932 1.20000 0.95922 0.97344 0.93151 1.21783 0.97075 0.99601 1.01194 1.21923 0.97327 0.99249 1.02031 1.21851 1.03573 1.01546 0.92727 1.21502 0.95237 0.94301 0.98262 1.20575 1.01172 0.94681 0.96424 1.21032 0.95828 0.94509 0.91981 1.62167 1.01778 1.35417 1.25832 1.22141 0.99411 0.97738 0.87445 1.21673 0.95669 0.97259 0.99735 1.18680 0.90264 0.95081 0.93003 1.21248 0.90844 0.95561 1.47062 0.92711 1.24971 0.98692 0.95148 0.95239 1.69890 1.17975 1.16228 1.49023 0.86589 0.82188 0.81916 0.77621 1.19817 1.21093 1.21177 1.21646 0.96170 0.96974 0.99291 1.22299 0.89528 0.96325 0.98711 0.92932 0.92884 0.92101 0.90484 0.87891 0.89424 0.92431 0.92666 0.92096 0.92142 0.92020 0.92231 0.85064 0.85293 0.89996 0.94659 0.92315 0.95765 0.93162 0.92418 0.96264 0.93214 0.89130 0.93928 0.96224 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.79 37.16 0.36 -1.16 16 2 C -0.08 -1.09 5.57 -27.88 -0.16 -1.24 16 3 C 0.16 2.34 6.03 -82.59 -0.50 1.84 16 4 N -0.48 -7.30 10.19 -5.74 -0.06 -7.36 16 5 C 0.13 1.77 5.79 -82.58 -0.48 1.29 16 6 C -0.04 -0.47 3.23 -91.78 -0.30 -0.77 16 7 C -0.14 -1.22 9.18 37.15 0.34 -0.87 16 8 C -0.15 -1.33 8.62 37.16 0.32 -1.01 16 9 C -0.18 -2.23 9.18 -39.44 -0.36 -2.60 16 10 C -0.07 -0.90 8.81 -39.28 -0.35 -1.25 16 11 C -0.13 -1.83 3.69 -104.48 -0.39 -2.21 16 12 C 0.09 1.35 4.55 -4.97 -0.02 1.33 16 13 N -0.53 -9.10 4.12 -236.11 -0.97 -10.07 16 14 C 0.06 1.05 5.43 -3.83 -0.02 1.03 16 15 C -0.11 -2.18 5.32 -26.65 -0.14 -2.32 16 16 C 0.05 1.20 2.16 -91.65 -0.20 1.00 16 17 C -0.51 -14.02 8.57 -34.44 -0.29 -14.31 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 20 N -0.89 -25.58 11.37 55.43 0.63 -24.95 16 21 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 C -0.10 -2.45 5.12 -26.65 -0.14 -2.59 16 26 C 0.06 1.16 4.82 -3.83 -0.02 1.14 16 27 H 0.05 0.55 7.25 -51.93 -0.38 0.17 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 31 H 0.10 1.48 6.33 -51.93 -0.33 1.15 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.49 6.49 -51.93 -0.34 0.15 16 39 H 0.13 1.35 6.31 -52.49 -0.33 1.02 16 40 H 0.13 1.57 8.06 -52.48 -0.42 1.14 16 41 H 0.08 1.05 6.34 -51.93 -0.33 0.72 16 42 H 0.04 0.48 7.97 -51.93 -0.41 0.07 16 43 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 49 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 50 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 51 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 52 H 0.06 1.10 6.03 -51.93 -0.31 0.78 16 LS Contribution 394.94 15.07 5.95 5.95 Total: -1.00 -29.21 394.94 -11.37 -40.58 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -9.48 Total: 0.55 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -2.42 Total: -21.13 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: -0.40 Total: -42.38 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.21 -11.37 -40.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549930826.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.343 kcal (2) G-P(sol) polarization free energy of solvation -29.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds