Wall clock time and date at job start Tue Mar 31 2020 11:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47608 * 2 1 4 4 C 1.53006 * 109.47249 * 240.00037 * 2 1 3 5 5 C 1.52997 * 109.47306 * 174.99630 * 4 2 1 6 6 H 1.09002 * 108.66807 * 56.69262 * 5 4 2 7 7 C 1.45857 * 108.79539 * 174.99848 * 5 4 2 8 8 C 1.54504 * 111.60042 * 182.20904 * 7 5 4 9 9 C 1.50463 * 108.84878 * 282.79756 * 8 7 5 10 10 C 1.54285 * 113.02873 * 92.15786 * 9 8 7 11 11 C 1.54072 * 112.28901 * 318.30410 * 10 9 8 12 12 N 1.44267 * 111.98660 * 318.91390 * 11 10 9 13 13 N 1.46900 * 109.47351 * 119.99850 * 2 1 3 14 14 C 1.46899 * 111.00440 * 275.00078 * 13 2 1 15 15 C 1.50695 * 109.47324 * 179.97438 * 14 13 2 16 16 C 1.38634 * 119.75051 * 269.72490 * 15 14 13 17 17 C 1.37617 * 120.24529 * 179.76357 * 16 15 14 18 18 C 1.40711 * 119.74954 * 0.52945 * 17 16 15 19 19 C 1.41393 * 120.24535 * 179.74446 * 18 17 16 20 20 H 1.07995 * 119.99882 * 150.22240 * 19 18 17 21 21 C 1.39944 * 120.00272 * 330.21944 * 19 18 17 22 22 N 1.30819 * 120.00349 * 161.72388 * 21 19 18 23 23 Si 1.86802 * 119.99943 * 341.72812 * 21 19 18 24 24 H 1.48503 * 109.47219 * 95.40666 * 23 21 19 25 25 H 1.48500 * 109.47197 * 215.40912 * 23 21 19 26 26 H 1.48510 * 109.47100 * 335.40967 * 23 21 19 27 27 C 1.40720 * 119.50820 * 359.72668 * 18 17 16 28 28 C 1.37613 * 119.74650 * 359.97438 * 27 18 17 29 29 H 1.09002 * 109.47048 * 299.99697 * 1 2 3 30 30 H 1.08997 * 109.47525 * 60.00042 * 1 2 3 31 31 H 1.09006 * 109.47152 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46516 * 54.99784 * 4 2 1 33 33 H 1.09001 * 109.46874 * 294.99945 * 4 2 1 34 34 H 1.08998 * 109.06039 * 302.76005 * 7 5 4 35 35 H 1.09003 * 109.05377 * 61.66720 * 7 5 4 36 36 H 1.08995 * 109.57482 * 42.60489 * 8 7 5 37 37 H 1.08995 * 109.57798 * 162.85962 * 8 7 5 38 38 H 1.08992 * 108.77110 * 213.07474 * 9 8 7 39 39 H 1.09002 * 108.76852 * 331.24523 * 9 8 7 40 40 H 1.08997 * 108.92142 * 79.03338 * 10 9 8 41 41 H 1.09005 * 108.92124 * 197.67781 * 10 9 8 42 42 H 1.08997 * 108.97948 * 79.56031 * 11 10 9 43 43 H 1.09009 * 108.97678 * 198.26471 * 11 10 9 44 44 H 1.00899 * 110.99458 * 333.54930 * 12 11 10 45 45 H 1.00902 * 110.99721 * 151.04617 * 13 2 1 46 46 H 1.09004 * 109.46676 * 300.00245 * 14 13 2 47 47 H 1.09005 * 109.46918 * 59.99628 * 14 13 2 48 48 H 1.08002 * 119.87300 * 0.02562 * 16 15 14 49 49 H 1.08009 * 120.12539 * 180.28037 * 17 16 15 50 50 H 0.97001 * 120.00330 * 180.02562 * 22 21 19 51 51 H 1.07997 * 120.12377 * 179.97438 * 27 18 17 52 52 H 1.08007 * 119.87702 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 1 3.9828 -1.0229 -0.3942 7 6 4.0447 -1.4043 -2.4414 8 6 5.5868 -1.3850 -2.5343 9 6 6.0218 -0.0706 -3.1234 10 6 6.3189 1.0012 -2.0541 11 6 5.2801 0.9952 -0.9163 12 7 3.9374 0.8137 -1.4118 13 7 2.0197 -0.6925 1.1994 14 6 2.0825 0.2226 2.3469 15 6 2.5874 -0.5218 3.5560 16 6 1.6868 -1.1471 4.4045 17 6 2.1371 -1.8338 5.5089 18 6 3.5164 -1.8904 5.7814 19 6 3.9901 -2.5884 6.9161 20 1 4.9676 -3.0472 6.8987 21 6 3.1923 -2.6848 8.0619 22 7 3.4465 -3.6006 8.9609 23 14 1.7642 -1.5059 8.3075 24 1 0.5110 -2.1388 7.8235 25 1 1.6308 -1.1840 9.7510 26 1 2.0157 -0.2577 7.5431 27 6 4.4208 -1.2474 4.9161 28 6 3.9486 -0.5717 3.8142 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6053 -0.2617 -2.1370 33 1 1.7516 -1.7715 -1.2056 34 1 3.7082 -2.4342 -2.3225 35 1 3.6275 -0.9992 -3.3634 36 1 6.0141 -1.4979 -1.5380 37 1 5.9245 -2.2024 -3.1713 38 1 6.9215 -0.2328 -3.7169 39 1 5.2333 0.2978 -3.7796 40 1 7.3065 0.8151 -1.6320 41 1 6.3167 1.9831 -2.5276 42 1 5.5155 0.1856 -0.2256 43 1 5.3353 1.9432 -0.3809 44 1 3.8546 1.1447 -2.3614 45 1 2.9173 -1.1204 1.0287 46 1 2.7589 1.0462 2.1182 47 1 1.0870 0.6163 2.5526 48 1 0.6283 -1.0987 4.1957 49 1 1.4341 -2.3241 6.1661 50 1 2.8933 -3.6676 9.7548 51 1 5.4815 -1.2841 5.1161 52 1 4.6410 -0.0778 3.1485 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563155001.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:07 Heat of formation + Delta-G solvation = -19.223094 kcal Electronic energy + Delta-G solvation = -26908.931457 eV Core-core repulsion = 23484.729918 eV Total energy + Delta-G solvation = -3424.201539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.69898 -39.75445 -37.81580 -35.68220 -34.39433 -33.74616 -32.94700 -31.47001 -30.90413 -28.41800 -27.66022 -26.46954 -24.87743 -24.06307 -23.21538 -22.02547 -21.70410 -21.00546 -20.50366 -19.33890 -17.53141 -16.93580 -16.88698 -16.54690 -16.01541 -15.88055 -15.71699 -15.66758 -15.50894 -15.20132 -14.60722 -14.47188 -14.06324 -13.96561 -13.73004 -13.71554 -13.51967 -13.41745 -13.40850 -13.11549 -12.65857 -12.58800 -12.50302 -12.34960 -12.26819 -12.03558 -11.98728 -11.73411 -11.65122 -11.55579 -11.47575 -11.35399 -11.25862 -10.99631 -10.94746 -9.47418 -9.39489 -9.30175 -9.03547 -8.89362 -6.47858 0.78708 0.90430 1.26142 1.39932 1.48547 2.12837 2.58111 3.35044 3.42242 3.60554 3.72335 3.86348 3.98712 4.08338 4.10047 4.19503 4.27848 4.32428 4.35362 4.44376 4.51312 4.58602 4.64594 4.70045 4.75231 4.77014 4.82363 4.86778 4.91063 4.91599 5.03423 5.08073 5.08925 5.10400 5.11098 5.15640 5.20792 5.25697 5.28923 5.34805 5.35464 5.36537 5.42636 5.56961 5.64597 5.79651 5.93076 6.10814 6.17425 6.27552 6.38633 6.44966 6.59601 6.68357 6.76892 6.86598 8.19627 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.002941 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.716433 B = 9516.925499 C =10378.348138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.091 3.909 3 H 0.053 0.947 4 C -0.103 4.103 5 C 0.083 3.917 6 H 0.058 0.942 7 C -0.141 4.141 8 C -0.121 4.121 9 C -0.118 4.118 10 C -0.146 4.146 11 C 0.057 3.943 12 N -0.664 5.664 13 N -0.686 5.686 14 C 0.133 3.867 15 C -0.186 4.186 16 C -0.063 4.063 17 C -0.250 4.250 18 C 0.073 3.927 19 C -0.489 4.489 20 H 0.054 0.946 21 C 0.048 3.952 22 N -0.854 5.854 23 Si 0.966 3.034 24 H -0.260 1.260 25 H -0.277 1.277 26 H -0.254 1.254 27 C -0.222 4.222 28 C -0.072 4.072 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.345 0.655 45 H 0.335 0.665 46 H 0.031 0.969 47 H 0.067 0.933 48 H 0.115 0.885 49 H 0.093 0.907 50 H 0.293 0.707 51 H 0.099 0.901 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.985 9.573 -25.189 26.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.019 4.019 3 H 0.071 0.929 4 C -0.142 4.142 5 C -0.027 4.027 6 H 0.076 0.924 7 C -0.180 4.180 8 C -0.159 4.159 9 C -0.156 4.156 10 C -0.185 4.185 11 C -0.074 4.074 12 N -0.294 5.294 13 N -0.319 5.319 14 C 0.005 3.995 15 C -0.188 4.188 16 C -0.082 4.082 17 C -0.269 4.269 18 C 0.070 3.930 19 C -0.519 4.519 20 H 0.072 0.928 21 C -0.166 4.166 22 N -0.480 5.480 23 Si 0.790 3.210 24 H -0.186 1.186 25 H -0.204 1.204 26 H -0.178 1.178 27 C -0.241 4.241 28 C -0.091 4.091 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.082 0.918 44 H 0.164 0.836 45 H 0.155 0.845 46 H 0.049 0.951 47 H 0.085 0.915 48 H 0.133 0.867 49 H 0.111 0.889 50 H 0.103 0.897 51 H 0.117 0.883 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.925 9.372 -24.180 26.004 hybrid contribution 1.260 -0.112 0.028 1.266 sum -0.664 9.260 -24.152 25.875 Atomic orbital electron populations 1.21787 0.95192 1.01474 1.01071 1.21439 0.94864 0.96774 0.88791 0.92928 1.21760 0.94217 1.00594 0.97585 1.20475 0.95872 0.88245 0.98080 0.92433 1.21216 0.95836 1.01349 0.99589 1.21385 0.95443 0.97925 1.01137 1.21336 1.01820 0.94501 0.97930 1.22575 0.99674 0.99402 0.96869 1.21775 0.87518 1.01305 0.96785 1.60979 1.23675 1.16551 1.28233 1.60683 1.33368 1.33433 1.04456 1.20458 0.99264 0.92032 0.87790 1.19495 0.92743 1.07126 0.99420 1.20738 0.98809 0.95302 0.93356 1.21126 0.95207 1.09142 1.01447 1.17858 0.92372 0.89862 0.92874 1.19475 1.03199 1.30957 0.98280 0.92774 1.26794 0.99657 0.95396 0.94780 1.69726 1.39067 1.28889 1.10358 0.85482 0.78156 0.80442 0.76955 1.18565 1.20406 1.17763 1.21170 0.98268 1.05003 0.99660 1.20781 0.95012 0.97530 0.95763 0.94000 0.91404 0.93163 0.90228 0.91595 0.91419 0.90771 0.92927 0.91221 0.91704 0.91609 0.92049 0.91229 0.93206 0.91812 0.83598 0.84545 0.95116 0.91492 0.86670 0.88939 0.89698 0.88299 0.86250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.83 9.41 71.98 0.68 -2.15 16 2 C 0.09 1.94 2.57 44.92 0.12 2.05 16 3 H 0.05 1.21 7.13 -2.39 -0.02 1.19 16 4 C -0.10 -1.76 4.40 30.60 0.13 -1.63 16 5 C 0.08 1.36 1.84 42.55 0.08 1.44 16 6 H 0.06 1.20 5.37 -2.39 -0.01 1.19 16 7 C -0.14 -1.93 4.53 28.92 0.13 -1.79 16 8 C -0.12 -1.66 5.60 30.28 0.17 -1.49 16 9 C -0.12 -1.39 5.28 30.21 0.16 -1.23 16 10 C -0.15 -1.90 5.92 31.39 0.19 -1.71 16 11 C 0.06 0.93 6.01 87.16 0.52 1.45 16 12 N -0.66 -10.38 5.66 -505.02 -2.86 -13.24 16 13 N -0.69 -18.60 6.30 -495.57 -3.12 -21.73 16 14 C 0.13 4.04 5.60 85.56 0.48 4.52 16 15 C -0.19 -7.13 5.42 -19.67 -0.11 -7.24 16 16 C -0.06 -2.69 9.67 22.22 0.21 -2.47 16 17 C -0.25 -12.26 7.18 22.73 0.16 -12.10 16 18 C 0.07 3.84 5.10 -21.29 -0.11 3.73 16 19 C -0.49 -28.45 9.57 23.46 0.22 -28.23 16 20 H 0.05 3.37 8.06 -2.91 -0.02 3.35 16 21 C 0.05 2.64 5.40 85.26 0.46 3.11 16 22 N -0.85 -48.37 13.93 21.83 0.30 -48.07 16 23 Si 0.97 44.54 24.52 68.60 1.68 46.22 16 24 H -0.26 -11.42 6.71 99.48 0.67 -10.75 16 25 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.25 -11.94 6.86 99.48 0.68 -11.26 16 27 C -0.22 -10.44 9.80 22.73 0.22 -10.21 16 28 C -0.07 -2.88 9.67 22.22 0.21 -2.66 16 29 H 0.04 0.93 7.45 -2.39 -0.02 0.92 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.21 8.08 -2.39 -0.02 1.19 16 34 H 0.07 0.98 8.08 -2.39 -0.02 0.96 16 35 H 0.07 0.86 7.59 -2.39 -0.02 0.84 16 36 H 0.05 0.88 7.15 -2.39 -0.02 0.86 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.07 0.68 6.79 -2.39 -0.02 0.67 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 42 H 0.05 0.97 6.51 -2.39 -0.02 0.95 16 43 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.35 4.50 7.36 -89.69 -0.66 3.84 16 45 H 0.33 9.29 6.40 -89.69 -0.57 8.72 16 46 H 0.03 0.90 8.00 -2.38 -0.02 0.88 16 47 H 0.07 1.99 7.37 -2.38 -0.02 1.98 16 48 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 49 H 0.09 4.58 4.73 -2.91 -0.01 4.57 16 50 H 0.29 14.89 8.30 -92.71 -0.77 14.12 16 51 H 0.10 4.52 8.06 -2.91 -0.02 4.49 16 52 H 0.12 4.00 8.06 -2.91 -0.02 3.98 16 Total: -1.00 -59.65 387.72 -0.45 -60.10 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: -0.40 Total: 33.34 kcal Atomic # 6 Polarization: -60.57 SS G_CDS: 3.94 Total: -56.63 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -5.68 Total: -83.03 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.68 Total: 46.22 kcal Total: -59.65 -0.45 -60.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563155001.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.881 kcal (2) G-P(sol) polarization free energy of solvation -59.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds