Wall clock time and date at job start Tue Mar 31 2020 10:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.47031 * 2 1 4 4 N 1.31888 * 119.61647 * 270.27072 * 3 2 1 5 5 C 1.31860 * 121.72101 * 180.31349 * 4 3 2 6 6 C 1.50701 * 119.61708 * 179.72789 * 5 4 3 7 7 C 1.52995 * 109.47348 * 94.97478 * 6 5 4 8 8 C 1.52995 * 109.47095 * 214.98001 * 6 5 4 9 9 C 1.38229 * 120.76543 * 359.70338 * 5 4 3 10 10 C 1.38630 * 119.15775 * 0.02562 * 9 5 4 11 11 C 1.38181 * 119.61600 * 90.00337 * 3 2 1 12 12 C 1.50705 * 120.41861 * 359.97438 * 11 3 2 13 13 N 1.46899 * 109.46990 * 79.72646 * 12 11 3 14 14 C 1.46847 * 110.99862 * 170.00184 * 13 12 11 15 15 C 1.53044 * 109.51335 * 174.15436 * 14 13 12 16 16 C 1.53119 * 109.27589 * 59.18419 * 15 14 13 17 17 C 1.50703 * 109.51728 * 182.37636 * 16 15 14 18 18 H 1.08001 * 120.00215 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99699 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99840 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99766 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47204 * 359.97438 * 21 19 17 23 23 H 1.48490 * 109.47065 * 120.00194 * 21 19 17 24 24 H 1.48503 * 109.46938 * 240.00347 * 21 19 17 25 25 C 1.53120 * 109.16202 * 302.34077 * 16 15 14 26 26 C 1.46847 * 110.99299 * 45.79343 * 13 12 11 27 27 H 1.08999 * 109.47127 * 299.99633 * 1 2 3 28 28 H 1.08994 * 109.47238 * 59.99570 * 1 2 3 29 29 H 1.08997 * 109.47147 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47127 * 240.00367 * 2 1 3 31 31 H 1.08994 * 109.47735 * 120.00248 * 2 1 3 32 32 H 1.09007 * 109.46768 * 334.97412 * 6 5 4 33 33 H 1.09007 * 109.47041 * 300.00672 * 7 6 5 34 34 H 1.09006 * 109.46789 * 59.99938 * 7 6 5 35 35 H 1.08997 * 109.47421 * 179.97438 * 7 6 5 36 36 H 1.08998 * 109.47475 * 59.99562 * 8 6 5 37 37 H 1.08997 * 109.47150 * 180.02562 * 8 6 5 38 38 H 1.09006 * 109.46826 * 299.99929 * 8 6 5 39 39 H 1.07990 * 120.41751 * 180.02562 * 9 5 4 40 40 H 1.08004 * 120.78265 * 180.02562 * 10 9 5 41 41 H 1.09002 * 109.46547 * 319.72634 * 12 11 3 42 42 H 1.08997 * 109.46818 * 199.72537 * 12 11 3 43 43 H 1.09002 * 109.46448 * 54.14158 * 14 13 12 44 44 H 1.08994 * 109.45958 * 294.16523 * 14 13 12 45 45 H 1.09000 * 109.49745 * 179.12223 * 15 14 13 46 46 H 1.08999 * 109.49729 * 299.20033 * 15 14 13 47 47 H 1.08993 * 109.52284 * 62.25342 * 16 15 14 48 48 H 0.97004 * 119.99580 * 179.97438 * 20 19 17 49 49 H 1.08996 * 109.50328 * 177.59853 * 25 16 15 50 50 H 1.09004 * 109.50202 * 297.68149 * 25 16 15 51 51 H 1.09005 * 109.46836 * 65.83946 * 26 13 12 52 52 H 1.08995 * 109.45748 * 305.85482 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2444 2.0372 -1.1466 5 6 2.6892 3.2775 -1.1950 6 6 2.9209 3.9340 -2.5316 7 6 1.6843 4.7457 -2.9224 8 6 4.1330 4.8631 -2.4402 9 6 2.9450 3.9829 -0.0341 10 6 2.7286 3.3697 1.1903 11 6 2.2600 2.0647 1.2013 12 6 2.0086 1.3551 2.5069 13 7 3.1402 0.4681 2.8079 14 6 3.0467 -0.0585 4.1755 15 6 4.1564 -1.0874 4.4041 16 6 5.5172 -0.4201 4.1860 17 6 6.6118 -1.4424 4.3525 18 1 6.3630 -2.4663 4.5898 19 6 7.9309 -1.0709 4.2009 20 7 8.2339 0.1757 3.9115 21 14 9.2878 -2.3380 4.4081 22 1 8.6878 -3.6575 4.7309 23 1 10.0645 -2.4421 3.1468 24 1 10.1896 -1.9215 5.5119 25 6 5.5703 0.1624 2.7709 26 6 4.4196 1.1551 2.5896 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.1060 3.1684 -3.2852 33 1 0.8207 4.0837 -2.9874 34 1 1.4992 5.5113 -2.1687 35 1 1.8520 5.2209 -3.8889 36 1 5.0140 4.2848 -2.1619 37 1 4.3002 5.3383 -3.4068 38 1 3.9479 5.6287 -1.6866 39 1 3.3088 4.9986 -0.0803 40 1 2.9193 3.8965 2.1137 41 1 1.0951 0.7654 2.4298 42 1 1.9006 2.0899 3.3047 43 1 2.0760 -0.5340 4.3161 44 1 3.1572 0.7591 4.8878 45 1 4.0964 -1.4666 5.4242 46 1 4.0381 -1.9122 3.7015 47 1 5.6517 0.3795 4.9144 48 1 9.1620 0.4371 3.8053 49 1 6.5204 0.6760 2.6242 50 1 5.4753 -0.6426 2.0422 51 1 4.5236 1.9669 3.3096 52 1 4.4460 1.5608 1.5784 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000549930826.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:45 Heat of formation + Delta-G solvation = -6.666907 kcal Electronic energy + Delta-G solvation = -27520.167566 eV Core-core repulsion = 24096.510504 eV Total energy + Delta-G solvation = -3423.657062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.75035 -39.72637 -37.25052 -35.75040 -34.52377 -33.92899 -32.48562 -31.45899 -30.43955 -28.19562 -28.04677 -26.35375 -25.23991 -24.13959 -23.62414 -22.71316 -22.50635 -20.67287 -20.33961 -18.45685 -17.86494 -17.22341 -16.91376 -16.33550 -16.25063 -15.63767 -15.39513 -15.12718 -15.00501 -14.80779 -14.71112 -14.54123 -14.19613 -14.08153 -14.01855 -13.79664 -13.41318 -13.15001 -13.07733 -12.89211 -12.77490 -12.70681 -12.60670 -12.54228 -12.23959 -12.04782 -12.03232 -11.90334 -11.85947 -11.80784 -11.67222 -11.34179 -10.82620 -10.73547 -10.55061 -10.38245 -10.29267 -9.61053 -9.12987 -8.08478 -6.21420 0.14862 0.35941 1.38608 1.40764 1.51934 2.43115 2.70355 3.17254 3.19395 3.21530 3.68318 3.75495 3.92911 4.01639 4.13373 4.22217 4.22421 4.30897 4.32339 4.37528 4.44588 4.48590 4.50825 4.54534 4.61627 4.69464 4.78156 4.79563 4.83761 4.88989 4.93869 4.95112 4.99145 5.01553 5.06801 5.09712 5.12940 5.18020 5.23517 5.30322 5.31677 5.35766 5.36306 5.41351 5.50663 5.57312 5.62557 5.83275 5.99825 6.01934 6.26003 6.32608 6.40834 6.90846 7.12256 7.46395 8.96103 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.014440 B = 0.003507 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.655495 B = 7983.146680 C = 9048.911693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.079 4.079 3 C 0.144 3.856 4 N -0.508 5.508 5 C 0.124 3.876 6 C -0.045 4.045 7 C -0.132 4.132 8 C -0.144 4.144 9 C -0.179 4.179 10 C -0.074 4.074 11 C -0.141 4.141 12 C 0.100 3.900 13 N -0.530 5.530 14 C 0.066 3.934 15 C -0.099 4.099 16 C 0.046 3.954 17 C -0.530 4.530 18 H 0.051 0.949 19 C 0.011 3.989 20 N -0.918 5.918 21 Si 0.952 3.048 22 H -0.267 1.267 23 H -0.282 1.282 24 H -0.280 1.280 25 C -0.092 4.092 26 C 0.079 3.921 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.155 0.845 40 H 0.142 0.858 41 H 0.102 0.898 42 H 0.047 0.953 43 H 0.095 0.905 44 H 0.024 0.976 45 H 0.055 0.945 46 H 0.052 0.948 47 H -0.012 1.012 48 H 0.259 0.741 49 H 0.055 0.945 50 H 0.025 0.975 51 H 0.013 0.987 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.219 9.293 -9.769 21.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.117 4.117 3 C 0.006 3.994 4 N -0.217 5.217 5 C -0.014 4.014 6 C -0.065 4.065 7 C -0.190 4.190 8 C -0.202 4.202 9 C -0.199 4.199 10 C -0.101 4.101 11 C -0.144 4.144 12 C -0.027 4.027 13 N -0.255 5.255 14 C -0.061 4.061 15 C -0.137 4.137 16 C 0.027 3.973 17 C -0.569 4.569 18 H 0.070 0.930 19 C -0.187 4.187 20 N -0.558 5.558 21 Si 0.778 3.222 22 H -0.191 1.191 23 H -0.208 1.208 24 H -0.206 1.206 25 C -0.131 4.131 26 C -0.049 4.049 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.173 0.827 40 H 0.159 0.841 41 H 0.120 0.880 42 H 0.065 0.935 43 H 0.113 0.887 44 H 0.042 0.958 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.006 0.994 48 H 0.068 0.932 49 H 0.074 0.926 50 H 0.043 0.957 51 H 0.032 0.968 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.264 8.546 -10.875 21.350 hybrid contribution 1.598 0.544 1.523 2.273 sum -14.666 9.090 -9.353 19.626 Atomic orbital electron populations 1.21618 0.92828 1.02816 1.01693 1.20580 0.97346 0.90019 1.03799 1.21295 0.93933 0.96758 0.87434 1.67352 1.13904 1.10590 1.29878 1.21629 0.93621 0.89700 0.96492 1.20087 0.97433 0.97483 0.91465 1.21738 0.95597 0.99231 1.02433 1.21907 0.95813 0.98948 1.03488 1.22129 1.02964 1.02578 0.92186 1.21766 0.94828 0.94249 0.99209 1.20632 1.02191 0.95245 0.96299 1.21069 0.94903 0.94554 0.92195 1.62075 1.01449 1.36139 1.25866 1.22088 0.99664 0.96965 0.87397 1.21536 0.94489 0.97730 0.99922 1.18644 0.92255 0.93935 0.92441 1.21634 0.92116 0.96002 1.47111 0.93043 1.25745 1.01001 0.96979 0.95016 1.70030 1.18357 1.17829 1.49585 0.85602 0.79307 0.79767 0.77574 1.19089 1.20838 1.20626 1.21391 0.96471 0.96915 0.98310 1.21912 0.89666 0.94811 0.98468 0.92185 0.93311 0.90571 0.91502 0.88835 0.90498 0.93575 0.92001 0.90143 0.93752 0.90125 0.91142 0.82720 0.84066 0.87971 0.93504 0.88682 0.95765 0.92603 0.92968 0.99366 0.93225 0.92626 0.95658 0.96850 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.79 71.98 0.70 -1.95 16 2 C -0.08 -2.07 5.57 29.85 0.17 -1.90 16 3 C 0.14 4.18 6.03 42.54 0.26 4.43 16 4 N -0.51 -15.23 10.19 -172.07 -1.75 -16.98 16 5 C 0.12 3.20 5.79 42.55 0.25 3.45 16 6 C -0.05 -0.91 3.23 -11.54 -0.04 -0.94 16 7 C -0.13 -2.08 9.18 71.98 0.66 -1.42 16 8 C -0.14 -2.36 8.62 71.98 0.62 -1.74 16 9 C -0.18 -4.27 9.18 22.36 0.21 -4.07 16 10 C -0.07 -1.91 8.81 22.47 0.20 -1.71 16 11 C -0.14 -3.92 3.69 -19.77 -0.07 -3.99 16 12 C 0.10 2.64 4.55 85.56 0.39 3.03 16 13 N -0.53 -17.66 4.12 -900.91 -3.71 -21.37 16 14 C 0.07 2.18 5.43 86.33 0.47 2.65 16 15 C -0.10 -4.05 5.32 30.65 0.16 -3.89 16 16 C 0.05 2.33 2.16 -11.46 -0.02 2.31 16 17 C -0.53 -29.86 8.57 25.60 0.22 -29.64 16 18 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 19 C 0.01 0.61 5.31 84.66 0.45 1.06 16 20 N -0.92 -54.12 11.37 21.45 0.24 -53.88 16 21 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 25 C -0.09 -4.57 5.12 30.65 0.16 -4.41 16 26 C 0.08 3.16 4.82 86.33 0.42 3.58 16 27 H 0.06 1.11 7.25 -2.39 -0.02 1.09 16 28 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.09 2.59 6.33 -2.39 -0.02 2.58 16 32 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 0.99 6.49 -2.38 -0.02 0.97 16 39 H 0.16 2.84 6.31 -2.92 -0.02 2.82 16 40 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 41 H 0.10 2.30 6.34 -2.39 -0.02 2.29 16 42 H 0.05 1.15 7.97 -2.39 -0.02 1.13 16 43 H 0.09 2.50 8.12 -2.39 -0.02 2.48 16 44 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 46 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 47 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 48 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 49 H 0.06 3.12 6.17 -2.39 -0.01 3.11 16 50 H 0.02 1.29 8.14 -2.38 -0.02 1.27 16 51 H 0.01 0.55 8.14 -2.38 -0.02 0.53 16 52 H 0.05 2.20 6.03 -2.39 -0.01 2.19 16 Total: -1.00 -64.69 394.94 2.85 -61.83 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.86 Total: 18.98 kcal Atomic # 6 Polarization: -40.34 SS G_CDS: 5.18 Total: -35.16 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -5.22 Total: -92.23 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -64.69 2.85 -61.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549930826.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.167 kcal (2) G-P(sol) polarization free energy of solvation -64.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds