Wall clock time and date at job start Tue Mar 31 2020 11:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47608 * 2 1 4 4 C 1.53006 * 109.47249 * 240.00037 * 2 1 3 5 5 C 1.52997 * 109.47306 * 174.99630 * 4 2 1 6 6 H 1.09002 * 108.66807 * 56.69262 * 5 4 2 7 7 C 1.45857 * 108.79539 * 174.99848 * 5 4 2 8 8 C 1.54504 * 111.60042 * 182.20904 * 7 5 4 9 9 C 1.50463 * 108.84878 * 282.79756 * 8 7 5 10 10 C 1.54285 * 113.02873 * 92.15786 * 9 8 7 11 11 C 1.54072 * 112.28901 * 318.30410 * 10 9 8 12 12 N 1.44267 * 111.98660 * 318.91390 * 11 10 9 13 13 N 1.46900 * 109.47351 * 119.99850 * 2 1 3 14 14 C 1.46899 * 111.00440 * 275.00078 * 13 2 1 15 15 C 1.50695 * 109.47324 * 179.97438 * 14 13 2 16 16 C 1.38634 * 119.75051 * 269.72490 * 15 14 13 17 17 C 1.37617 * 120.24529 * 179.76357 * 16 15 14 18 18 C 1.40711 * 119.74954 * 0.52945 * 17 16 15 19 19 C 1.41393 * 120.24535 * 179.74446 * 18 17 16 20 20 H 1.07995 * 119.99882 * 150.22240 * 19 18 17 21 21 C 1.39944 * 120.00272 * 330.21944 * 19 18 17 22 22 N 1.30819 * 120.00349 * 161.72388 * 21 19 18 23 23 Si 1.86802 * 119.99943 * 341.72812 * 21 19 18 24 24 H 1.48503 * 109.47219 * 95.40666 * 23 21 19 25 25 H 1.48500 * 109.47197 * 215.40912 * 23 21 19 26 26 H 1.48510 * 109.47100 * 335.40967 * 23 21 19 27 27 C 1.40720 * 119.50820 * 359.72668 * 18 17 16 28 28 C 1.37613 * 119.74650 * 359.97438 * 27 18 17 29 29 H 1.09002 * 109.47048 * 299.99697 * 1 2 3 30 30 H 1.08997 * 109.47525 * 60.00042 * 1 2 3 31 31 H 1.09006 * 109.47152 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46516 * 54.99784 * 4 2 1 33 33 H 1.09001 * 109.46874 * 294.99945 * 4 2 1 34 34 H 1.08998 * 109.06039 * 302.76005 * 7 5 4 35 35 H 1.09003 * 109.05377 * 61.66720 * 7 5 4 36 36 H 1.08995 * 109.57482 * 42.60489 * 8 7 5 37 37 H 1.08995 * 109.57798 * 162.85962 * 8 7 5 38 38 H 1.08992 * 108.77110 * 213.07474 * 9 8 7 39 39 H 1.09002 * 108.76852 * 331.24523 * 9 8 7 40 40 H 1.08997 * 108.92142 * 79.03338 * 10 9 8 41 41 H 1.09005 * 108.92124 * 197.67781 * 10 9 8 42 42 H 1.08997 * 108.97948 * 79.56031 * 11 10 9 43 43 H 1.09009 * 108.97678 * 198.26471 * 11 10 9 44 44 H 1.00899 * 110.99458 * 333.54930 * 12 11 10 45 45 H 1.00902 * 110.99721 * 151.04617 * 13 2 1 46 46 H 1.09004 * 109.46676 * 300.00245 * 14 13 2 47 47 H 1.09005 * 109.46918 * 59.99628 * 14 13 2 48 48 H 1.08002 * 119.87300 * 0.02562 * 16 15 14 49 49 H 1.08009 * 120.12539 * 180.28037 * 17 16 15 50 50 H 0.97001 * 120.00330 * 180.02562 * 22 21 19 51 51 H 1.07997 * 120.12377 * 179.97438 * 27 18 17 52 52 H 1.08007 * 119.87702 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 1 3.9828 -1.0229 -0.3942 7 6 4.0447 -1.4043 -2.4414 8 6 5.5868 -1.3850 -2.5343 9 6 6.0218 -0.0706 -3.1234 10 6 6.3189 1.0012 -2.0541 11 6 5.2801 0.9952 -0.9163 12 7 3.9374 0.8137 -1.4118 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 6 2.5874 -0.5218 3.5560 16 6 1.6868 -1.1471 4.4045 17 6 2.1371 -1.8338 5.5089 18 6 3.5164 -1.8904 5.7814 19 6 3.9901 -2.5884 6.9161 20 1 4.9676 -3.0472 6.8987 21 6 3.1923 -2.6848 8.0619 22 7 3.4465 -3.6006 8.9609 23 14 1.7642 -1.5059 8.3075 24 1 0.5110 -2.1388 7.8235 25 1 1.6308 -1.1840 9.7510 26 1 2.0157 -0.2577 7.5431 27 6 4.4208 -1.2474 4.9161 28 6 3.9486 -0.5717 3.8142 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6053 -0.2617 -2.1370 33 1 1.7516 -1.7715 -1.2056 34 1 3.7082 -2.4342 -2.3225 35 1 3.6275 -0.9992 -3.3634 36 1 6.0141 -1.4979 -1.5380 37 1 5.9245 -2.2024 -3.1713 38 1 6.9215 -0.2328 -3.7169 39 1 5.2333 0.2978 -3.7796 40 1 7.3065 0.8151 -1.6320 41 1 6.3167 1.9831 -2.5276 42 1 5.5155 0.1856 -0.2256 43 1 5.3353 1.9432 -0.3809 44 1 3.8546 1.1447 -2.3614 45 1 2.9173 -1.1204 1.0287 46 1 2.7589 1.0462 2.1182 47 1 1.0870 0.6163 2.5526 48 1 0.6283 -1.0987 4.1957 49 1 1.4341 -2.3241 6.1661 50 1 2.8933 -3.6676 9.7548 51 1 5.4815 -1.2841 5.1161 52 1 4.6410 -0.0778 3.1485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563155001.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:08 Heat of formation + Delta-G solvation = -4.090902 kcal Electronic energy + Delta-G solvation = -26908.275276 eV Core-core repulsion = 23484.729918 eV Total energy + Delta-G solvation = -3423.545358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.95316 -38.04800 -36.67980 -34.00999 -33.22576 -33.08061 -31.57153 -29.63655 -29.45294 -27.62932 -26.08769 -25.74341 -23.81075 -22.71560 -21.40237 -21.27351 -20.15396 -19.93747 -19.77191 -17.36570 -16.15962 -15.89471 -15.87011 -15.45553 -15.24302 -14.82673 -14.60061 -14.17506 -13.89105 -13.67466 -13.50751 -13.18297 -12.97999 -12.84177 -12.71440 -12.57541 -12.27834 -12.12449 -11.85100 -11.80981 -11.75571 -11.50175 -11.34425 -11.11149 -11.03687 -10.84945 -10.76273 -10.73107 -10.52383 -10.47068 -10.23177 -10.18106 -9.70483 -9.48188 -9.07161 -8.59348 -7.93762 -7.63901 -7.43886 -6.90311 -4.42772 2.62626 2.75928 3.15549 3.25708 3.36373 4.03258 4.07108 4.27872 4.43217 4.48641 4.58450 4.75698 4.80191 4.82458 4.97968 5.11850 5.22204 5.27120 5.38592 5.47910 5.51549 5.56063 5.58614 5.72011 5.73251 5.76904 5.80135 5.82083 5.87319 5.89076 5.91345 5.95379 5.99534 6.06442 6.13303 6.16922 6.20636 6.28295 6.36021 6.52624 6.63254 6.90068 6.91539 6.96405 7.24265 7.24843 7.49073 7.51554 7.67451 7.82140 7.93376 7.96998 8.19339 8.41349 8.72260 8.86249 10.12440 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.002941 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.716433 B = 9516.925499 C =10378.348138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.087 3.913 3 H 0.057 0.943 4 C -0.110 4.110 5 C 0.075 3.925 6 H 0.078 0.922 7 C -0.145 4.145 8 C -0.122 4.122 9 C -0.121 4.121 10 C -0.151 4.151 11 C 0.054 3.946 12 N -0.662 5.662 13 N -0.680 5.680 14 C 0.126 3.874 15 C -0.210 4.210 16 C -0.054 4.054 17 C -0.239 4.239 18 C 0.095 3.905 19 C -0.451 4.451 20 H 0.089 0.911 21 C 0.084 3.916 22 N -0.812 5.812 23 Si 0.912 3.088 24 H -0.271 1.271 25 H -0.293 1.293 26 H -0.244 1.244 27 C -0.211 4.211 28 C -0.076 4.076 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.056 0.944 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.337 0.663 45 H 0.335 0.665 46 H 0.021 0.979 47 H 0.060 0.940 48 H 0.092 0.908 49 H 0.098 0.902 50 H 0.284 0.716 51 H 0.097 0.903 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.431 7.593 -22.052 23.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.023 4.023 3 H 0.075 0.925 4 C -0.148 4.148 5 C -0.035 4.035 6 H 0.096 0.904 7 C -0.184 4.184 8 C -0.160 4.160 9 C -0.159 4.159 10 C -0.191 4.191 11 C -0.077 4.077 12 N -0.291 5.291 13 N -0.313 5.313 14 C -0.002 4.002 15 C -0.212 4.212 16 C -0.073 4.073 17 C -0.258 4.258 18 C 0.092 3.908 19 C -0.479 4.479 20 H 0.107 0.893 21 C -0.134 4.134 22 N -0.436 5.436 23 Si 0.739 3.261 24 H -0.197 1.197 25 H -0.220 1.220 26 H -0.168 1.168 27 C -0.230 4.230 28 C -0.095 4.095 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.155 0.845 45 H 0.155 0.845 46 H 0.039 0.961 47 H 0.078 0.922 48 H 0.110 0.890 49 H 0.116 0.884 50 H 0.094 0.906 51 H 0.115 0.885 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.511 7.395 -21.027 22.295 hybrid contribution 0.792 0.418 -0.688 1.130 sum 0.282 7.813 -21.715 23.079 Atomic orbital electron populations 1.21796 0.95689 1.01737 1.00507 1.21412 0.94624 0.97093 0.89172 0.92539 1.21814 0.93868 1.01018 0.98105 1.20608 0.96391 0.87968 0.98500 0.90370 1.21272 0.95729 1.01695 0.99659 1.21400 0.95610 0.97181 1.01785 1.21360 1.01273 0.95153 0.98087 1.22640 1.00421 0.98746 0.97252 1.21856 0.86987 1.02367 0.96482 1.61011 1.23700 1.16767 1.27592 1.60737 1.33291 1.33488 1.03783 1.20548 0.98894 0.92127 0.88651 1.18993 0.93142 1.09797 0.99237 1.20430 0.97171 0.95677 0.94050 1.21035 0.95840 1.08505 1.00464 1.17727 0.91215 0.89076 0.92785 1.19489 1.03814 1.28352 0.96268 0.89338 1.26146 0.97543 0.94331 0.95377 1.69701 1.37267 1.27339 1.09342 0.86306 0.80514 0.82876 0.76434 1.19685 1.22022 1.16762 1.20966 0.98188 1.04841 0.99056 1.20470 0.94022 0.98530 0.96439 0.93039 0.93424 0.92525 0.91859 0.91183 0.91136 0.92005 0.91453 0.91774 0.92256 0.92433 0.91743 0.92047 0.91649 0.91154 0.84482 0.84479 0.96056 0.92165 0.88967 0.88399 0.90561 0.88472 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.41 37.15 0.35 -1.30 16 2 C 0.09 1.06 2.57 -67.71 -0.17 0.89 16 3 H 0.06 0.75 7.13 -51.93 -0.37 0.38 16 4 C -0.11 -1.10 4.40 -26.73 -0.12 -1.22 16 5 C 0.08 0.70 1.84 -70.60 -0.13 0.57 16 6 H 0.08 0.88 5.37 -51.93 -0.28 0.60 16 7 C -0.14 -1.16 4.53 -29.32 -0.13 -1.29 16 8 C -0.12 -0.95 5.60 -27.21 -0.15 -1.10 16 9 C -0.12 -0.86 5.28 -27.33 -0.14 -1.00 16 10 C -0.15 -1.13 5.92 -25.50 -0.15 -1.29 16 11 C 0.05 0.49 6.01 -4.67 -0.03 0.46 16 12 N -0.66 -6.00 5.66 -110.98 -0.63 -6.63 16 13 N -0.68 -10.15 6.30 -107.99 -0.68 -10.83 16 14 C 0.13 2.12 5.60 -4.98 -0.03 2.09 16 15 C -0.21 -4.29 5.42 -104.33 -0.56 -4.85 16 16 C -0.05 -1.21 9.67 -39.66 -0.38 -1.59 16 17 C -0.24 -5.91 7.18 -38.87 -0.28 -6.19 16 18 C 0.09 2.45 5.10 -106.83 -0.55 1.91 16 19 C -0.45 -12.44 9.57 -37.74 -0.36 -12.80 16 20 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 21 C 0.08 2.26 5.40 -17.34 -0.09 2.17 16 22 N -0.81 -22.09 13.93 55.55 0.77 -21.31 16 23 Si 0.91 21.35 24.52 -169.99 -4.17 17.18 16 24 H -0.27 -6.18 6.71 56.52 0.38 -5.80 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.24 -5.86 6.86 56.52 0.39 -5.48 16 27 C -0.21 -4.96 9.80 -38.87 -0.38 -5.34 16 28 C -0.08 -1.58 9.67 -39.66 -0.38 -1.97 16 29 H 0.05 0.65 7.45 -51.93 -0.39 0.27 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 35 H 0.06 0.46 7.59 -51.93 -0.39 0.06 16 36 H 0.07 0.60 7.15 -51.93 -0.37 0.22 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.39 6.79 -51.93 -0.35 0.04 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.67 6.51 -51.93 -0.34 0.33 16 43 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 44 H 0.34 2.72 7.36 -39.29 -0.29 2.43 16 45 H 0.34 5.05 6.40 -39.29 -0.25 4.80 16 46 H 0.02 0.35 8.00 -51.93 -0.42 -0.06 16 47 H 0.06 1.01 7.37 -51.93 -0.38 0.63 16 48 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 49 H 0.10 2.43 4.73 -52.48 -0.25 2.18 16 50 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 51 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 52 H 0.09 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 387.72 15.07 5.84 5.84 Total: -1.00 -26.98 387.72 -11.72 -38.70 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -9.16 Total: 8.90 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: -3.70 Total: -31.86 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: -0.53 Total: -38.77 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.17 Total: 17.18 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -26.98 -11.72 -38.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563155001.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.613 kcal (2) G-P(sol) polarization free energy of solvation -26.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds