Wall clock time and date at job start Tue Mar 31 2020 11:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46575 * 2 1 4 4 C 1.52995 * 109.47059 * 119.99779 * 2 1 3 5 5 C 1.52995 * 109.47342 * 295.70445 * 4 2 1 6 6 H 1.08998 * 108.76210 * 56.04763 * 5 4 2 7 7 C 1.45866 * 108.79691 * 174.40659 * 5 4 2 8 8 C 1.54506 * 111.60094 * 182.21614 * 7 5 4 9 9 C 1.50462 * 108.83998 * 282.79459 * 8 7 5 10 10 C 1.54287 * 113.03227 * 92.16352 * 9 8 7 11 11 C 1.54070 * 112.28459 * 318.29765 * 10 9 8 12 12 N 1.44263 * 111.98749 * 318.91273 * 11 10 9 13 13 N 1.46903 * 109.47372 * 240.00218 * 2 1 3 14 14 C 1.46901 * 111.00099 * 86.22983 * 13 2 1 15 15 C 1.50693 * 109.46926 * 180.02562 * 14 13 2 16 16 C 1.38638 * 119.75271 * 89.99715 * 15 14 13 17 17 C 1.37618 * 120.25256 * 180.02562 * 16 15 14 18 18 C 1.40718 * 119.74368 * 359.97438 * 17 16 15 19 19 C 1.41393 * 120.24616 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99345 * 331.79828 * 19 18 17 21 21 C 1.39943 * 120.00009 * 151.80207 * 19 18 17 22 22 N 1.30824 * 120.00299 * 348.31504 * 21 19 18 23 23 Si 1.86799 * 119.99774 * 168.32042 * 21 19 18 24 24 H 1.48502 * 109.46995 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.46988 * 299.99776 * 23 21 19 26 26 H 1.48501 * 109.47512 * 59.99710 * 23 21 19 27 27 C 1.40719 * 119.50871 * 0.27227 * 18 17 16 28 28 C 1.37616 * 119.74525 * 359.44581 * 27 18 17 29 29 H 1.08995 * 109.47586 * 299.99871 * 1 2 3 30 30 H 1.09002 * 109.47536 * 60.00309 * 1 2 3 31 31 H 1.09006 * 109.47263 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47303 * 55.71181 * 4 2 1 33 33 H 1.09005 * 109.47036 * 175.70639 * 4 2 1 34 34 H 1.09004 * 109.05518 * 302.75485 * 7 5 4 35 35 H 1.08995 * 109.05568 * 61.66459 * 7 5 4 36 36 H 1.09000 * 109.57501 * 42.59790 * 8 7 5 37 37 H 1.08995 * 109.57717 * 162.98411 * 8 7 5 38 38 H 1.09006 * 108.77061 * 213.07398 * 9 8 7 39 39 H 1.08997 * 108.77473 * 331.24374 * 9 8 7 40 40 H 1.09000 * 108.92269 * 79.02000 * 10 9 8 41 41 H 1.09000 * 108.91751 * 197.67390 * 10 9 8 42 42 H 1.08997 * 108.97672 * 79.55927 * 11 10 9 43 43 H 1.09007 * 108.97799 * 198.26695 * 11 10 9 44 44 H 1.00903 * 111.00288 * 333.55729 * 12 11 10 45 45 H 1.00899 * 110.99689 * 210.18306 * 13 2 1 46 46 H 1.08992 * 109.47007 * 60.00005 * 14 13 2 47 47 H 1.09001 * 109.46901 * 300.00108 * 14 13 2 48 48 H 1.07999 * 119.87077 * 0.02562 * 16 15 14 49 49 H 1.07995 * 120.12767 * 179.97438 * 17 16 15 50 50 H 0.96995 * 119.99901 * 180.02562 * 22 21 19 51 51 H 1.07999 * 120.12728 * 179.72816 * 27 18 17 52 52 H 1.08007 * 119.87810 * 180.27245 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 1.6201 0.0597 2.4961 6 1 0.5369 0.1808 2.4857 7 6 1.9960 -0.7063 3.6791 8 6 1.5512 0.0002 4.9792 9 6 2.5018 1.1302 5.2679 10 6 2.0394 2.4755 4.6706 11 6 1.4700 2.3181 3.2476 12 7 2.2469 1.3976 2.4537 13 7 2.0197 -0.6924 -1.1995 14 6 2.1102 0.2295 -2.3396 15 6 2.6143 -0.5151 -3.5488 16 6 1.7119 -1.1234 -4.4078 17 6 2.1610 -1.8064 -5.5149 18 6 3.5419 -1.8856 -5.7737 19 6 4.0150 -2.5842 -6.9083 20 1 3.4434 -3.4062 -7.3133 21 6 5.2237 -2.2105 -7.5065 22 7 5.8007 -1.0861 -7.1685 23 14 6.0132 -3.3173 -8.7875 24 1 7.2769 -2.6996 -9.2640 25 1 6.3060 -4.6422 -8.1841 26 1 5.0842 -3.4896 -9.9332 27 6 4.4488 -1.2687 -4.8921 28 6 3.9768 -0.5861 -3.7944 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6152 -1.7242 1.2885 33 1 3.1273 -0.7883 1.2116 34 1 1.5276 -1.6893 3.6303 35 1 3.0788 -0.8298 3.6938 36 1 0.5427 0.3943 4.8540 37 1 1.5674 -0.7108 5.8052 38 1 2.5977 1.2406 6.3481 39 1 3.4791 0.8806 4.8550 40 1 1.2698 2.9020 5.3140 41 1 2.8889 3.1576 4.6363 42 1 0.4456 1.9515 3.3143 43 1 1.4652 3.2920 2.7580 44 1 3.2024 1.3595 2.7758 45 1 2.9079 -1.1373 -1.0228 46 1 2.7984 1.0394 -2.0981 47 1 1.1240 0.6421 -2.5523 48 1 0.6526 -1.0609 -4.2073 49 1 1.4563 -2.2799 -6.1824 50 1 6.6382 -0.8269 -7.5834 51 1 5.5110 -1.3270 -5.0788 52 1 4.6708 -0.1081 -3.1188 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563155002.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:12 Heat of formation + Delta-G solvation = -5.567476 kcal Electronic energy + Delta-G solvation = -26103.364637 eV Core-core repulsion = 22679.755250 eV Total energy + Delta-G solvation = -3423.609387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 316.221 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.95836 -37.81101 -36.56053 -34.13758 -33.26508 -33.13068 -31.12529 -29.26408 -28.96248 -27.45327 -26.17485 -25.76655 -23.99164 -22.77672 -21.27227 -20.90277 -20.17717 -19.85694 -19.64407 -17.20718 -16.12295 -15.96958 -15.72991 -15.30745 -15.15822 -14.73339 -14.50805 -14.16809 -13.94250 -13.63183 -13.39365 -13.15956 -13.08741 -12.71939 -12.59375 -12.36386 -12.14822 -11.90976 -11.89199 -11.80008 -11.43954 -11.36241 -11.12323 -11.10171 -11.03114 -10.95379 -10.87312 -10.70729 -10.56430 -10.40695 -10.33737 -10.17061 -9.47723 -9.28951 -9.11726 -8.59994 -7.86665 -7.36887 -7.16932 -6.64698 -4.29733 2.82049 3.10022 3.13394 3.15366 3.24156 3.99054 4.03993 4.21128 4.41753 4.51584 4.56963 4.74353 4.77972 4.91048 4.95845 5.13037 5.19902 5.27668 5.31760 5.40456 5.50397 5.61268 5.65768 5.69879 5.72493 5.79529 5.80618 5.83111 5.84578 5.93430 5.94734 6.01284 6.01870 6.11437 6.19955 6.32665 6.42446 6.48284 6.50591 6.60064 6.88974 7.01213 7.16014 7.22107 7.35246 7.45970 7.62214 7.70081 7.91325 7.98436 8.13211 8.22567 8.38655 8.71908 8.97547 9.05218 10.29710 Molecular weight = 316.22amu Principal moments of inertia in cm(-1) A = 0.028367 B = 0.002062 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.816458 B =13577.653272 C =13843.870977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.056 0.944 4 C -0.110 4.110 5 C 0.081 3.919 6 H 0.079 0.921 7 C -0.147 4.147 8 C -0.120 4.120 9 C -0.123 4.123 10 C -0.152 4.152 11 C 0.055 3.945 12 N -0.663 5.663 13 N -0.684 5.684 14 C 0.126 3.874 15 C -0.204 4.204 16 C -0.073 4.073 17 C -0.224 4.224 18 C 0.110 3.890 19 C -0.465 4.465 20 H 0.075 0.925 21 C 0.073 3.927 22 N -0.804 5.804 23 Si 0.910 3.090 24 H -0.279 1.279 25 H -0.265 1.265 26 H -0.266 1.266 27 C -0.159 4.159 28 C -0.099 4.099 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.339 0.661 45 H 0.337 0.663 46 H 0.018 0.982 47 H 0.059 0.941 48 H 0.087 0.913 49 H 0.090 0.910 50 H 0.279 0.721 51 H 0.117 0.883 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.654 4.659 22.239 23.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.074 0.926 4 C -0.148 4.148 5 C -0.029 4.029 6 H 0.097 0.903 7 C -0.186 4.186 8 C -0.158 4.158 9 C -0.161 4.161 10 C -0.191 4.191 11 C -0.075 4.075 12 N -0.292 5.292 13 N -0.316 5.316 14 C -0.002 4.002 15 C -0.206 4.206 16 C -0.092 4.092 17 C -0.244 4.244 18 C 0.108 3.892 19 C -0.495 4.495 20 H 0.093 0.907 21 C -0.143 4.143 22 N -0.430 5.430 23 Si 0.734 3.266 24 H -0.204 1.204 25 H -0.190 1.190 26 H -0.191 1.191 27 C -0.179 4.179 28 C -0.118 4.118 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.088 0.912 44 H 0.157 0.843 45 H 0.155 0.845 46 H 0.037 0.963 47 H 0.077 0.923 48 H 0.105 0.895 49 H 0.109 0.891 50 H 0.090 0.910 51 H 0.135 0.865 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.364 4.779 21.371 22.805 hybrid contribution 1.464 -0.158 0.578 1.582 sum -4.901 4.621 21.949 22.960 Atomic orbital electron populations 1.21786 0.95709 1.01437 1.00378 1.21397 0.95158 0.96949 0.88717 0.92603 1.21810 1.00668 0.98608 0.93745 1.20570 0.99562 0.88906 0.93826 0.90261 1.21315 1.01900 1.00283 0.95142 1.21390 0.99586 0.97258 0.97530 1.21376 0.99365 0.94672 1.00667 1.22653 1.01344 0.97218 0.97923 1.21846 0.97457 0.97675 0.90533 1.60998 1.05826 1.07129 1.55224 1.60690 1.34101 1.32581 1.04182 1.20562 0.98636 0.92051 0.88946 1.18975 0.93313 1.09488 0.98806 1.20343 0.96691 0.97494 0.94666 1.21027 0.95357 1.07795 1.00204 1.17629 0.90614 0.89641 0.91314 1.19536 1.04265 1.15071 1.10669 0.90692 1.25878 0.96452 0.94564 0.97391 1.69794 1.16282 1.18901 1.38013 0.86352 0.78599 0.80911 0.80691 1.20445 1.18956 1.19121 1.21314 0.99871 1.02507 0.94169 1.20548 0.93754 0.99881 0.97572 0.93380 0.93180 0.92728 0.91278 0.92266 0.91198 0.91830 0.91713 0.91820 0.92253 0.92247 0.91903 0.91932 0.91927 0.91189 0.84267 0.84477 0.96343 0.92276 0.89510 0.89146 0.91046 0.86472 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.17 37.16 0.34 -1.34 16 2 C 0.09 1.14 2.62 -67.72 -0.18 0.96 16 3 H 0.06 0.80 7.15 -51.93 -0.37 0.42 16 4 C -0.11 -1.17 4.30 -26.74 -0.12 -1.29 16 5 C 0.08 0.70 1.79 -70.59 -0.13 0.58 16 6 H 0.08 0.72 5.40 -51.93 -0.28 0.44 16 7 C -0.15 -1.10 4.53 -29.32 -0.13 -1.23 16 8 C -0.12 -0.79 5.60 -27.21 -0.15 -0.94 16 9 C -0.12 -0.78 5.28 -27.32 -0.14 -0.92 16 10 C -0.15 -0.97 5.92 -25.50 -0.15 -1.12 16 11 C 0.06 0.42 6.01 -4.67 -0.03 0.40 16 12 N -0.66 -5.80 5.70 -110.98 -0.63 -6.43 16 13 N -0.68 -11.04 6.30 -108.00 -0.68 -11.72 16 14 C 0.13 2.30 5.60 -4.98 -0.03 2.28 16 15 C -0.20 -4.52 5.41 -104.33 -0.56 -5.08 16 16 C -0.07 -1.69 9.67 -39.66 -0.38 -2.08 16 17 C -0.22 -5.67 9.80 -38.87 -0.38 -6.05 16 18 C 0.11 3.01 5.55 -106.82 -0.59 2.42 16 19 C -0.47 -12.64 9.06 -37.74 -0.34 -12.98 16 20 H 0.07 1.96 7.87 -52.49 -0.41 1.54 16 21 C 0.07 1.89 5.24 -17.34 -0.09 1.80 16 22 N -0.80 -21.27 10.87 55.55 0.60 -20.67 16 23 Si 0.91 19.13 29.58 -169.99 -5.03 14.11 16 24 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.26 -5.51 7.11 56.52 0.40 -5.11 16 26 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 27 C -0.16 -4.21 8.66 -38.87 -0.34 -4.54 16 28 C -0.10 -2.33 9.67 -39.66 -0.38 -2.71 16 29 H 0.05 0.51 6.45 -51.93 -0.33 0.18 16 30 H 0.05 0.67 7.54 -51.93 -0.39 0.28 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 33 H 0.06 0.65 8.04 -51.93 -0.42 0.23 16 34 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 35 H 0.06 0.49 7.59 -51.93 -0.39 0.09 16 36 H 0.06 0.44 7.15 -51.93 -0.37 0.07 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.39 6.79 -51.93 -0.35 0.04 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.48 6.51 -51.93 -0.34 0.15 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.34 2.85 7.36 -39.29 -0.29 2.56 16 45 H 0.34 5.50 8.26 -39.29 -0.32 5.18 16 46 H 0.02 0.33 7.99 -51.93 -0.42 -0.08 16 47 H 0.06 1.07 7.46 -51.93 -0.39 0.68 16 48 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 49 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 50 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 51 H 0.12 3.20 6.23 -52.49 -0.33 2.88 16 52 H 0.08 1.78 8.06 -52.48 -0.42 1.35 16 LS Contribution 392.89 15.07 5.92 5.92 Total: -1.00 -27.17 392.89 -12.79 -39.96 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -9.19 Total: 10.69 kcal Atomic # 6 Polarization: -28.08 SS G_CDS: -3.79 Total: -31.86 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: -0.71 Total: -38.81 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -27.17 -12.79 -39.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563155002.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.389 kcal (2) G-P(sol) polarization free energy of solvation -27.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds